ENSFALG00000008958 (Ficedula albicollis)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSFALG00000008958 T303142_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nr3c1
M05886_2.00 		Mus musculus
DGDACDBYNTGTNCY
RGNACANRVHGTHCH		 SMiLE-seq
Isakova et al.(2017)
GR 		0.994 1.000
Nr3c1
M09318_2.00 		Mus musculus
RGNACABYNTGTNCY
RGNACANRVTGTNCY		 Misc
Kulakovskiy et al.(2013)
GCR_MOUSE.H11MO.0.A 		0.994 1.000
Nr3c1
M09614_2.00 		Mus musculus
NRGDACABNNTGTNC
GNACANNVTGTHCYN		 Misc
Heinz et al.(2010)
RAW264.7-GRE_Unpublished 		0.994 1.000
NR3C2
M02395_2.00 		Homo sapiens
NNRGDACAN
NTGTHCYNN		 PBM
Weirauch et al.(2014)
pTH5924 		0.991 0.929
NR3C2
M03382_2.00 		Homo sapiens
NRGDACAHDRTGTHCYN
NRGDACAYHDTGTHCYN		 SELEX
Jolma et al.(2013)
NR3C2_1 		0.991 0.929
NR3C2
M05637_2.00 		Homo sapiens
NGNACRNNNYGTNCN
NGNACRNNNYGTNCN		 SELEX
Yin et al.(2017)
NR3C2_eDBD_HT-SELEX 		0.991 0.929
NR3C2
M05638_2.00 		Homo sapiens
NGNACRNNVYGTNCN
NGNACRBNNYGTNCN		 SELEX
Yin et al.(2017)
NR3C2_eDBD_Methyl-HT-SELEX 		0.991 0.929
NR3C1
M03366_2.00 		Homo sapiens
NRGWACAYNRTGTWCYH
DRGWACAYNRTGTWCYN		 SELEX
Jolma et al.(2013)
NR3C1_1 		0.991 0.957
NR3C1
M05587_2.00 		Homo sapiens
RGDACAYWDTGTHCY
RGDACAHWRTGTHCY		 SELEX
Yin et al.(2017)
NR3C1_eDBD_HT-SELEX 		0.991 0.957
NR3C1
M07986_2.00 		Homo sapiens
DGNACABYBTGTNC
GNACAVRVTGTNCH		 ChIP-seq
Gerstein et al.(2012)
A549_GR_HudsonAlpha 		0.991 0.957
NR3C1
M07987_2.00 		Homo sapiens
NNNNRGNACAYBBTGTHCYNN
NNRGDACAVVRTGTNCYNNNN		 ChIP-seq
Gerstein et al.(2012)
ECC-1_GR_HudsonAlpha 		0.991 0.957
NR3C1
M09270_2.00 		Homo sapiens
DGNACABKNTGTNCY
RGNACANMVTGTNCH		 Misc
Kulakovskiy et al.(2013)
GCR_HUMAN.H11MO.0.A 		0.991 0.957
NR3C1
M09607_2.00 		Homo sapiens
NRGNACABNVTGTNCY
RGNACABNVTGTNCYN		 Misc
Heinz et al.(2010)
A549-GR_GSE32465 		0.991 0.957
NR3C1
M11119_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GR_01 		0.991 0.957
NR3C1
M11120_2.00 		Homo sapiens
KKYACMRDVTGTYCTK
MAGRACABHYKGTRMM		 Transfac
Matys et al.(2006)
V$GRE_C 		0.991 0.957
NR3C1
M11121_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GR_Q4 		0.991 0.957
NR3C1
M11122_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GR_Q6_01 		0.991 0.957
NR3C1
M11123_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GR_Q6_02 		0.991 0.957
NR3C1
M11124_2.00 		Homo sapiens
NNWGVACANWDNNDNBHNN
NNDVNHNNHWNTGTBCWNN		 Transfac
Matys et al.(2006)
V$GR_Q6 		0.991 0.957
NR3C1
M11125_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NR3C1_04 		0.991 0.957
NR3C1
M05588_2.00 		Homo sapiens
RGDACANDRYGTHCY
RGDACRYHNTGTHCY		 SELEX
Yin et al.(2017)
NR3C1_eDBD_Methyl-HT-SELEX 		0.991 0.957
PGR
M03923_2.00 		Homo sapiens
DGNACANNNYGTNCY
RGNACRNNNTGTNCH		 SELEX
Nitta et al.(2015)
PGR_1 		0.989 0.886
PGR
M09266_2.00 		Homo sapiens
RGNACWBYBTGTNCYN
NRGNACAVRVWGTNCY		 Misc
Kulakovskiy et al.(2013)
PRGR_HUMAN.H11MO.0.A 		0.989 0.886
