NR3C1 (Loxodonta africana)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSLAFG00000005015 T303525_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nr3c1
M05886_2.00 		Mus musculus
DGDACDBYNTGTNCY
RGNACANRVHGTHCH		 SMiLE-seq
Isakova et al.(2017)
GR 		0.994 1.000
Nr3c1
M09318_2.00 		Mus musculus
RGNACABYNTGTNCY
RGNACANRVTGTNCY		 Misc
Kulakovskiy et al.(2013)
GCR_MOUSE.H11MO.0.A 		0.994 1.000
Nr3c1
M09614_2.00 		Mus musculus
NRGDACABNNTGTNC
GNACANNVTGTHCYN		 Misc
Heinz et al.(2010)
RAW264.7-GRE_Unpublished 		0.994 1.000
NR3C2
M02395_2.00 		Homo sapiens
NNRGDACAN
NTGTHCYNN		 PBM
Weirauch et al.(2014)
pTH5924 		0.991 0.929
NR3C2
M03382_2.00 		Homo sapiens
NRGDACAHDRTGTHCYN
NRGDACAYHDTGTHCYN		 SELEX
Jolma et al.(2013)
NR3C2_1 		0.991 0.929
NR3C2
M05637_2.00 		Homo sapiens
NGNACRNNNYGTNCN
NGNACRNNNYGTNCN		 SELEX
Yin et al.(2017)
NR3C2_eDBD_HT-SELEX 		0.991 0.929
NR3C2
M05638_2.00 		Homo sapiens
NGNACRNNVYGTNCN
NGNACRBNNYGTNCN		 SELEX
Yin et al.(2017)
NR3C2_eDBD_Methyl-HT-SELEX 		0.991 0.929
NR3C1
M03366_2.00 		Homo sapiens
NRGWACAYNRTGTWCYH
DRGWACAYNRTGTWCYN		 SELEX
Jolma et al.(2013)
NR3C1_1 		0.991 0.957
NR3C1
M05587_2.00 		Homo sapiens
RGDACAYWDTGTHCY
RGDACAHWRTGTHCY		 SELEX
Yin et al.(2017)
NR3C1_eDBD_HT-SELEX 		0.991 0.957
NR3C1
M07986_2.00 		Homo sapiens
DGNACABYBTGTNC
GNACAVRVTGTNCH		 ChIP-seq
Gerstein et al.(2012)
A549_GR_HudsonAlpha 		0.991 0.957
NR3C1
M07987_2.00 		Homo sapiens
NNNNRGNACAYBBTGTHCYNN
NNRGDACAVVRTGTNCYNNNN		 ChIP-seq
Gerstein et al.(2012)
ECC-1_GR_HudsonAlpha 		0.991 0.957
NR3C1
M09270_2.00 		Homo sapiens
DGNACABKNTGTNCY
RGNACANMVTGTNCH		 Misc
Kulakovskiy et al.(2013)
GCR_HUMAN.H11MO.0.A 		0.991 0.957
NR3C1
M09607_2.00 		Homo sapiens
NRGNACABNVTGTNCY
RGNACABNVTGTNCYN		 Misc
Heinz et al.(2010)
A549-GR_GSE32465 		0.991 0.957
NR3C1
M11119_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GR_01 		0.991 0.957
NR3C1
M11120_2.00 		Homo sapiens
KKYACMRDVTGTYCTK
MAGRACABHYKGTRMM		 Transfac
Matys et al.(2006)
V$GRE_C 		0.991 0.957
NR3C1
M11121_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GR_Q4 		0.991 0.957
NR3C1
M11122_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GR_Q6_01 		0.991 0.957
NR3C1
M11123_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GR_Q6_02 		0.991 0.957
NR3C1
M11124_2.00 		Homo sapiens
NNWGVACANWDNNDNBHNN
NNDVNHNNHWNTGTBCWNN		 Transfac
Matys et al.(2006)
V$GR_Q6 		0.991 0.957
NR3C1
M11125_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NR3C1_04 		0.991 0.957
NR3C1
M05588_2.00 		Homo sapiens
RGDACANDRYGTHCY
RGDACRYHNTGTHCY		 SELEX
Yin et al.(2017)
NR3C1_eDBD_Methyl-HT-SELEX 		0.991 0.957
PGR
M03923_2.00 		Homo sapiens
DGNACANNNYGTNCY
RGNACRNNNTGTNCH		 SELEX
Nitta et al.(2015)
PGR_1 		0.989 0.886
PGR
M09266_2.00 		Homo sapiens
RGNACWBYBTGTNCYN
