MDP0000878701 (Malus domestica)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 MDP0000878701 T288734_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CDC5
M02698_2.00 		Arabidopsis thaliana
NVCGCTGAGBN
NVCTCAGCGBN		 SELEX
Mathelier et al.(2014)
MA0579.1 		0.909 0.989
CDC5
M11037_2.00 		Arabidopsis thaliana
NVCGCTGAGBN
NVCTCAGCGBN		 Transfac
Matys et al.(2006)
P$CDC5_01 		0.909 0.989
CDC5L
M11049_2.00 		Homo sapiens
GWKTTAAYRTAD
HTAYRTTAAMWC		 Transfac
Matys et al.(2006)
V$CDC5_01 		0.814 0.880
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000878701 Myb 7 53
MDP0000878701 Myb 59 103

Links

Other Myb/SANT family TFs
Other Malus domestica TFs

574 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G051256 Zea mays GRMZM2G051256 I
Sb03g012550 Sorghum bicolor Sb03g012550 I
Si002107m.g Setaria italica Si002107m.g I
29889.m003258 Ricinus communis 29889.m003258 I
cassava34998.m1 Manihot esculenta cassava34998.m1 I
evm.TU.supercontig_18.16 Carica papaya evm.TU.supercontig_18.16 I
Pavir.Ea01343 Panicum virgatum Pavir.Ea01343 I
Pavir.Eb01225 Panicum virgatum Pavir.Eb01225 N