Pgr
M09326_2.00 		Mus musculus
RGNACWBYNTGTNCY
RGNACANRVWGTNCY		 Misc
Kulakovskiy et al.(2013)
PRGR_MOUSE.H11MO.0.A 		0.989 0.886
PGR
M09603_2.00 		Homo sapiens
RNACWNNNWGTNCHN
NDGNACWNNNWGTNY		 Misc
Heinz et al.(2010)
T47D-PR_GSE31130 		0.989 0.886
PGR
M11095_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PR_01 		0.989 0.886
PGR
M11096_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PR_02 		0.989 0.886
PGR
M11097_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PR_Q6 		0.989 0.886
Ar
M00821_2.00 		Mus musculus
NRRGAACAYN
NRTGTTCYYN		 PBM
Weirauch et al.(2013)
pTH1739 		0.974 0.771
AR
M03389_2.00 		Homo sapiens
DRGWACRHVDYGTWCCY
RGGWACRHBDYGTWCYH		 SELEX
Jolma et al.(2013)
AR_1 		0.974 0.771
AR
M03390_2.00 		Homo sapiens
DRGWACAYNRTGTWCYY
RRGWACAYNRTGTWCYH		 SELEX
Jolma et al.(2013)
AR_2 		0.974 0.771
Ar
M03436_2.00 		Mus musculus
NRGHACAYNVYGTWCYN
NRGWACRBNRTGTDCYN		 SELEX
Jolma et al.(2013)
Ar_1 		0.974 0.771
AR
M09288_2.00 		Homo sapiens
DRYAAAYADNNNRGNACA
TGTNCYNNNHTRTTTRYH		 Misc
Kulakovskiy et al.(2013)
ANDR_HUMAN.H11MO.0.A 		0.974 0.771
Ar
M09331_2.00 		Mus musculus
NRGNACABRVTGTNCY
RGNACABYVTGTNCYN		 Misc
Kulakovskiy et al.(2013)
ANDR_MOUSE.H11MO.0.A 		0.974 0.771
AR
M09610_2.00 		Homo sapiens
NRGNACABNVTGTNCY
RGNACABNVTGTNCYN		 Misc
Heinz et al.(2010)
LNCAP-AR_GSE27824 		0.974 0.771
AR
M09609_2.00 		Homo sapiens
SHDRGVACAS
STGTBCYHDS		 Misc
Heinz et al.(2010)
LNCaP-AR_GSE27824 		0.974 0.771
AR
M11157_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_01 		0.974 0.771
AR
M11158_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_02 		0.974 0.771
AR
M11159_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_03 		0.974 0.771
AR
M11160_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_04 		0.974 0.771
AR
M11161_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_11 		0.974 0.771
AR
M11162_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_13 		0.974 0.771
AR
M11163_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_14_H 		0.974 0.771
AR
M11164_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_Q2 		0.974 0.771
AR
M11165_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_Q6_01 		0.974 0.771
AR
M11166_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_Q6 		0.974 0.771
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSFALP00000009344 Nuclear receptor 323 392

Links

Other Nuclear receptor family TFs
Other Ficedula albicollis TFs

271 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000216918 Malus domestica MDP0000216918 N
mgf009009m Mimulus guttatus mgf009009m N
Aquca_012_00145 Aquilegia coerulea Aquca_012_00145 N
Ciclev10017220m.g Citrus clementina Ciclev10017220m.g N
Eucgr.A01720 Eucalyptus grandis Eucgr.A01720 N
Eucgr.D01323 Eucalyptus grandis Eucgr.D01323 N
Eucgr.K00803 Eucalyptus grandis Eucgr.K00803 N
evm.TU.contig_29502 Carica papaya evm.TU.contig_29502 N
