CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

RXRA *(Equus caballus)* Nuclear receptor
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00105 (zf-C4)	IPR001628	ENSECAG00000019365	T303033_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Rxra M00181_2.00	Mus musculus	NRRGGTCANN	NNTGACCYYN	PBM Badis et al.(2009) Rxra_1035	0.993	1.000
RXRA M03408_2.00	Homo sapiens	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) RXRA_1	0.993	1.000
RXRA M03409_2.00	Homo sapiens	RRGGTCATGACCYY	RRGGTCATGACCYY	SELEX Jolma et al.(2013) RXRA_2	0.993	1.000
RXRA M03410_2.00	Homo sapiens	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) RXRA_3	0.993	1.000
RXRA M03411_2.00	Homo sapiens	RRGGTCATGACCYY	RRGGTCATGACCYY	SELEX Jolma et al.(2013) RXRA_4	0.993	1.000
Rxra M03421_2.00	Mus musculus	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) Rxra_1	0.993	1.000
Rxra M03422_2.00	Mus musculus	RGGTCATGACCY	RGGTCATGACCY	SELEX Jolma et al.(2013) Rxra_2	0.993	1.000
RXRA M05671_2.00	Homo sapiens	RRGGTCAAAGGTCAN	NTGACCTTTGACCYY	SELEX Yin et al.(2017) RXRA_eDBD_HT-SELEX	0.993	1.000
RXRA M05882_2.00	Homo sapiens	VRGKTBAAAGGTYRH	DYRACCTTTVAMCYB	SMiLE-seq Isakova et al.(2017) RXRa	0.993	1.000
RXRA M07993_2.00	Homo sapiens	NRRGGTCA	TGACCYYN	ChIP-seq Gerstein et al.(2012) H1-hESC_RXRA_HudsonAlpha	0.993	1.000
RXRA M07994_2.00	Homo sapiens	DDNNMRRGGTCANDN	NHNTGACCYYKNNHH	ChIP-seq Gerstein et al.(2012) HepG2_RXRA_HudsonAlpha	0.993	1.000
RXRA M09294_2.00	Homo sapiens	VDDDNDNNVRRRGGKCAVDV	BHBTGMCCYYYBNNHNHHHB	Misc Kulakovskiy et al.(2013) RXRA_HUMAN.H11MO.0.A	0.993	1.000
Rxra M09306_2.00	Mus musculus	DDVNNNNNRAGKTCAAGGYCA	TGRCCTTGAMCTYNNNNNBHH	Misc Kulakovskiy et al.(2013) RXRA_MOUSE.H11MO.0.A	0.993	1.000
RXRA M11182_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RXRA_07	0.993	1.000
RXRA M05672_2.00	Homo sapiens	RRGGTCAAAGGTCAH	DTGACCTTTGACCYY	SELEX Yin et al.(2017) RXRA_eDBD_Methyl-HT-SELEX	0.993	1.000
Rxrb M02402_2.00	Mus musculus	VRGGTCAH	DTGACCYB	PBM Weirauch et al.(2014) pTH2861	0.992	0.900
RXRB M03415_2.00	Homo sapiens	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) RXRB_1	0.992	0.900
Rxrb M03435_2.00	Mus musculus	GRGGTCAAAGGTCA	TGACCTTTGACCYC	SELEX Jolma et al.(2013) Rxrb_1	0.992	0.900
RXRB M05681_2.00	Homo sapiens	RRGGTCAAAGGTCAN	NTGACCTTTGACCYY	SELEX Yin et al.(2017) RXRB_eDBD_HT-SELEX_1	0.992	0.900
RXRB M05682_2.00	Homo sapiens	RRGGTCAYGACCYY	RRGGTCRTGACCYY	SELEX Yin et al.(2017) RXRB_eDBD_HT-SELEX_2	0.992	0.900
RXRB M09297_2.00	Homo sapiens	DSAGGTCASD	HSTGACCTSH	Misc Kulakovskiy et al.(2013) RXRB_HUMAN.H11MO.0.C	0.992	0.900
Rxrb M09330_2.00	Mus musculus	DSAGGTCASD	HSTGACCTSH	Misc Kulakovskiy et al.(2013) RXRB_MOUSE.H11MO.0.C	0.992	0.900
RXRB M05683_2.00	Homo sapiens	RRGGTCAAAGGTCRN	NYGACCTTTGACCYY	SELEX Yin et al.(2017) RXRB_eDBD_Methyl-HT-SELEX_1	0.992	0.900
RXRB M05684_2.00	Homo sapiens	RRGGTCRYGACCYY	RRGGTCRYGACCYY	SELEX Yin et al.(2017) RXRB_eDBD_Methyl-HT-SELEX_2	0.992	0.900
Rxrg M02400_2.00	Mus musculus	VRGGTCAN	NTGACCYB	PBM Weirauch et al.(2014) pTH2880	0.992	0.957
RXRG M03375_2.00	Homo sapiens	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) RXRG_1	0.992	0.957
RXRG M03376_2.00	Homo sapiens	RRGGTCATGACCYY	RRGGTCATGACCYY	SELEX Jolma et al.(2013) RXRG_2	0.992	0.957
RXRG M03377_2.00	Homo sapiens	GRGGTCAAAGGTCA	TGACCTTTGACCYC	SELEX Jolma et al.(2013) RXRG_3	0.992	0.957
RXRG M03378_2.00	Homo sapiens	NRGGTCATGACCYC	GRGGTCATGACCYN	SELEX Jolma et al.(2013) RXRG_4	0.992	0.957
RXRG M02746_2.00	Homo sapiens	GGTCAAAGGTCA	TGACCTTTGACC	SELEX Jolma et al.(2010) RXRG_dimer	0.992	0.957
RXRG M05615_2.00	Homo sapiens	VRGGTCAAAGGTCAN	NTGACCTTTGACCYB	SELEX Yin et al.(2017) RXRG_FL_HT-SELEX_1	0.992	0.957
RXRG M05616_2.00	Homo sapiens	RRGGTCAYGACCYY	RRGGTCRTGACCYY	SELEX Yin et al.(2017) RXRG_FL_HT-SELEX_2	0.992	0.957
RXRG M05879_2.00	Homo sapiens	RGGTBAARGGTBRND	HNYVACCYTTVACCY	SMiLE-seq Isakova et al.(2017) RXRg	0.992	0.957
RXRG M09280_2.00	Homo sapiens	NGTCAAAGGTCAH	DTGACCTTTGACN	Misc Kulakovskiy et al.(2013) RXRG_HUMAN.H11MO.0.B	0.992	0.957
Rxrg M09305_2.00	Mus musculus	VDDVDNSVNRAGKTCAAGGYCA	TGRCCTTGAMCTYNBSNHBHHB	Misc Kulakovskiy et al.(2013) RXRG_MOUSE.H11MO.0.B	0.992	0.957
RXRG M05617_2.00	Homo sapiens	DRGGTBAARGGTBRN	NYVACCYTTVACCYH	SELEX Yin et al.(2017) RXRG_FL_Methyl-HT-SELEX_1	0.992	0.957
RXRG M05618_2.00	Homo sapiens	VRGGTCAYGACCYB	VRGGTCRTGACCYB	SELEX Yin et al.(2017) RXRG_FL_Methyl-HT-SELEX_2	0.992	0.957
usp M03934_2.00	Drosophila melanogaster	ARRGGTCAAAGGTCA	TGACCTTTGACCYYT	SELEX Nitta et al.(2015) usp_1	0.990	0.857
usp M06426_2.00	Drosophila melanogaster	HRRGGTCAH	DTGACCYYD	B1H Zhu et al.(2011) usp_SANGER_5_FBgn0003964	0.990	0.857
usp M02709_2.00	Drosophila melanogaster	GGGGTCACSN	NSGTGACCCC	SELEX Mathelier et al.(2014) MA0016.1	0.990	0.857
usp M09689_2.00	Drosophila melanogaster	KRGGTCACG	CGTGACCYM	Misc Kulakovskiy et al.(2009) usp	0.990	0.857
usp M11191_2.00	Drosophila melanogaster	GRGGTCAYS	SRTGACCYC	Transfac Matys et al.(2006) I$CF1_01	0.990	0.857
usp M11192_2.00	Drosophila melanogaster	GGGGTCAYS	SRTGACCCC	Transfac Matys et al.(2006) I$CF1_02	0.990	0.857
