cassava34998.m1 (Manihot esculenta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 cassava34998.m1 T284212_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYBP_MAIZE
M11057_2.00 		Zea mays
ACCWACCHN
NDGGTWGGT		 Transfac
Matys et al.(2006)
P$P_01 		0.732 0.809
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava34998.m1 Myb 14 61
cassava34998.m1 Myb 67 87

Links

Other Myb/SANT family TFs
Other Manihot esculenta TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ia03542 Panicum virgatum Pavir.Ia03542 I 0.821
GRMZM2G016020 Zea mays GRMZM2G016020 I 0.788
GRMZM2G129872 Zea mays GRMZM2G129872 I 0.788
29889.m003258 Ricinus communis 29889.m003258 I 0.786
OLONG_002280 Oryza longistaminata OLONG_002280 I 0.762
GRMZM2G051256 Zea mays GRMZM2G051256 I 0.757
Cagra.0551s0003 Capsella grandiflora Cagra.0551s0003 I 0.757
CM0385.290.nd Lotus japonicus CM0385.290.nd I 0.743
LjSGA_102038.1 Lotus japonicus LjSGA_102038.1 I 0.736
MYBP_MAIZE Zea mays MYBP_MAIZE D 0.732
evm.TU.supercontig_18.16 Carica papaya evm.TU.supercontig_18.16 I 0.727
mgf024704m Mimulus guttatus mgf024704m N 0.719
BGIOSGA003347 Oryza indica BGIOSGA003347 I 0.715
Pavir.Ea01343 Panicum virgatum Pavir.Ea01343 I 0.709
GLYMA19G24451 Glycine max GLYMA19G24451 N 0.702
30076.m004682 Ricinus communis 30076.m004682 I 0.701
SELMODRAFT_39454 Selaginella moellendorffii SELMODRAFT_39454 I 0.694
SELMODRAFT_39481 Selaginella moellendorffii SELMODRAFT_39481 I 0.694
SELMODRAFT_39507 Selaginella moellendorffii SELMODRAFT_39507 N 0.683
SELMODRAFT_39516 Selaginella moellendorffii SELMODRAFT_39516 N 0.683
F775_20860 Aegilops tauschii F775_20860 I 0.677
PGSC0003DMG400006176 Solanum tuberosum PGSC0003DMG400006176 I 0.673
F775_04823 Aegilops tauschii F775_04823 I 0.671
AMTR_s00048p00210040 Amborella trichopoda AMTR_s00048p00210040 N 0.668
Pavir.Eb01225 Panicum virgatum Pavir.Eb01225 N 0.666
Pavir.J12840 Panicum virgatum Pavir.J12840 N 0.666
GRMZM2G000818 Zea mays GRMZM2G000818 I 0.665
29933.m001452 Ricinus communis 29933.m001452 N 0.664
cassava3677.m1 Manihot esculenta cassava3677.m1 N 0.664
evm.TU.supercontig_1993.2 Carica papaya evm.TU.supercontig_1993.2 N 0.664
F775_25212 Aegilops tauschii F775_25212 N 0.663
chr1.CM0600.130.nd Lotus japonicus chr1.CM0600.130.nd N 0.663
Traes_4BL_F7B9CBA99 Triticum aestivum Traes_4BL_F7B9CBA99 N 0.661