gene23919-v1.0-hybrid Fragaria vesca gene23919-v1.0-hybrid N
Gorai.002G083400 Gossypium raimondii Gorai.002G083400 N
Gorai.008G172400 Gossypium raimondii Gorai.008G172400 N
Gorai.010G252300 Gossypium raimondii Gorai.010G252300 N
Gorai.010G253000 Gossypium raimondii Gorai.010G253000 N
Lus10007643.g Linum usitatissimum Lus10007643.g N
Lus10018366.g Linum usitatissimum Lus10018366.g N
Lus10018414.g Linum usitatissimum Lus10018414.g N
cassava4691.m1 Manihot esculenta cassava4691.m1 N
MDP0000270078 Malus domestica MDP0000270078 N
MDP0000387366 Malus domestica MDP0000387366 N
MDP0000499190 Malus domestica MDP0000499190 N
SapurV1A.0345s0340 Salix purpurea SapurV1A.0345s0340 N
SapurV1A.0346s0010 Salix purpurea SapurV1A.0346s0010 N
SapurV1A.0377s0050 Salix purpurea SapurV1A.0377s0050 N
SapurV1A.0722s0160 Salix purpurea SapurV1A.0722s0160 N
SapurV1A.0779s0100 Salix purpurea SapurV1A.0779s0100 N
SapurV1A.0928s0060 Salix purpurea SapurV1A.0928s0060 N
SapurV1A.1106s0040 Salix purpurea SapurV1A.1106s0040 N
SapurV1A.1227s0050 Salix purpurea SapurV1A.1227s0050 N
PK11198.1 Cannabis sativa PK11198.1 N
PDK_20s1307674g001 Phoenix dactylifera PDK_20s1307674g001 N
PDK_20s1335581g001 Phoenix dactylifera PDK_20s1335581g001 N
TCM_011327 Theobroma cacao TCM_011327 N
AMTR_s00147p00088570 Amborella trichopoda AMTR_s00147p00088570 N
GLYMA06G45941 Glycine max GLYMA06G45941 N
GLYMA12G10790 Glycine max GLYMA12G10790 N
GLYMA12G32130 Glycine max GLYMA12G32130 N
GSMUA_Achr10G09220_001 Musa acuminata GSMUA_Achr10G09220_001 N
MTR_4g046737 Medicago truncatula MTR_4g046737 N
POPTR_0004s02060 Populus trichocarpa POPTR_0004s02060 N
POPTR_0007s02510 Populus trichocarpa POPTR_0007s02510 N
POPTR_0011s00390 Populus trichocarpa POPTR_0011s00390 N
POPTR_0012s01420 Populus trichocarpa POPTR_0012s01420 N
POPTR_0015s02310 Populus trichocarpa POPTR_0015s02310 N
POPTR_0017s06470 Populus trichocarpa POPTR_0017s06470 N
PRUPE_ppa014728mg Prunus persica PRUPE_ppa014728mg N
PRUPE_ppa023926mg Prunus persica PRUPE_ppa023926mg N
Solyc07g052490.2 Solanum lycopersicum Solyc07g052490.2 N
AMTR_s00057p00119300 Amborella trichopoda AMTR_s00057p00119300 N
TCM_015351 Theobroma cacao TCM_015351 N
TCM_030163 Theobroma cacao TCM_030163 N
TCM_046858 Theobroma cacao TCM_046858 N
VIT_10s0116g00500 Vitis vinifera VIT_10s0116g00500 N
VIT_12s0059g02360 Vitis vinifera VIT_12s0059g02360 N
Pm009748 Prunus mume Pm009748 N
29842.m003592 Ricinus communis 29842.m003592 N
30086.m000210 Ricinus communis 30086.m000210 N
30169.m006531 Ricinus communis 30169.m006531 N
cassava11157.m1 Manihot esculenta cassava11157.m1 N
cassava23225.valid.m1 Manihot esculenta cassava23225.valid.m1 N
cassava23226.valid.m1 Manihot esculenta cassava23226.valid.m1 N
cassava24285.valid.m1 Manihot esculenta cassava24285.valid.m1 N
cassava24286.valid.m1 Manihot esculenta cassava24286.valid.m1 N