Nr2f6 M00811_2.00	Mus musculus	NRRGGTCANN	NNTGACCYYN	PBM Weirauch et al.(2013) pTH2193	0.960	0.629
Nr2f6 M03419_2.00	Mus musculus	RAGGTCAADAGGTCA	TGACCTHTTGACCTY	SELEX Jolma et al.(2013) Nr2f6_1	0.960	0.629
Nr2f6 M03420_2.00	Mus musculus	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) Nr2f6_2	0.960	0.629
Nr2c1 M00812_2.00	Mus musculus	NRRGGTCANN	NNTGACCYYN	PBM Weirauch et al.(2013) pTH1284	0.947	0.629
Nr2c1 M02399_2.00	Mus musculus	RRGGTCAH	DTGACCYY	PBM Weirauch et al.(2014) pTH3466	0.947	0.629
NR2C1 M05597_2.00	Homo sapiens	NRGKKCRYGAMMYN	NRKKTCRYGMMCYN	SELEX Yin et al.(2017) NR2C1_eDBD_HT-SELEX_1	0.947	0.629
NR2C1 M05598_2.00	Homo sapiens	NRRGGTCAN	NTGACCYYN	SELEX Yin et al.(2017) NR2C1_eDBD_HT-SELEX_2	0.947	0.629
NR2C1 M09273_2.00	Homo sapiens	RBYVRVAGGTCAB	VTGACCTBYBRVY	Misc Kulakovskiy et al.(2013) NR2C1_HUMAN.H11MO.0.C	0.947	0.629
Nr2c1 M09304_2.00	Mus musculus	RBYVRVAGGTCAB	VTGACCTBYBRVY	Misc Kulakovskiy et al.(2013) NR2C1_MOUSE.H11MO.0.C	0.947	0.629
NR2C1 M05599_2.00	Homo sapiens	NRRGGTCAN	NTGACCYYN	SELEX Yin et al.(2017) NR2C1_eDBD_Methyl-HT-SELEX_1	0.947	0.629
NR2C1 M05600_2.00	Homo sapiens	RRGGTCRYGACCYY	RRGGTCRYGACCYY	SELEX Yin et al.(2017) NR2C1_eDBD_Methyl-HT-SELEX_2	0.947	0.629
Hr78 M06430_2.00	Drosophila melanogaster	HVAGGTCA	TGACCTBD	B1H Zhu et al.(2011) Hr78_SANGER_5_FBgn0015239	0.942	0.614
Smp_105090 M02412_2.00	Schistosoma mansoni	RGGTCANN	NNTGACCY	PBM Weirauch et al.(2014) pTH6174	0.941	0.614
NR2C2 M03407_2.00	Homo sapiens	VRGGTCAAAGGTCA	TGACCTTTGACCYB	SELEX Jolma et al.(2013) NR2C2_1	0.939	0.671
NR2C2 M05669_2.00	Homo sapiens	NRGGTCRN	NYGACCYN	SELEX Yin et al.(2017) NR2C2_eDBD_HT-SELEX	0.939	0.671
NR2C2 M08156_2.00	Homo sapiens	NVRGGTCARAGGKCA	TGMCCTYTGACCYBN	ChIP-seq Mathelier et al.(2014) MA0504.1	0.939	0.671
NR2C2 M07990_2.00	Homo sapiens	WBYRCTTCCGGGKYV	BRMCCCGGAAGYRVW	ChIP-seq Gerstein et al.(2012) HeLa-S3_TR4_UCD	0.939	0.671
NR2C2 M07991_2.00	Homo sapiens	DWBYRCTTCCGGGKY	RMCCCGGAAGYRVWH	ChIP-seq Gerstein et al.(2012) HepG2b_TR4_UCD	0.939	0.671
NR2C2 M07992_2.00	Homo sapiens	WBYRCTTCCGGGKYR	YRMCCCGGAAGYRVW	ChIP-seq Gerstein et al.(2012) K562b_TR4_UCD	0.939	0.671
NR2C2 M08221_2.00	Homo sapiens	DWBYDCTTCCGGGKY	RMCCCGGAAGHRVWH	ChIP-seq Contrino et al.(2012) Mv97	0.939	0.671
NR2C2 M08222_2.00	Homo sapiens	TCARAGGTCA	TGACCTYTGA	ChIP-seq Contrino et al.(2012) Mv98	0.939	0.671
NR2C2 M09292_2.00	Homo sapiens	RBTYMVRGGTCR	YGACCYBKRAVY	Misc Kulakovskiy et al.(2013) NR2C2_HUMAN.H11MO.0.B	0.939	0.671
NR2C2 M09611_2.00	Homo sapiens	RRGGTCARAGGTCA	TGACCTYTGACCYY	Misc Heinz et al.(2010) Hela-TR4_GSE24685	0.939	0.671
NR2C2 M11173_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NR2C2_03	0.939	0.671
NR2C2 M11174_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NR2C2_04	0.939	0.671
NR2C2 M11175_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TR4_01	0.939	0.671
NR2C2 M11176_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TR4_03	0.939	0.671
NR2C2 M11177_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TR4_Q2_01	0.939	0.671
NR2C2 M11178_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TR4_Q2	0.939	0.671
NR2C2 M11179_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TR4_Q3	0.939	0.671
NR2C2 M05670_2.00	Homo sapiens	NRGGTCRN	NYGACCYN	SELEX Yin et al.(2017) NR2C2_eDBD_Methyl-HT-SELEX	0.939	0.671
Nr2c2 M09303_2.00	Mus musculus	RRGKSARAGGKCA	TGMCCTYTSMCYY	Misc Kulakovskiy et al.(2013) NR2C2_MOUSE.H11MO.0.A	0.939	0.657
PPARD M05581_2.00	Homo sapiens	NRRGGTCAAAGGTCAN	NTGACCTTTGACCYYN	SELEX Yin et al.(2017) PPARD_eDBD_HT-SELEX_1	0.937	0.571
PPARD M05582_2.00	Homo sapiens	HRRGGTCAYGACCYYD	HRRGGTCRTGACCYYD	SELEX Yin et al.(2017) PPARD_eDBD_HT-SELEX_2	0.937	0.571
PPARD M05583_2.00	Homo sapiens	NRRGGTCAAAGGTCRN	NYGACCTTTGACCYYN	SELEX Yin et al.(2017) PPARD_eDBD_Methyl-HT-SELEX_1	0.937	0.571
PPARD M05584_2.00	Homo sapiens	NRRGGTCRCGACCYYN	NRRGGTCGYGACCYYN	SELEX Yin et al.(2017) PPARD_eDBD_Methyl-HT-SELEX_2	0.937	0.571
svp M06423_2.00	Drosophila melanogaster	ARGGTCA	TGACCYK	B1H Zhu et al.(2011) svp_SANGER_5_FBgn0003651	0.936	0.629
NR2F6 M02396_2.00	Homo sapiens	NNRGGTCR	YGACCYNN	PBM Weirauch et al.(2014) pTH6747	0.934	0.614
NR2F6 M03386_2.00	Homo sapiens	RRGGTCAAAAGGTCA	TGACCTTTTGACCYY	SELEX Jolma et al.(2013) NR2F6_1	0.934	0.614
NR2F6 M03387_2.00	Homo sapiens	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) NR2F6_2	0.934	0.614
NR2F6 M03388_2.00	Homo sapiens	NRGGTCAAAGGTCA	TGACCTTTGACCYN	SELEX Jolma et al.(2013) NR2F6_3	0.934	0.614
NR2F6 M05641_2.00	Homo sapiens	RRGGTCAAAGGTCAN	NTGACCTTTGACCYY	SELEX Yin et al.(2017) NR2F6_eDBD_HT-SELEX_1	0.934	0.614
NR2F6 M05642_2.00	Homo sapiens	RAGGTCANTGACCTY	RAGGTCANTGACCTY	SELEX Yin et al.(2017) NR2F6_eDBD_HT-SELEX_2	0.934	0.614
NR2F6 M05645_2.00	Homo sapiens	NRGGTCARAGGTCRN	NYGACCTYTGACCYN	SELEX Yin et al.(2017) NR2F6_FL_HT-SELEX_1	0.934	0.614
NR2F6 M05646_2.00	Homo sapiens	NRGGTCANYGACCYY	RRGGTCRNTGACCYN	SELEX Yin et al.(2017) NR2F6_FL_HT-SELEX_2	0.934	0.614
NR2F6 M11153_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$EAR2_Q2	0.934	0.614
NR2F6 M11154_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$EAR2_Q4	0.934	0.614
