POPTR_0004s02060 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0004s02060 T278255_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s02060.1 Myb 25 69

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0011s00390 Populus trichocarpa POPTR_0011s00390 N 0.909
SapurV1A.0345s0340 Salix purpurea SapurV1A.0345s0340 N 0.909
SapurV1A.1106s0040 Salix purpurea SapurV1A.1106s0040 N 0.909
SapurV1A.0722s0160 Salix purpurea SapurV1A.0722s0160 N 0.879
TCM_011327 Theobroma cacao TCM_011327 N 0.854
VIT_12s0059g02360 Vitis vinifera VIT_12s0059g02360 N 0.854
MDP0000216918 Malus domestica MDP0000216918 N 0.852
Eucgr.A01720 Eucalyptus grandis Eucgr.A01720 N 0.851
TCM_046858 Theobroma cacao TCM_046858 N 0.843
Gorai.010G253000 Gossypium raimondii Gorai.010G253000 N 0.843
GLYMA12G32130 Glycine max GLYMA12G32130 N 0.839
Gorai.002G083400 Gossypium raimondii Gorai.002G083400 N 0.835
VIT_10s0116g00500 Vitis vinifera VIT_10s0116g00500 N 0.830
gene23919-v1.0-hybrid Fragaria vesca gene23919-v1.0-hybrid N 0.826
Eucgr.D01323 Eucalyptus grandis Eucgr.D01323 N 0.825
SapurV1A.0928s0060 Salix purpurea SapurV1A.0928s0060 N 0.825
30086.m000210 Ricinus communis 30086.m000210 N 0.823
cassava24285.valid.m1 Manihot esculenta cassava24285.valid.m1 N 0.822
cassava24286.valid.m1 Manihot esculenta cassava24286.valid.m1 N 0.822
PRUPE_ppa014728mg Prunus persica PRUPE_ppa014728mg N 0.821
MDP0000387366 Malus domestica MDP0000387366 N 0.821
POPTR_0007s02510 Populus trichocarpa POPTR_0007s02510 N 0.819
POPTR_0017s06470 Populus trichocarpa POPTR_0017s06470 N 0.819
PK11198.1 Cannabis sativa PK11198.1 N 0.814
cassava11157.m1 Manihot esculenta cassava11157.m1 N 0.808
29842.m003592 Ricinus communis 29842.m003592 N 0.803
29842.m003644 Ricinus communis 29842.m003644 N 0.796
MTR_4g046737 Medicago truncatula MTR_4g046737 N 0.795
SapurV1A.0779s0100 Salix purpurea SapurV1A.0779s0100 N 0.788
Gorai.008G172400 Gossypium raimondii Gorai.008G172400 N 0.787
Solyc07g052490.2 Solanum lycopersicum Solyc07g052490.2 N 0.786
mgf009009m Mimulus guttatus mgf009009m N 0.783
cassava4691.m1 Manihot esculenta cassava4691.m1 N 0.775
GSMUA_Achr10G09220_001 Musa acuminata GSMUA_Achr10G09220_001 N 0.762
GLYMA06G45941 Glycine max GLYMA06G45941 N 0.751
GLYMA12G10790 Glycine max GLYMA12G10790 N 0.751
AMTR_s00057p00119300 Amborella trichopoda AMTR_s00057p00119300 N 0.749
PRUPE_ppa023926mg Prunus persica PRUPE_ppa023926mg N 0.748
Pm009748 Prunus mume Pm009748 N 0.748
MDP0000270078 Malus domestica MDP0000270078 N 0.748
MDP0000499190 Malus domestica MDP0000499190 N 0.748
TCM_030163 Theobroma cacao TCM_030163 N 0.746
AMTR_s00147p00088570 Amborella trichopoda AMTR_s00147p00088570 N 0.745
Aquca_012_00145 Aquilegia coerulea Aquca_012_00145 N 0.741
PDK_20s1307674g001 Phoenix dactylifera PDK_20s1307674g001 N 0.736
cassava23225.valid.m1 Manihot esculenta cassava23225.valid.m1 N 0.725
cassava23226.valid.m1 Manihot esculenta cassava23226.valid.m1 N 0.725
evm.TU.contig_29502 Carica papaya evm.TU.contig_29502 N 0.721
POPTR_0012s01420 Populus trichocarpa POPTR_0012s01420 N 0.714
POPTR_0015s02310 Populus trichocarpa POPTR_0015s02310 N 0.714
TCM_015351 Theobroma cacao TCM_015351 N 0.714
SapurV1A.0346s0010 Salix purpurea SapurV1A.0346s0010 N 0.714
SapurV1A.0377s0050 Salix purpurea SapurV1A.0377s0050 N 0.714
SapurV1A.1227s0050 Salix purpurea SapurV1A.1227s0050 N 0.714
PDK_20s1335581g001 Phoenix dactylifera PDK_20s1335581g001 N 0.713
Gorai.010G252300 Gossypium raimondii Gorai.010G252300 N 0.709
Ciclev10017220m.g Citrus clementina Ciclev10017220m.g N 0.701
VIT_10s0116g01760 Vitis vinifera VIT_10s0116g01760 N 0.700
Eucgr.K00803 Eucalyptus grandis Eucgr.K00803 N 0.689
30169.m006531 Ricinus communis 30169.m006531 N 0.687
TCM_030224 Theobroma cacao TCM_030224 N 0.686
ETC1 Arabidopsis lyrata Al_scaffold_0001_92 N 0.682
ETC1 Arabidopsis thaliana AT1G01380 N 0.682
Bostr.5325s0057 Boechera stricta Bostr.5325s0057 N 0.682
Cagra.1968s0081 Capsella grandiflora Cagra.1968s0081 N 0.682
Carubv10011382m.g Capsella rubella Carubv10011382m.g N 0.682
PGSC0003DMG400024072 Solanum tuberosum PGSC0003DMG400024072 N 0.668
Aquca_005_00061 Aquilegia coerulea Aquca_005_00061 N 0.668
SapurV1A.0610s0050 Salix purpurea SapurV1A.0610s0050 N 0.666
cassava10382.m1 Manihot esculenta cassava10382.m1 N 0.665
MTR_5g009460 Medicago truncatula MTR_5g009460 N 0.663
Ca_15029 Cicer arietinum Ca_15029 N 0.663
Lus10005949.g Linum usitatissimum Lus10005949.g N 0.663
gene35171-v1.0-hybrid Fragaria vesca gene35171-v1.0-hybrid N 0.662