Ciclev10032304m.g (Citrus clementina)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Ciclev10032304m.g T297643_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC029
M00973_2.00 		Arabidopsis thaliana
NBACGBMWNN
NNWKVCGTVN		 PBM
Lindemose et al.(2014)
NAP 		0.944 0.893
NAC029
M02369_2.00 		Arabidopsis thaliana
NRGTCAWNN
NNWTGACYN		 PBM
Weirauch et al.(2014)
pTH8397 		0.944 0.893
NAC029
M07180_2.00 		Arabidopsis thaliana
NCGTVHNNNWYACGBMA
TKVCGTRWNNNDBACGN		 Dap-seq
OMalley et al.(2016)
NAP_colamp_a 		0.944 0.893
NAC029
M07181_2.00 		Arabidopsis thaliana
WYACGBMAYYD
HRRTKVCGTRW		 Dap-seq
OMalley et al.(2016)
NAP_col_v3a 		0.944 0.893
Traes_5BL_CC18CAD72
M11085_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$NAC691_01 		0.880 0.768
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10032304m NAC/NAM 10 134
Ciclev10032627m NAC/NAM 2 84

Links

Other NAC/NAM family TFs
Other Citrus clementina TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NAC029 Arabidopsis thaliana AT1G69490 D 0.944
Traes_5BL_CC18CAD72 Triticum aestivum Traes_5BL_CC18CAD72 D 0.880
evm.TU.supercontig_1.48 Carica papaya evm.TU.supercontig_1.48 I 0.943
Ca_18090 Cicer arietinum Ca_18090 I 0.940
Eucgr.G02486 Eucalyptus grandis Eucgr.G02486 I 0.963
Eucgr.B03208 Eucalyptus grandis Eucgr.B03208 I 0.934
Carubv10020776m.g Capsella rubella Carubv10020776m.g I 0.944
Cagra.0887s0008 Capsella grandiflora Cagra.0887s0008 I 0.944
Bostr.10273s0418 Boechera stricta Bostr.10273s0418 I 0.944
Aquca_002_00663 Aquilegia coerulea Aquca_002_00663 I 0.940
mgf022118m Mimulus guttatus mgf022118m I 0.964
mgf016848m Mimulus guttatus mgf016848m I 0.946
Cucsa.284890 Cucumis sativus Cucsa.284890 I 0.957
cassava1317.valid.m1 Manihot esculenta cassava1317.valid.m1 I 0.964
29813.m001519 Ricinus communis 29813.m001519 I 0.966
Pm006470 Prunus mume Pm006470 I 0.967
Cla010367 Citrullus lanatus Cla010367 I 0.957
chr2.CM0641.320.nc Lotus japonicus chr2.CM0641.320.nc I 0.899
Gorai.005G142300 Gossypium raimondii Gorai.005G142300 I 0.964
Gorai.008G179900 Gossypium raimondii Gorai.008G179900 I 0.963
Lus10026617.g Linum usitatissimum Lus10026617.g I 0.935
Lus10030446.g Linum usitatissimum Lus10030446.g I 0.935
Lus10036773.g Linum usitatissimum Lus10036773.g I 0.965
Lus10037156.g Linum usitatissimum Lus10037156.g I 0.961
MDP0000262990 Malus domestica MDP0000262990 I 0.962
MDP0000481448 Malus domestica MDP0000481448 I 0.966
orange1.1g023197m.g Citrus sinensis orange1.1g023197m.g I 0.968
Pavir.J23516 Panicum virgatum Pavir.J23516 I 0.875
SapurV1A.0063s0610 Salix purpurea SapurV1A.0063s0610 I 0.945
SapurV1A.0063s0620 Salix purpurea SapurV1A.0063s0620 I 0.945
SapurV1A.0801s0090 Salix purpurea SapurV1A.0801s0090 I 0.964
Thhalv10018997m.g Eutrema salsugineum Thhalv10018997m.g I 0.944
PK25119.1 Cannabis sativa PK25119.1 I 0.965
AMTR_s00119p00040230 Amborella trichopoda AMTR_s00119p00040230 I 0.877
OB12G11500 Oryza brachyantha OB12G11500 I 0.889
Bo6g095510 Brassica oleracea Bo6g095510 I 0.934
Bo6g108930 Brassica oleracea Bo6g108930 I 0.947
Bra004385 Brassica rapa Bra004385 I 0.947
F775_26965 Aegilops tauschii F775_26965 I 0.880
NAP Arabidopsis lyrata fgenesh2_kg.2__1206__AT1G69490.1 I 0.944
GLYMA01G06150 Glycine max GLYMA01G06150 I 0.953
GLYMA02G12220 Glycine max GLYMA02G12220 I 0.955
GLYMA07G35630 Glycine max GLYMA07G35630 I 0.952
GLYMA20G04400 Glycine max GLYMA20G04400 I 0.954
GSMUA_Achr6G32320_001 Musa acuminata GSMUA_Achr6G32320_001 I 0.893
GSMUA_Achr7G21770_001 Musa acuminata GSMUA_Achr7G21770_001 I 0.877
MLOC_4747 Hordeum vulgare MLOC_4747 I 0.880
MTR_4g081870 Medicago truncatula MTR_4g081870 I 0.954
MTR_5g041940 Medicago truncatula MTR_5g041940 I 0.928
OB11G11210 Oryza brachyantha OB11G11210 I 0.887
Ca_16379 Cicer arietinum Ca_16379 I 0.941
OPUNC11G01330 Oryza punctata OPUNC11G01330 I 0.888
OPUNC12G01370 Oryza punctata OPUNC12G01370 I 0.888
PGSC0003DMG400002824 Solanum tuberosum PGSC0003DMG400002824 I 0.964
PGSC0003DMG400018435 Solanum tuberosum PGSC0003DMG400018435 I 0.962
POPTR_0008s08850 Populus trichocarpa POPTR_0008s08850 I 0.964
POPTR_0010s17350 Populus trichocarpa POPTR_0010s17350 I 0.936
PRUPE_ppa009530mg Prunus persica PRUPE_ppa009530mg I 0.967
Sb05g001580 Sorghum bicolor Sb05g001580 I 0.888
Sb08g001940 Sorghum bicolor Sb08g001940 I 0.883
Si010410m.g Setaria italica Si010410m.g I 0.883
Si026530m.g Setaria italica Si026530m.g I 0.880
Solyc04g005610.2 Solanum lycopersicum Solyc04g005610.2 I 0.950
Solyc05g007770.2 Solanum lycopersicum Solyc05g007770.2 I 0.958
TCM_011671 Theobroma cacao TCM_011671 I 0.951
NAP Vitis vinifera VIT_01s0026g02710 I 0.965