NR2F6 M05643_2.00	Homo sapiens	RRGGTCAAAGGTCRN	NYGACCTTTGACCYY	SELEX Yin et al.(2017) NR2F6_eDBD_Methyl-HT-SELEX_1	0.934	0.614
NR2F6 M05644_2.00	Homo sapiens	RRGGTCRNYGACCYY	RRGGTCRNYGACCYY	SELEX Yin et al.(2017) NR2F6_eDBD_Methyl-HT-SELEX_2	0.934	0.614
NR2F6 M05647_2.00	Homo sapiens	NRGGTYADRGGKBRN	NYVMCCYHTRACCYN	SELEX Yin et al.(2017) NR2F6_FL_Methyl-HT-SELEX_1	0.934	0.614
NR2F6 M05648_2.00	Homo sapiens	NRGGTCANYGACCYN	NRGGTCRNTGACCYN	SELEX Yin et al.(2017) NR2F6_FL_Methyl-HT-SELEX_2	0.934	0.614
nr2f2 M02393_2.00	Danio rerio	NNRGGTCAN	NTGACCYNN	PBM Weirauch et al.(2014) pTH5882	0.933	0.643
Nr2f1 M00822_2.00	Mus musculus	DRGGTCRN	NYGACCYH	PBM Weirauch et al.(2013) pTH3811	0.933	0.643
NR2F1 M03403_2.00	Homo sapiens	RRGGTCAAAGGTCAN	NTGACCTTTGACCYY	SELEX Jolma et al.(2013) NR2F1_1	0.933	0.643
NR2F1 M03404_2.00	Homo sapiens	RRGGTCAARAGGTCAN	NTGACCTYTTGACCYY	SELEX Jolma et al.(2013) NR2F1_2	0.933	0.643
NR2F1 M03405_2.00	Homo sapiens	RRGGTCAN	NTGACCYY	SELEX Jolma et al.(2013) NR2F1_3	0.933	0.643
NR2F1 M03406_2.00	Homo sapiens	NHRRGGTCANVNG	CNBNTGACCYYDN	SELEX Jolma et al.(2013) NR2F1_4	0.933	0.643
NR2F1 M05661_2.00	Homo sapiens	NRGGTCAAAGGTCRN	NYGACCTTTGACCYN	SELEX Yin et al.(2017) NR2F1_eDBD_HT-SELEX_1	0.933	0.643
NR2F1 M05662_2.00	Homo sapiens	VRGGTCANYGACCYY	RRGGTCRNTGACCYB	SELEX Yin et al.(2017) NR2F1_eDBD_HT-SELEX_2	0.933	0.643
NR2F1 M05665_2.00	Homo sapiens	VRGGTCAAAGGTCAN	NTGACCTTTGACCYB	SELEX Yin et al.(2017) NR2F1_FL_HT-SELEX_1	0.933	0.643
NR2F1 M05666_2.00	Homo sapiens	RRGGTCANYGACCYY	RRGGTCRNTGACCYY	SELEX Yin et al.(2017) NR2F1_FL_HT-SELEX_2	0.933	0.643
NR2F1 M09291_2.00	Homo sapiens	NRRRBSRRRGGKCANVN	NBNTGMCCYYYSVYYYN	Misc Kulakovskiy et al.(2013) COT1_HUMAN.H11MO.0.C	0.933	0.643
Nr2f1 M09334_2.00	Mus musculus	YARAGGTCA	TGACCTYTR	Misc Kulakovskiy et al.(2013) COT1_MOUSE.H11MO.0.B	0.933	0.643
NR2F1 M11172_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$COUPTF1_Q6_01	0.933	0.643
NR2F1 M05663_2.00	Homo sapiens	NRGGTCAAAGGTCRN	NYGACCTTTGACCYN	SELEX Yin et al.(2017) NR2F1_eDBD_Methyl-HT-SELEX_1	0.933	0.643
NR2F1 M05664_2.00	Homo sapiens	NRGGTCANYGACCYH	DRGGTCRNTGACCYN	SELEX Yin et al.(2017) NR2F1_eDBD_Methyl-HT-SELEX_2	0.933	0.643
NR2F1 M05667_2.00	Homo sapiens	NRGGTCAAAGGTCRN	NYGACCTTTGACCYN	SELEX Yin et al.(2017) NR2F1_FL_Methyl-HT-SELEX_1	0.933	0.643
NR2F1 M05668_2.00	Homo sapiens	RRGGTCRNYGACCYY	RRGGTCRNYGACCYY	SELEX Yin et al.(2017) NR2F1_FL_Methyl-HT-SELEX_2	0.933	0.643
Nr2f2 M00184_2.00	Mus musculus	RRGGTCAN	NTGACCYY	PBM Badis et al.(2009) Nr2f2_2192	0.928	0.629
NR2F2 M08157_2.00	Homo sapiens	NNAAGGTCANN	NNTGACCTTNN	ChIP-seq Mathelier et al.(2014) MA1111.1	0.928	0.629
NR2F2 M08223_2.00	Homo sapiens	AAAGGTCA	TGACCTTT	ChIP-seq Contrino et al.(2012) Mv102	0.928	0.629
NR2F2 M08224_2.00	Homo sapiens	GGKCARAGGB	VCCTYTGMCC	ChIP-seq Contrino et al.(2012) Mv104	0.928	0.629
NR2F2 M09293_2.00	Homo sapiens	NARRGGTCADRDN	NHYHTGACCYYTN	Misc Kulakovskiy et al.(2013) COT2_HUMAN.H11MO.0.A	0.928	0.629
Nr2f2 M09325_2.00	Mus musculus	NNHRAGGTCANVD	HBNTGACCTYDNN	Misc Kulakovskiy et al.(2013) COT2_MOUSE.H11MO.0.A	0.928	0.629
NR2F2 M11180_2.00	Homo sapiens	WRRKKTCAARGGYTCA	TGARCCYTTGAMMYYW	Transfac Matys et al.(2006) V$ARP1_01	0.928	0.629
NR2F2 M11181_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$COUPTF2_Q6	0.928	0.629
O77476_BRUPA M02422_2.00	Brugia pahangi	NRGGTCAN	NTGACCYN	PBM Weirauch et al.(2014) pTH6019	0.928	0.614
RARG M02397_2.00	Homo sapiens	VGGTCANN	NNTGACCB	PBM Weirauch et al.(2014) pTH5430	0.926	0.586
Rarg M00810_2.00	Mus musculus	NNVGKTCANN	NNTGAMCBNN	PBM Weirauch et al.(2013) pTH4269	0.926	0.586
RARG M03391_2.00	Homo sapiens	SRGGTCAAAAGGTCAVD	HBTGACCTTTTGACCYS	SELEX Jolma et al.(2013) RARG_1	0.926	0.586
RARG M03392_2.00	Homo sapiens	RAGGTCAHVHWRAGGTCA	TGACCTYWDBDTGACCTY	SELEX Jolma et al.(2013) RARG_2	0.926	0.586
RARG M03393_2.00	Homo sapiens	RRGGTCAHNNRAGGTCA	TGACCTYNNDTGACCYY	SELEX Jolma et al.(2013) RARG_3	0.926	0.586
RARG M03394_2.00	Homo sapiens	GAGGTCAAAAGGTCAY	RTGACCTTTTGACCTC	SELEX Jolma et al.(2013) RARG_4	0.926	0.586
RARG M03395_2.00	Homo sapiens	RAGGTCAABYARRGKTCA	TGAMCYYTRVTTGACCTY	SELEX Jolma et al.(2013) RARG_5	0.926	0.586
RARG M03396_2.00	Homo sapiens	RAGGTCAHBNVRGGTCA	TGACCYBNVDTGACCTY	SELEX Jolma et al.(2013) RARG_6	0.926	0.586
Rarg M03416_2.00	Mus musculus	RRGGTCAAAAGGTCAH	DTGACCTTTTGACCYY	SELEX Jolma et al.(2013) Rarg_1	0.926	0.586
Rarg M03417_2.00	Mus musculus	RAGGTCAWVHAAAGGTCA	TGACCTTTDBWTGACCTY	SELEX Jolma et al.(2013) Rarg_2	0.926	0.586
Rarg M03418_2.00	Mus musculus	AAGGTCAHSARAGGTCA	TGACCTYTSDTGACCTT	SELEX Jolma et al.(2013) Rarg_3	0.926	0.586
RARG M05653_2.00	Homo sapiens	NRGGTCANV	BNTGACCYN	SELEX Yin et al.(2017) RARG_FL_HT-SELEX	0.926	0.586
RARG M05649_2.00	Homo sapiens	DRGGTCAAAAGKTCAN	NTGAMCTTTTGACCYH	SELEX Yin et al.(2017) RARG_eDBD_HT-SELEX_1	0.926	0.586
RARG M05650_2.00	Homo sapiens	RAGGTCATGACCTH	DAGGTCATGACCTY	SELEX Yin et al.(2017) RARG_eDBD_HT-SELEX_2	0.926	0.586
Rarg M05885_2.00	Mus musculus	NRGGTCANDRGKKYA	TRMMCYHNTGACCYN	SMiLE-seq Isakova et al.(2017) RARg	0.926	0.586
RARG M09289_2.00	Homo sapiens	RGGTCAVVVWGNMMNNDV	BHNNKKNCWBBBTGACCY	Misc Kulakovskiy et al.(2013) RARG_HUMAN.H11MO.0.B	0.926	0.586
