Pavir.Ea00087 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ea00087 T289116_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.777 0.856
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.750 0.813
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.750 0.813
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.720 0.835
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.718 0.791
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.669 0.763
Q948S6_TOBAC
M11075_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA1_01 		0.661 0.755
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea00087.1.p Myb 50 96
Pavir.Ea00087.1.p Myb 102 148
Pavir.Ea00087.1.p Myb 154 198
Pavir.Ea00087.2.p Myb 50 96
Pavir.Ea00087.2.p Myb 102 148
Pavir.Ea00087.2.p Myb 154 198
Pavir.Ea00087.3.p Myb 50 96
Pavir.Ea00087.3.p Myb 102 148
Pavir.Ea00087.3.p Myb 154 198

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0014s05840 Populus trichocarpa POPTR_0014s05840 N 0.000
Solyc01g091000.2 Solanum lycopersicum Solyc01g091000.2 N 0.000
TCM_005554 Theobroma cacao TCM_005554 N 0.000
VIT_15s0048g00580 Vitis vinifera VIT_15s0048g00580 N 0.000
Cla006768 Citrullus lanatus Cla006768 N 0.000
30174.m008836 Ricinus communis 30174.m008836 N 0.000
cassava14439.m1 Manihot esculenta cassava14439.m1 N 0.000
cassava17724.valid.m1 Manihot esculenta cassava17724.valid.m1 N 0.000
Cucsa.120560 Cucumis sativus Cucsa.120560 N 0.000
evm.TU.supercontig_145.1 Carica papaya evm.TU.supercontig_145.1 N 0.000
SapurV1A.0033s0510 Salix purpurea SapurV1A.0033s0510 N 0.000
SapurV1A.0382s0270 Salix purpurea SapurV1A.0382s0270 N 0.000
PK01122.1 Cannabis sativa PK01122.1 N 0.000