Bra012342 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra012342 T292577_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC13
M07170_2.00 		Arabidopsis thaliana
TDNCTTGYYNNNCAAG
CTTGNNNRRCAAGNHA		 Dap-seq
OMalley et al.(2016)
ANAC013_col_a 		0.909 0.851
ANAC13
M07171_2.00 		Arabidopsis thaliana
CTTGYBHNNCAAGNHAH
DTDNCTTGNNDVRCAAG		 Dap-seq
OMalley et al.(2016)
ANAC013_colamp_a 		0.909 0.851
ANAC13
M11077_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANAC013_Q2 		0.909 0.851
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra012342.1-P NAC/NAM 17 142

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANAC13 Arabidopsis thaliana AT1G32870 D 0.909
Bo7g057730 Brassica oleracea Bo7g057730 I 0.960
ANAC13 Arabidopsis lyrata fgenesh2_kg.1__3425__AT1G32870.2 I 0.912
PGSC0003DMG400031149 Solanum tuberosum PGSC0003DMG400031149 I 0.878
POPTR_0002s06210 Populus trichocarpa POPTR_0002s06210 I 0.884
POPTR_0005s22180 Populus trichocarpa POPTR_0005s22180 I 0.879
Solyc04g072220.2 Solanum lycopersicum Solyc04g072220.2 I 0.886
Bostr.3359s0074 Boechera stricta Bostr.3359s0074 I 0.903
Cagra.1443s0015 Capsella grandiflora Cagra.1443s0015 I 0.910
Carubv10008817m.g Capsella rubella Carubv10008817m.g I 0.915
SapurV1A.0134s0420 Salix purpurea SapurV1A.0134s0420 I 0.882
Thhalv10007369m.g Eutrema salsugineum Thhalv10007369m.g I 0.930