Rarg M09300_2.00	Mus musculus	RGGTCAVVVWGNMMNNDV	BHNNKKNCWBBBTGACCY	Misc Kulakovskiy et al.(2013) RARG_MOUSE.H11MO.0.C	0.926	0.586
Rarg M09613_2.00	Mus musculus	RGKTCAAGGBCA	TGVCCTTGAMCY	Misc Heinz et al.(2010) ES-RARg_GSE30538	0.926	0.586
RARG M11167_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RARG_Q3	0.926	0.586
RARG M05654_2.00	Homo sapiens	NRGGTCRNV	BNYGACCYN	SELEX Yin et al.(2017) RARG_FL_Methyl-HT-SELEX	0.926	0.586
RARG M05651_2.00	Homo sapiens	DRGGTCAARRGGTCRN	NYGACCYYTTGACCYH	SELEX Yin et al.(2017) RARG_eDBD_Methyl-HT-SELEX_1	0.926	0.586
RARG M05652_2.00	Homo sapiens	DAGKTCRYGACCYY	RRGGTCRYGAMCTH	SELEX Yin et al.(2017) RARG_eDBD_Methyl-HT-SELEX_2	0.926	0.586
Pparg M05884_2.00	Mus musculus	HWNTRGGKYANB	VNTRMCCYANWD	SMiLE-seq Isakova et al.(2017) PPARg	0.925	0.586
PPARG M02707_2.00	Homo sapiens	STRGGTCANNDTGACCYANW	WNTRGGTCAHNNTGACCYAS	SELEX Mathelier et al.(2014) MA0066.1	0.925	0.586
PPARG M09278_2.00	Homo sapiens	VWSKRGGKSARAGGKSA	TSMCCTYTSMCCYMSWB	Misc Kulakovskiy et al.(2013) PPARG_HUMAN.H11MO.0.A	0.925	0.586
Pparg M09299_2.00	Mus musculus	HWBTRGGBSARAGGKNA	TNMCCTYTSVCCYAVWD	Misc Kulakovskiy et al.(2013) PPARG_MOUSE.H11MO.0.A	0.925	0.586
Pparg M09612_2.00	Mus musculus	TRGGNCARAGGKCA	TGMCCTYTGNCCYA	Misc Heinz et al.(2010) 3T3L1-Pparg_GSE13511	0.925	0.586
PPARG M11138_2.00	Homo sapiens	NNDRRGGTCAAAGGTCAHVND	HNBDTGACCTTTGACCYYHNN	Transfac Matys et al.(2006) V$PPARG_01	0.925	0.586
PPARG M11139_2.00	Homo sapiens	AWBTRGGTCACNDTGACCTASTT	AASTAGGTCAHNGTGACCYAVWT	Transfac Matys et al.(2006) V$PPARG_02	0.925	0.586
PPARG M11140_2.00	Homo sapiens	WWBHRGGNYAAAGKTCA	TGAMCTTTRNCCYDVWW	Transfac Matys et al.(2006) V$PPARG_03	0.925	0.586
PPARG M11141_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PPARG_Q6	0.925	0.586
sex-1 M02416_2.00	Caenorhabditis elegans	RAGGTCAH	DTGACCTY	PBM Weirauch et al.(2014) pTH5667	0.924	0.529
PPARA M09295_2.00	Homo sapiens	NWSTRGGBSARAGGKBA	TVMCCTYTSVCCYASWN	Misc Kulakovskiy et al.(2013) PPARA_HUMAN.H11MO.0.B	0.924	0.557
Ppara M09314_2.00	Mus musculus	HWSTRGGBSARAGGKBA	TVMCCTYTSVCCYASWD	Misc Kulakovskiy et al.(2013) PPARA_MOUSE.H11MO.0.A	0.924	0.557
PPARA M11183_2.00	Homo sapiens	CWRAWCYAGGNCAWAGKTCA	TGAMCTWTGNCCTRGWTYWG	Transfac Matys et al.(2006) V$PPARA_01	0.924	0.557
PPARA M11184_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PPARA_Q6	0.924	0.557
CBG17178 M02392_2.00	Caenorhabditis briggsae	RAGGTCAH	DTGACCTY	PBM Weirauch et al.(2014) pTH6634	0.919	0.543
Q969A9_BOMMO M02410_2.00	Bombyx mori	VRGGTCDN	NHGACCYB	PBM Weirauch et al.(2014) pTH5516	0.918	0.629
AAEL009588 M02388_2.00	Aedes aegypti	NRGGTCR	YGACCYN	PBM Weirauch et al.(2014) pTH5508	0.915	0.586
Hr46 M02406_2.00	Drosophila melanogaster	NRGGTCAN	NTGACCYN	PBM Weirauch et al.(2014) pTH6142	0.915	0.586
Hr46 M03926_2.00	Drosophila melanogaster	RGGTCAGTRGGTCA	TGACCYACTGACCY	SELEX Nitta et al.(2015) Hr46_1	0.915	0.586
Hr46 M06412_2.00	Drosophila melanogaster	AWKTGGGTYW	WRACCCAMWT	B1H Zhu et al.(2011) Hr46_FlyReg_FBgn0000448	0.915	0.586
Hr46 M06413_2.00	Drosophila melanogaster	HWNBAGGTCA	TGACCTVNWD	B1H Zhu et al.(2011) Hr46_SANGER_5_FBgn0000448	0.915	0.586
Eip78C M06427_2.00	Drosophila melanogaster	RGGTCA	TGACCY	B1H Zhu et al.(2011) Eip78C_SANGER_5_FBgn0004865	0.911	0.557
Rara M00185_2.00	Mus musculus	NRGGTCAN	NTGACCYN	PBM Badis et al.(2009) Rara_1051	0.911	0.571
RARA M03369_2.00	Homo sapiens	RRAGGTCAWBWRRGGTCA	TGACCYYWVWTGACCTYY	SELEX Jolma et al.(2013) RARA_1	0.911	0.571
RARA M03370_2.00	Homo sapiens	RAGGTCAAAAGGTCAWKB	VMWTGACCTTTTGACCTY	SELEX Jolma et al.(2013) RARA_2	0.911	0.571
RARA M03371_2.00	Homo sapiens	AGGTCAHNYWRAGGTCA	TGACCTYWRNDTGACCT	SELEX Jolma et al.(2013) RARA_3	0.911	0.571
RARA M03372_2.00	Homo sapiens	ARGGTCAAAAGGTCA	TGACCTTTTGACCYT	SELEX Jolma et al.(2013) RARA_4	0.911	0.571
RARA M03373_2.00	Homo sapiens	WRRGGTCAHSHRRGGTCA	TGACCYYDSDTGACCYYW	SELEX Jolma et al.(2013) RARA_5	0.911	0.571
RARA M03374_2.00	Homo sapiens	AGGTCAWNNARAGGTCA	TGACCTYTNNWTGACCT	SELEX Jolma et al.(2013) RARA_6	0.911	0.571
Rara M03432_2.00	Mus musculus	AAAGGTCAHBVRAGGTCA	TGACCTYBVDTGACCTTT	SELEX Jolma et al.(2013) Rara_1	0.911	0.571
Rara M03433_2.00	Mus musculus	AGGTCAHNHAAAGGTCA	TGACCTTTDNDTGACCT	SELEX Jolma et al.(2013) Rara_2	0.911	0.571
Rara M03434_2.00	Mus musculus	RAGGTCAAAAGGTCA	TGACCTTTTGACCTY	SELEX Jolma et al.(2013) Rara_3	0.911	0.571
RARA M05607_2.00	Homo sapiens	NVGGKCANNRGGKCAN	NTGMCCYNNTGMCCBN	SELEX Yin et al.(2017) RARA_eDBD_HT-SELEX_1	0.911	0.571
RARA M05608_2.00	Homo sapiens	NVGGKCAYGNCCBN	NVGGNCRTGMCCBN	SELEX Yin et al.(2017) RARA_eDBD_HT-SELEX_2	0.911	0.571
RARA M05609_2.00	Homo sapiens	NRRGGTCANV	BNTGACCYYN	SELEX Yin et al.(2017) RARA_eDBD_HT-SELEX_3	0.911	0.571
RARA M05878_2.00	Homo sapiens	RAGGTCA	TGACCTY	SMiLE-seq Isakova et al.(2017) RARa	0.911	0.571
RARA M09277_2.00	Homo sapiens	RRRDVDBSNDRAGKTCARGG	CCYTGAMCTYHNSVHBHYYY	Misc Kulakovskiy et al.(2013) RARA_HUMAN.H11MO.0.A	0.911	0.571
Rara M09329_2.00	Mus musculus	RGRTCRDRAGKTCAAGGTCA	TGACCTTGAMCTYHYGAYCY	Misc Kulakovskiy et al.(2013) RARA_MOUSE.H11MO.0.A	0.911	0.571
RARA M11137_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NR1B1_Q6	0.911	0.571
