Carubv10018629m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10018629m.g T286378_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.794 0.894
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.794 0.894
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.794 0.894
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.794 0.894
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.734 0.872
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10018629m Myb 268 318

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TGA10 Arabidopsis thaliana AT5G06839 D
Bostr.26959s0025 Boechera stricta Bostr.26959s0025 I
PGSC0003DMG400023678 Solanum tuberosum PGSC0003DMG400023678 I
Solyc10g078670.1 Solanum lycopersicum Solyc10g078670.1 I
Solyc10g080410.1 Solanum lycopersicum Solyc10g080410.1 I
Solyc11g068370.1 Solanum lycopersicum Solyc11g068370.1 I
Traes_1AL_3B659AABA Triticum aestivum Traes_1AL_3B659AABA I
Traes_1DS_0CFC1995D Triticum aestivum Traes_1DS_0CFC1995D I
Traes_6AS_9916DDE4D Triticum aestivum Traes_6AS_9916DDE4D I
Traes_6BS_65CDD608F Triticum aestivum Traes_6BS_65CDD608F I
Traes_6DS_FD90D1145 Triticum aestivum Traes_6DS_FD90D1145 I
Bostr.13129s0288 Boechera stricta Bostr.13129s0288 I
PGSC0003DMG400011430 Solanum tuberosum PGSC0003DMG400011430 I
Cagra.8005s0020 Capsella grandiflora Cagra.8005s0020 I
Carubv10003744m.g Capsella rubella Carubv10003744m.g I
Ciclev10031441m.g Citrus clementina Ciclev10031441m.g I
Eucgr.G02341 Eucalyptus grandis Eucgr.G02341 I
Eucgr.K01822 Eucalyptus grandis Eucgr.K01822 I
orange1.1g018357m.g Citrus sinensis orange1.1g018357m.g I
Pavir.Hb01807 Panicum virgatum Pavir.Hb01807 I
Thhalv10014032m.g Eutrema salsugineum Thhalv10014032m.g I
PDK_20s1405291g002 Phoenix dactylifera PDK_20s1405291g002 I
PDK_20s1736691g001 Phoenix dactylifera PDK_20s1736691g001 I
LPERR05G14450 Leersia perrieri LPERR05G14450 I
BGIOSGA019942 Oryza indica BGIOSGA019942 I
Bo3g004060 Brassica oleracea Bo3g004060 I
Bo9g175780 Brassica oleracea Bo9g175780 I
F775_16855 Aegilops tauschii F775_16855 I
F775_24386 Aegilops tauschii F775_24386 I
PAN Arabidopsis lyrata fgenesh2_kg.2__1120__AT1G68640.1 I
TGA10 Arabidopsis lyrata fgenesh2_kg.6__632__AT5G06839.2 I
GLYMA03G29825 Glycine max GLYMA03G29825 I
GRMZM2G029979 Zea mays GRMZM2G029979 I
GSMUA_Achr11G14570_001 Musa acuminata GSMUA_Achr11G14570_001 I
OS05G0443900 Oryza sativa OS05G0443900 I
MLOC_58614 Hordeum vulgare MLOC_58614 I
OB05G26080 Oryza brachyantha OB05G26080 I
OBART05G18270 Oryza barthii OBART05G18270 I
OGLUM05G19350 Oryza glumaepatula OGLUM05G19350 I
OLONG_005656 Oryza longistaminata OLONG_005656 I
OMERI05G15750 Oryza meridionalis OMERI05G15750 I
ONIVA05G19180 Oryza nivara ONIVA05G19180 I
ORGLA05G0158500 Oryza glaberrima ORGLA05G0158500 I
ORUFI05G19430 Oryza rufipogon ORUFI05G19430 I