Pavir.Ea01343 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ea01343 T289128_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYBP_MAIZE
M11057_2.00 		Zea mays
ACCWACCHN
NDGGTWGGT		 Transfac
Matys et al.(2006)
P$P_01 		0.699 0.759
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea01343.1.p Myb 14 61
Pavir.Ea01343.1.p Myb 67 111

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G051256 Zea mays GRMZM2G051256 I 0.770
Pavir.Eb01225 Panicum virgatum Pavir.Eb01225 N 0.769
Pavir.J12840 Panicum virgatum Pavir.J12840 N 0.769
cassava34998.m1 Manihot esculenta cassava34998.m1 I 0.709
Pavir.Ia03542 Panicum virgatum Pavir.Ia03542 I 0.703
GRMZM2G129872 Zea mays GRMZM2G129872 I 0.699
GRMZM2G016020 Zea mays GRMZM2G016020 I 0.699
MYBP_MAIZE Zea mays MYBP_MAIZE D 0.699
29889.m003258 Ricinus communis 29889.m003258 I 0.686
LjSGA_102038.1 Lotus japonicus LjSGA_102038.1 I 0.677
BGIOSGA003347 Oryza indica BGIOSGA003347 I 0.675
OLONG_002280 Oryza longistaminata OLONG_002280 I 0.671
evm.TU.supercontig_18.16 Carica papaya evm.TU.supercontig_18.16 I 0.662