RARA M05610_2.00	Homo sapiens	DRGGKCRNDRGGTCRN	NYGACCYHNYGMCCYH	SELEX Yin et al.(2017) RARA_eDBD_Methyl-HT-SELEX_1	0.911	0.571
RARA M05611_2.00	Homo sapiens	NVGGTCAYGMCCYN	NRGGKCRTGACCBN	SELEX Yin et al.(2017) RARA_eDBD_Methyl-HT-SELEX_2	0.911	0.571
RARA M05612_2.00	Homo sapiens	NRAGGTCANN	NNTGACCTYN	SELEX Yin et al.(2017) RARA_eDBD_Methyl-HT-SELEX_3	0.911	0.571
Rarb M02401_2.00	Mus musculus	NRRGGTCAHN	NDTGACCYYN	PBM Weirauch et al.(2014) pTH2804	0.909	0.571
RARB M03355_2.00	Homo sapiens	AAAGGTCAARAGGTCA	TGACCTYTTGACCTTT	SELEX Jolma et al.(2013) RARB_1	0.909	0.571
Rarb M03423_2.00	Mus musculus	WAAGGTCAAAAGGTCA	TGACCTTTTGACCTTW	SELEX Jolma et al.(2013) Rarb_1	0.909	0.571
Rarb M03424_2.00	Mus musculus	RRAGGTCANBWRAGGTCA	TGACCTYWVNTGACCTYY	SELEX Jolma et al.(2013) Rarb_2	0.909	0.571
Rarb M03425_2.00	Mus musculus	AGGTCAHVBWRAGGTCA	TGACCTYWVBDTGACCT	SELEX Jolma et al.(2013) Rarb_3	0.909	0.571
RARB M05563_2.00	Homo sapiens	NHAAGGTCAN	NTGACCTTDN	SELEX Yin et al.(2017) RARB_FL_HT-SELEX_1	0.909	0.571
RARB M05564_2.00	Homo sapiens	RRGGTCAARRGGTCAN	NTGACCYYTTGACCYY	SELEX Yin et al.(2017) RARB_FL_HT-SELEX_2	0.909	0.571
RARB M05565_2.00	Homo sapiens	DAGGTCAYGACCYY	RRGGTCRTGACCTH	SELEX Yin et al.(2017) RARB_FL_HT-SELEX_3	0.909	0.571
RARB M11094_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NR1B2_Q6	0.909	0.571
RARB M05566_2.00	Homo sapiens	NHRAGGTCAH	DTGACCTYDN	SELEX Yin et al.(2017) RARB_FL_Methyl-HT-SELEX_1	0.909	0.571
RARB M05567_2.00	Homo sapiens	RRGGTCAHRRGGTCAN	NTGACCYYDTGACCYY	SELEX Yin et al.(2017) RARB_FL_Methyl-HT-SELEX_2	0.909	0.571
RARB M05568_2.00	Homo sapiens	RRGGTCAYGACCYY	RRGGTCRTGACCYY	SELEX Yin et al.(2017) RARB_FL_Methyl-HT-SELEX_3	0.909	0.571
Eip75B M03928_2.00	Drosophila melanogaster	MWVTAGGTCANN	NNTGACCTABWK	SELEX Nitta et al.(2015) Eip75B_1	0.909	0.557
Eip75B M03929_2.00	Drosophila melanogaster	AWNTRGGTCANTRGGTCA	TGACCYANTGACCYANWT	SELEX Nitta et al.(2015) Eip75B_2	0.909	0.557
Eip75B M06416_2.00	Drosophila melanogaster	KWWNTRGGTCA	TGACCYANWWM	B1H Zhu et al.(2011) Eip75B_SANGER_5_FBgn0000568	0.909	0.557
Q95WG3_ACRMI M02424_2.00	Acropora millepora	NRAGGTCAN	NTGACCTYN	PBM Weirauch et al.(2014) pTH6144	0.900	0.571
Rora M00819_2.00	Mus musculus	NNRGGTCA	TGACCYNN	PBM Weirauch et al.(2013) pTH3464	0.900	0.629
RORA M03353_2.00	Homo sapiens	NMRAGGTCAAVYYVAGGTCA	TGACCTBRRBTTGACCTYKN	SELEX Jolma et al.(2013) RORA_1	0.900	0.629
RORA M03354_2.00	Homo sapiens	WAWSTRGGTYASTAGGTCA	TGACCTASTRACCYASWTW	SELEX Jolma et al.(2013) RORA_2	0.900	0.629
RORA M02705_2.00	Homo sapiens	WWVDAGGTCA	TGACCTHBWW	SELEX Mathelier et al.(2014) MA0071.1	0.900	0.629
RORA M02706_2.00	Homo sapiens	NDWAWBTAGGTCAN	NTGACCTAVWTWHN	SELEX Mathelier et al.(2014) MA0072.1	0.900	0.629
RORA M09265_2.00	Homo sapiens	VWNDRGGBCARDR	YHYTGVCCYHNWB	Misc Kulakovskiy et al.(2013) RORA_HUMAN.H11MO.0.C	0.900	0.629
Rora M09327_2.00	Mus musculus	VWNDRGGBCARDR	YHYTGVCCYHNWB	Misc Kulakovskiy et al.(2013) RORA_MOUSE.H11MO.0.C	0.900	0.629
RORA M11090_2.00	Homo sapiens	DWWWVDAGGTCAH	DTGACCTHBWWWH	Transfac Matys et al.(2006) V$RORA1_01	0.900	0.629
RORA M11091_2.00	Homo sapiens	DWAWBTAGGTCAN	NTGACCTAVWTWH	Transfac Matys et al.(2006) V$RORA2_01	0.900	0.629
RORA M11092_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RORALPHA_Q4	0.900	0.629
RORA M11093_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RORA_Q4	0.900	0.629
RORC M05621_2.00	Homo sapiens	KRGGTCAYGMCCYM	KRGGKCRTGACCYM	SELEX Yin et al.(2017) RORC_eDBD_HT-SELEX_1	0.900	0.600
RORC M05622_2.00	Homo sapiens	NAWNKRGGTYANTRGGTCAN	NTGACCYANTRACCYMNWTN	SELEX Yin et al.(2017) RORC_eDBD_HT-SELEX_2	0.900	0.600
RORC M05880_2.00	Homo sapiens	NDAWNTRGGKCA	TGMCCYANWTHN	SMiLE-seq Isakova et al.(2017) RORc	0.900	0.600
RORC M09282_2.00	Homo sapiens	NDAWSTRRGTCA	TGACYYASWTHN	Misc Kulakovskiy et al.(2013) RORG_HUMAN.H11MO.0.C	0.900	0.600
RORC M05623_2.00	Homo sapiens	TRGGTCAYGACCYA	TRGGTCRTGACCYA	SELEX Yin et al.(2017) RORC_eDBD_Methyl-HT-SELEX_1	0.900	0.600
RORC M05624_2.00	Homo sapiens	NAWNTRGGTYASTAGGTCAN	NTGACCTASTRACCYANWTN	SELEX Yin et al.(2017) RORC_eDBD_Methyl-HT-SELEX_2	0.900	0.600
Rorc M09324_2.00	Mus musculus	NDAWSTRRGTCA	TGACYYASWTHN	Misc Kulakovskiy et al.(2013) RORG_MOUSE.H11MO.0.B	0.893	0.586
Rorc M09617_2.00	Mus musculus	AWBTRGGTCA	TGACCYAVWT	Misc Heinz et al.(2010) EL4-RORgt.Flag_GSE56019	0.893	0.586
Rorb M00820_2.00	Mus musculus	NRGGTCANN	NNTGACCYN	PBM Weirauch et al.(2013) pTH3469	0.889	0.600
rorb M02404_2.00	Tetraodon nigroviridis	NGAGGTCANN	NNTGACCTCN	PBM Weirauch et al.(2014) pTH6589	0.889	0.600
RORB M05677_2.00	Homo sapiens	DAWNTRGGTYAGTRGGTCAN	NTGACCYACTRACCYANWTH	SELEX Yin et al.(2017) RORB_eDBD_HT-SELEX_1	0.889	0.600
RORB M05678_2.00	Homo sapiens	NAWNKRGGTCAYGACCYMNWTN	NAWNKRGGTCRTGACCYMNWTN	SELEX Yin et al.(2017) RORB_eDBD_HT-SELEX_2	0.889	0.600
RORB M05883_2.00	Homo sapiens	AWNBRGGTCAN	NTGACCYVNWT	SMiLE-seq Isakova et al.(2017) RORb	0.889	0.600
RORB M11187_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RORBETA_Q2	0.889	0.600
RORB M05679_2.00	Homo sapiens	DAWBTRGGTYAGTRGGTCRN	NYGACCYACTRACCYAVWTH	SELEX Yin et al.(2017) RORB_eDBD_Methyl-HT-SELEX_1	0.889	0.600
RORB M05680_2.00	Homo sapiens	NAWNKRGGTCAYGACCYMNWTN	NAWNKRGGTCRTGACCYMNWTN	SELEX Yin et al.(2017) RORB_eDBD_Methyl-HT-SELEX_2	0.889	0.600
NR4A1 M05601_2.00	Homo sapiens	NAAAGGTCAN	NTGACCTTTN	SELEX Yin et al.(2017) NR4A1_eDBD_HT-SELEX_1	0.887	0.657
NR4A1 M05602_2.00	Homo sapiens	NAAAGGTCAN	NTGACCTTTN	SELEX Yin et al.(2017) NR4A1_eDBD_HT-SELEX_2	0.887	0.657
NR4A1 M08153_2.00	Homo sapiens	NAAAGGTCAN	NTGACCTTTN	ChIP-seq Mathelier et al.(2014) MA1112.1	0.887	0.657
NR4A1 M09274_2.00	Homo sapiens	AAAKGBCAN	NTGVCMTTT	Misc Kulakovskiy et al.(2013) NR4A1_HUMAN.H11MO.0.A	0.887	0.657
Nr4a1 M09317_2.00	Mus musculus	NRAADGKCA	TGMCHTTYN	Misc Kulakovskiy et al.(2013) NR4A1_MOUSE.H11MO.0.B	0.887	0.657
NR4A1 M09608_2.00	Homo sapiens	NNDNAAAGGTCA	TGACCTTTNHNN	Misc Heinz et al.(2010) K562-NR4A1_GSE31363	0.887	0.657
NR4A1 M11132_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NUR77_Q5_01	0.887	0.657
NR4A1 M11133_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NUR77_Q5_02	0.887	0.657
NR4A1 M11134_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NUR77_Q5	0.887	0.657
NR4A1 M05603_2.00	Homo sapiens	NAAAGGTCRN	NYGACCTTTN	SELEX Yin et al.(2017) NR4A1_eDBD_Methyl-HT-SELEX_1	0.887	0.657
NR4A1 M05604_2.00	Homo sapiens	NAAAGGTCRN	NYGACCTTTN	SELEX Yin et al.(2017) NR4A1_eDBD_Methyl-HT-SELEX_2	0.887	0.657
RORC M02405_2.00	Tetraodon nigroviridis	NGAGGTCANN	NNTGACCTCN	PBM Weirauch et al.(2014) pTH6612	0.883	0.586
Hr4 M06435_2.00	Drosophila melanogaster	AAGGTCA	TGACCTT	B1H Zhu et al.(2011) Hr4_SANGER_5_FBgn0023546	0.870	0.557
NR6A1 M05627_2.00	Homo sapiens	NNSAAGKTCAAGKKYRN	NYRMMCTTGAMCTTSNN	SELEX Yin et al.(2017) NR6A1_eDBD_HT-SELEX	0.863	0.586
NR6A1 M09284_2.00	Homo sapiens	AAGKTCAAGKTCA	TGAMCTTGAMCTT	Misc Kulakovskiy et al.(2013) NR6A1_HUMAN.H11MO.0.B	0.863	0.586
NR6A1 M11148_2.00	Homo sapiens	NKCAAGKTCAAGKTCANN	NNTGAMCTTGAMCTTGMN	Transfac Matys et al.(2006) V$GCNF_01	0.863	0.586
NR6A1 M11149_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GCNF_Q3	0.863	0.586
NR6A1 M05628_2.00	Homo sapiens	NYSAAGKTCAAGKKCRN	NYGMMCTTGAMCTTSRN	SELEX Yin et al.(2017) NR6A1_eDBD_Methyl-HT-SELEX	0.863	0.586
Nr4a2 M00818_2.00	Mus musculus	AAAGGTCA	TGACCTTT	PBM Weirauch et al.(2013) pTH3467	0.858	0.643
NR4A2 M03383_2.00	Homo sapiens	AGGTCAHNNNDTGACCT	AGGTCAHNNNDTGACCT	SELEX Jolma et al.(2013) NR4A2_1	0.858	0.643
NR4A2 M03384_2.00	Homo sapiens	TGACCTTTAAAGGTCA	TGACCTTTAAAGGTCA	SELEX Jolma et al.(2013) NR4A2_2	0.858	0.643
NR4A2 M03385_2.00	Homo sapiens	NBTAAAGGTCA	TGACCTTTAVN	SELEX Jolma et al.(2013) NR4A2_3	0.858	0.643
NR4A2 M05639_2.00	Homo sapiens	NWAAKGTCAN	NTGACMTTWN	SELEX Yin et al.(2017) NR4A2_eDBD_HT-SELEX	0.858	0.643
NR4A2 M05881_2.00	Homo sapiens	NAAAKGTYA	TRACMTTTN	SMiLE-seq Isakova et al.(2017) NR4A2	0.858	0.643
NR4A2 M09286_2.00	Homo sapiens	RAAGGTCAV	BTGACCTTY	Misc Kulakovskiy et al.(2013) NR4A2_HUMAN.H11MO.0.C	0.858	0.643
Nr4a2 M09323_2.00	Mus musculus	RAAGGTCAV	BTGACCTTY	Misc Kulakovskiy et al.(2013) NR4A2_MOUSE.H11MO.0.C	0.858	0.643
NR4A2 M11151_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NURR1_Q3_01	0.858	0.643
NR4A2 M11152_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NURR1_Q3	0.858	0.643
NR4A2 M08461_2.00	Homo sapiens	RAGGTCAM	KTGACCTY	COMPILED Mathelier et al.(2014) MA0160.1	0.858	0.643
NR4A2 M05640_2.00	Homo sapiens	NAAAGGTCRN	NYGACCTTTN	SELEX Yin et al.(2017) NR4A2_eDBD_Methyl-HT-SELEX	0.858	0.643
NR5A2 M05589_2.00	Homo sapiens	YCAAGGYCRYGRCCTTSR	YSAAGGYCRYGRCCTTGR	SELEX Yin et al.(2017) NR5A2_eDBD_HT-SELEX_1	0.858	0.600
NR5A2 M05590_2.00	Homo sapiens	NYCAAGGTCAH	DTGACCTTGRN	SELEX Yin et al.(2017) NR5A2_eDBD_HT-SELEX_2	0.858	0.600
NR5A2 M05591_2.00	Homo sapiens	YGRCCTTSVNYSAAGGYCR	YGRCCTTSRNBSAAGGYCR	SELEX Yin et al.(2017) NR5A2_eDBD_HT-SELEX_3	0.858	0.600
NR5A2 M09271_2.00	Homo sapiens	NBYCAAGGYCA	TGRCCTTGRVN	Misc Kulakovskiy et al.(2013) NR5A2_HUMAN.H11MO.0.B	0.858	0.600
NR5A2 M11126_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LRH1_Q5_01	0.858	0.600
NR5A2 M11127_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LRH1_Q5	0.858	0.600
NR5A2 M11128_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LRH1_Q6	0.858	0.600
NR5A2 M05592_2.00	Homo sapiens	YCAAGGYCRYGACCTTSR	YSAAGGTCRYGRCCTTGR	SELEX Yin et al.(2017) NR5A2_eDBD_Methyl-HT-SELEX_1	0.858	0.600
NR5A2 M05593_2.00	Homo sapiens	NYCAAGGTCRH	DYGACCTTGRN	SELEX Yin et al.(2017) NR5A2_eDBD_Methyl-HT-SELEX_2	0.858	0.600
NR5A2 M05594_2.00	Homo sapiens	YGRCCTTSVNBSAAGGYCR	YGRCCTTSVNBSAAGGYCR	SELEX Yin et al.(2017) NR5A2_eDBD_Methyl-HT-SELEX_3	0.858	0.600
nhr-6 M01298_2.00	Caenorhabditis elegans	AAAKGTCA	TGACMTTT	PBM Lambert et al.(2019) pTH9944	0.851	0.643
Nr5a2 M00816_2.00	Mus musculus	VAAGGTCR	YGACCTTB	PBM Weirauch et al.(2013) pTH3468	0.840	0.571
Nr5a2 M08158_2.00	Mus musculus	VRDBTCAAGGYCANN	NNTGRCCTTGAVHYB	ChIP-seq Mathelier et al.(2014) MA0505.1	0.840	0.571
Nr5a2 M09320_2.00	Mus musculus	NBYCAAGGYCA	TGRCCTTGRVN	Misc Kulakovskiy et al.(2013) NR5A2_MOUSE.H11MO.0.A	0.840	0.571
Nr5a2 M09616_2.00	Mus musculus	BYCAAGGYCA	TGRCCTTGRV	Misc Heinz et al.(2010) Pancreas-LRH1_GSE34295	0.840	0.571
Nr5a2 M09615_2.00	Mus musculus	BYCAAGGYCA	TGRCCTTGRV	Misc Heinz et al.(2010) mES-Nr5a2_GSE19019	0.840	0.571
ftz-f1 M02407_2.00	Drosophila melanogaster	RRGGTCAH	DTGACCYY	PBM Weirauch et al.(2014) pTH5709	0.833	0.586
ftz-f1 M06417_2.00	Drosophila melanogaster	MMRKYYSAAGGWCRCYGM	KCRGYGWCCTTSRRMYKK	B1H Zhu et al.(2011) ftz-f1_FlyReg_FBgn0001078	0.833	0.586
ftz-f1 M06418_2.00	Drosophila melanogaster	AAGGTCA	TGACCTT	B1H Zhu et al.(2011) ftz-f1_SANGER_5_FBgn0001078	0.833	0.586
NR5A1 M05613_2.00	Homo sapiens	NNCAAGGYCRN	NYGRCCTTGNN	SELEX Yin et al.(2017) NR5A1_FL_HT-SELEX	0.803	0.557
Nr5a1 M09322_2.00	Mus musculus	NBYCAAGGYCA	TGRCCTTGRVN	Misc Kulakovskiy et al.(2013) STF1_MOUSE.H11MO.0.B	0.803	0.557
NR5A1 M11142_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SF1_Q5_01	0.803	0.557
NR5A1 M11143_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SF1_Q5	0.803	0.557
NR5A1 M11144_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SF1_Q6_01	0.803	0.557
NR5A1 M11145_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SF1_Q6	0.803	0.557
NR5A1 M05614_2.00	Homo sapiens	NNSAAGGHCRN	NYGDCCTTSNN	SELEX Yin et al.(2017) NR5A1_FL_Methyl-HT-SELEX	0.803	0.557
Hr38 M03939_2.00	Drosophila melanogaster	NAAAGGTCA	TGACCTTTN	SELEX Nitta et al.(2015) Hr38_1	0.799	0.600
nhr-25 M08226_2.00	Caenorhabditis elegans	MAAGGTCA	TGACCTTK	ChIP-seq Contrino et al.(2012) Mw160	0.777	0.543
THRA M03368_2.00	Homo sapiens	DTGACCTYATVAGGTCAH	DTGACCTBATRAGGTCAH	SELEX Jolma et al.(2013) THRA_1	0.766	0.514
THRA M09275_2.00	Homo sapiens	RGKWSDNNYVAGGWSAN	NTSWCCTBRNNHSWMCY	Misc Kulakovskiy et al.(2013) THA_HUMAN.H11MO.0.C	0.766	0.514
Thra M09333_2.00	Mus musculus	VRGGKCANNYVRGGHCA	TGDCCYBRNNTGMCCYB	Misc Kulakovskiy et al.(2013) THA_MOUSE.H11MO.0.C	0.766	0.514
Thra M09619_2.00	Mus musculus	GGKCANNYVRGGHCA	TGDCCYBRNNTGMCC	Misc Heinz et al.(2010) C17.2-THRa_GSE38347	0.766	0.514
THRA M11135_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$T3RALPHA_Q6	0.766	0.514
GAG_AVIER M11193_2.00	Avian erythroblastosis virus	VHNTRAGGTCACSSNN	NNSSGTGACCTYANDB	Transfac Matys et al.(2006) V$T3R_01	0.761	0.486
Q6VU64_APLCA M02423_2.00	Aplysia californica	NRGGTCAN	NTGACCYN	PBM Weirauch et al.(2014) pTH6055	0.760	0.471
NR1H4 M00368_2.00	Homo sapiens	NVRGGTCANN	NNTGACCYBN	PBM Barrera et al.(2016) NR1H4_REF	0.753	0.471
NR1H4 M05876_2.00	Homo sapiens	DRGKTCAHHKD	HMDDTGAMCYH	SMiLE-seq Isakova et al.(2017) NR1H4	0.753	0.471
NR1H4 M08152_2.00	Homo sapiens	NNGGTCATTNN	NNAATGACCNN	ChIP-seq Mathelier et al.(2014) MA1110.1	0.753	0.471
NR1H4 M09263_2.00	Homo sapiens	CCBVNVGGYCRBTGMCCYB	VRGGKCAVYGRCCBNBVGG	Misc Kulakovskiy et al.(2013) NR1H4_HUMAN.H11MO.0.B	0.753	0.471
Nr1h4 M09332_2.00	Mus musculus	CCBVNVGGYCRBTGMCCYB	VRGGKCAVYGRCCBNBVGG	Misc Kulakovskiy et al.(2013) NR1H4_MOUSE.H11MO.0.A	0.753	0.471
Nr1h4 M09618_2.00	Mus musculus	NRGGBCANTGVCCY	RGGBCANTGVCCYN	Misc Heinz et al.(2010) Liver-FXR_Chong_et_al.	0.753	0.471
NR1H4 M11086_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FXR_Q2	0.753	0.471
NR1H4 M11087_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FXR_Q3	0.753	0.471
NR1H4 M11088_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FXR_Q5	0.753	0.471
NR1H4 M11089_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FXRRXR_Q5	0.753	0.471
NR1H4 M00367_2.00	Homo sapiens	NNNTWTTATDHNN	NNDHATAAWANNN	PBM Barrera et al.(2016) NR1H4_C144R	0.753	0.457
ERR M03941_2.00	Drosophila melanogaster	BSAAGGTCRH	DYGACCTTSV	SELEX Nitta et al.(2015) ERR_1	0.750	0.571
ERR M06433_2.00	Drosophila melanogaster	MAAGGTCA	TGACCTTK	B1H Zhu et al.(2011) ERR_SANGER_5_FBgn0035849	0.750	0.571
THRB M03379_2.00	Homo sapiens	DTGACCTBATVAGGTCAN	NTGACCTBATVAGGTCAH	SELEX Jolma et al.(2013) THRB_1	0.750	0.500
THRB M03380_2.00	Homo sapiens	DTGACCTBANTRAGGTCAH	DTGACCTYANTVAGGTCAH	SELEX Jolma et al.(2013) THRB_2	0.750	0.500
THRB M03381_2.00	Homo sapiens	NTGWCCTYADNTRAGGTCAH	DTGACCTYANHTRAGGWCAN	SELEX Jolma et al.(2013) THRB_3	0.750	0.500
THRB M05629_2.00	Homo sapiens	NRGGTCAAAGGTCRN	NYGACCTTTGACCYN	SELEX Yin et al.(2017) THRB_eDBD_HT-SELEX_1	0.750	0.500
THRB M05630_2.00	Homo sapiens	NRRGGTCAYGACCYYN	NRRGGTCRTGACCYYN	SELEX Yin et al.(2017) THRB_eDBD_HT-SELEX_2	0.750	0.500
THRB M05633_2.00	Homo sapiens	NTGWCCTBRNYVAGGWCAN	NTGWCCTBRNYVAGGWCAN	SELEX Yin et al.(2017) THRB_FL_HT-SELEX_1	0.750	0.500
THRB M05634_2.00	Homo sapiens	TRAGGTCABVYVAGGTCAH	DTGACCTBRBVTGACCTYA	SELEX Yin et al.(2017) THRB_FL_HT-SELEX_2	0.750	0.500
THRB M09285_2.00	Homo sapiens	VRVSYVABVKSAGGWCA	TGWCCTSMBVTBRSBYB	Misc Kulakovskiy et al.(2013) THB_HUMAN.H11MO.0.C	0.750	0.500
THRB M11150_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$T3RBETA_Q6_01	0.750	0.500
THRB M05631_2.00	Homo sapiens	NRGGTYRDRGGKYRN	NYRMCCYHYRACCYN	SELEX Yin et al.(2017) THRB_eDBD_Methyl-HT-SELEX_1	0.750	0.500
THRB M05632_2.00	Homo sapiens	NNRGGTCAYGACCYBN	NVRGGTCRTGACCYNN	SELEX Yin et al.(2017) THRB_eDBD_Methyl-HT-SELEX_2	0.750	0.500
THRB M05635_2.00	Homo sapiens	NTGWCCTBRNYVAGGWCAN	NTGWCCTBRNYVAGGWCAN	SELEX Yin et al.(2017) THRB_FL_Methyl-HT-SELEX_1	0.750	0.500
THRB M05636_2.00	Homo sapiens	YRAGGWCAYGYRAGGWCAH	DTGWCCTYRCRTGWCCTYR	SELEX Yin et al.(2017) THRB_FL_Methyl-HT-SELEX_2	0.750	0.500
HNF4G M08155_2.00	Homo sapiens	NVRGDNCAAAGKYCA	TGRMCTTTGNHCYBN	ChIP-seq Mathelier et al.(2014) MA0484.1	0.747	0.571
HNF4G M09287_2.00	Homo sapiens	VRGDNCAAAGKYCA	TGRMCTTTGNHCYB	Misc Kulakovskiy et al.(2013) HNF4G_HUMAN.H11MO.0.B	0.747	0.571
Hnf4g M09307_2.00	Mus musculus	VRGDNCAAAGKYCA	TGRMCTTTGNHCYB	Misc Kulakovskiy et al.(2013) HNF4G_MOUSE.H11MO.0.C	0.747	0.571
HNF4G M11155_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4G_01	0.747	0.571
HNF4G M11156_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4G_02	0.747	0.571
For this family, TFs with SR scores > 0.745* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSECAP00000017343	Nuclear receptor	110	179	HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKR

Links
Other Nuclear receptor family TFs
Other *Equus caballus* TFs

2964 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AGAP010438	Anopheles gambiae	AGAP010438	D
eg	Drosophila melanogaster	FBgn0000560	D
kni	Drosophila melanogaster	FBgn0001320	D
knrl	Drosophila melanogaster	FBgn0001323	D
SINV19531	Solenopsis invicta	SINV19531	I
LCUP004919	Lucilia cuprina	LCUP004919	I
HHAL001315-PA	Halyomorpha halys	HHAL001315-PA	I
CLEC025065	Cimex lectularius	CLEC025065	I
CLEC007515	Cimex lectularius	CLEC007515	I
Hsal_02936--XP_001120531.1_APIME	Harpegnathos saltator	Hsal_02936--XP_001120531.1_APIME	I
Hsal_02933--XP_001120662.1_APIME	Harpegnathos saltator	Hsal_02933--XP_001120662.1_APIME	I
Hsal_02927--XP_395932.2_APIME	Harpegnathos saltator	Hsal_02927--XP_395932.2_APIME	I
Cflo_03607--XP_395932.2_APIME	Camponotus floridanus	Cflo_03607--XP_395932.2_APIME	I
Cflo_03603--XP_001120531.1_APIME	Camponotus floridanus	Cflo_03603--XP_001120531.1_APIME	I
tetur34g00430	Tetranychus urticae	tetur34g00430	I
TC003413	Tribolium castaneum	TC003413	I
TC003409	Tribolium castaneum	TC003409	I
SMAR012614	Strigamia maritima	SMAR012614	I
LDEC003050	Leptinotarsa decemlineata	LDEC003050	I
SINV19432	Solenopsis invicta	SINV19432	I
RPRC003216	Rhodnius prolixus	RPRC003216	I
PHUM470190	Pediculus humanus	PHUM470190	I
PHUM468660	Pediculus humanus	PHUM468660	I
NV16468	Nasonia vitripennis	NV16468	I
L798_11128	Zootermopsis nevadensis	L798_11128	I
KGM_21348	Danaus plexippus	KGM_21348	I
KGM_10290	Danaus plexippus	KGM_10290	I
AMEM014965	Anopheles merus	AMEM014965	I
nRc.2.0.1.g43935	Romanomermis culicivorax	nRc.2.0.1.g43935	I
HNAJ_0001369901	Hymenolepis nana	HNAJ_0001369901	I
HDID_0000406601	Hymenolepis diminuta	HDID_0000406601	I
PPAI002202	Phlebotomus papatasi	PPAI002202	I
MDOA012160	Musca domestica	MDOA012160	I
MDOA008593	Musca domestica	MDOA008593	I
MDOA002495	Musca domestica	MDOA002495	I
ASIS019127	Anopheles sinensis	ASIS019127	I
AQUA005997	Anopheles quadriannulatus	AQUA005997	I
AMIN004996	Anopheles minimus	AMIN004996	I
LCUP004920	Lucilia cuprina	LCUP004920	I
AFUN003486	Anopheles funestus	AFUN003486	I
AFAF014433	Anopheles farauti	AFAF014433	I
AEPI004043	Anopheles epiroticus	AEPI004043	I
ADIR005732	Anopheles dirus	ADIR005732	I
ACUA011505	Anopheles culicifacies	ACUA011505	I
AATE013762	Anopheles atroparvus	AATE013762	I
AARA005929	Anopheles arabiensis	AARA005929	I
AALB007603	Anopheles albimanus	AALB007603	I
GB51231	Apis mellifera	GB51231	I
LCUP004922	Lucilia cuprina	LCUP004922	I
kni	Drosophila sechellia	FBgn0044208	I
GH16981	Drosophila grimshawi	FBgn0124452	I
GH16373	Drosophila grimshawi	FBgn0123844	I
GG16225	Drosophila erecta	FBgn0108460	I
GG13294	Drosophila erecta	FBgn0105566	I
GF25170	Drosophila ananassae	FBgn0102162	I
GF24122	Drosophila ananassae	FBgn0101116	I
GF24121	Drosophila ananassae	FBgn0101115	I
GA20312	Drosophila pseudoobscura	FBgn0080307	I
GA18413	Drosophila pseudoobscura	FBgn0078415	I
GA18381	Drosophila pseudoobscura	FBgn0078384	I
GH16982	Drosophila grimshawi	FBgn0124453	I
kni	Drosophila simulans	FBgn0044187	I
kni	Drosophila virilis	FBgn0013118	I
DAPPUDRAFT_290673	Daphnia pulex	DAPPUDRAFT_290673	I
DAPPUDRAFT_290668	Daphnia pulex	DAPPUDRAFT_290668	I
AGAP028221	Anopheles gambiae	AGAP028221	I
ACYPI56791	Acyrthosiphon pisum	ACYPI56791	I
ACYPI48166	Acyrthosiphon pisum	ACYPI48166	I
ACYPI066036	Acyrthosiphon pisum	ACYPI066036	I
ACEP13260	Atta cephalotes	ACEP13260	I
ACEP12797	Atta cephalotes	ACEP12797	I
GJ13774	Drosophila virilis	FBgn0200993	I
GB52331	Apis mellifera	GB52331	I
AAEL011231	Aedes aegypti	AAEL011231	I
GB48727	Apis mellifera	GB48727	I
GE23274	Drosophila yakuba	FBgn0240471	I
GE22392	Drosophila yakuba	FBgn0239615	I
GE22389	Drosophila yakuba	FBgn0239612	I
GE19793	Drosophila yakuba	FBgn0237126	I
GK17344	Drosophila willistoni	FBgn0219343	I
GK10566	Drosophila willistoni	FBgn0212581	I
GK10545	Drosophila willistoni	FBgn0212560	I
HMEL010451	Heliconius melpomene	HMEL010451	I
GJ11245	Drosophila virilis	FBgn0198506	I
GD15001	Drosophila simulans	FBgn0186673	I
GD12173	Drosophila simulans	FBgn0183909	I
GM22199	Drosophila sechellia	FBgn0177069	I
GL24862	Drosophila persimilis	FBgn0162450	I
GL12764	Drosophila persimilis	FBgn0150370	I
GL12762	Drosophila persimilis	FBgn0150368	I
GI11900	Drosophila mojavensis	FBgn0134658	I
GI11896	Drosophila mojavensis	FBgn0134654	I
GI11566	Drosophila mojavensis	FBgn0134326	I

RXRA (Equus caballus) Nuclear receptor

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

2964 Related TFs

RXRA **(Equus caballus)
Nuclear receptor**