NRGNACAVRVWGTNCY		 Misc
Kulakovskiy et al.(2013)
PRGR_HUMAN.H11MO.0.A 		0.989 0.886
Pgr
M09326_2.00 		Mus musculus
RGNACWBYNTGTNCY
RGNACANRVWGTNCY		 Misc
Kulakovskiy et al.(2013)
PRGR_MOUSE.H11MO.0.A 		0.989 0.886
PGR
M09603_2.00 		Homo sapiens
RNACWNNNWGTNCHN
NDGNACWNNNWGTNY		 Misc
Heinz et al.(2010)
T47D-PR_GSE31130 		0.989 0.886
PGR
M11095_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PR_01 		0.989 0.886
PGR
M11096_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PR_02 		0.989 0.886
PGR
M11097_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PR_Q6 		0.989 0.886
Ar
M00821_2.00 		Mus musculus
NRRGAACAYN
NRTGTTCYYN		 PBM
Weirauch et al.(2013)
pTH1739 		0.974 0.771
AR
M03389_2.00 		Homo sapiens
DRGWACRHVDYGTWCCY
RGGWACRHBDYGTWCYH		 SELEX
Jolma et al.(2013)
AR_1 		0.974 0.771
AR
M03390_2.00 		Homo sapiens
DRGWACAYNRTGTWCYY
RRGWACAYNRTGTWCYH		 SELEX
Jolma et al.(2013)
AR_2 		0.974 0.771
Ar
M03436_2.00 		Mus musculus
NRGHACAYNVYGTWCYN
NRGWACRBNRTGTDCYN		 SELEX
Jolma et al.(2013)
Ar_1 		0.974 0.771
AR
M09288_2.00 		Homo sapiens
DRYAAAYADNNNRGNACA
TGTNCYNNNHTRTTTRYH		 Misc
Kulakovskiy et al.(2013)
ANDR_HUMAN.H11MO.0.A 		0.974 0.771
Ar
M09331_2.00 		Mus musculus
NRGNACABRVTGTNCY
RGNACABYVTGTNCYN		 Misc
Kulakovskiy et al.(2013)
ANDR_MOUSE.H11MO.0.A 		0.974 0.771
AR
M09610_2.00 		Homo sapiens
NRGNACABNVTGTNCY
RGNACABNVTGTNCYN		 Misc
Heinz et al.(2010)
LNCAP-AR_GSE27824 		0.974 0.771
AR
M09609_2.00 		Homo sapiens
SHDRGVACAS
STGTBCYHDS		 Misc
Heinz et al.(2010)
LNCaP-AR_GSE27824 		0.974 0.771
AR
M11157_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_01 		0.974 0.771
AR
M11158_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_02 		0.974 0.771
AR
M11159_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_03 		0.974 0.771
AR
M11160_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_04 		0.974 0.771
AR
M11161_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_11 		0.974 0.771
AR
M11162_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_13 		0.974 0.771
AR
M11163_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_14_H 		0.974 0.771
AR
M11164_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_Q2 		0.974 0.771
AR
M11165_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_Q6_01 		0.974 0.771
AR
M11166_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_Q6 		0.974 0.771
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000004197 Nuclear receptor 418 487

Links

Other Nuclear receptor family TFs
Other Loxodonta africana TFs

271 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NAC055 Arabidopsis thaliana AT3G15500 D 0.000
NAC019 Arabidopsis thaliana AT1G52890 D 0.000
Carubv10014211m.g Capsella rubella Carubv10014211m.g I 0.000
28219.m000090 Ricinus communis 28219.m000090 I 0.000
Carubv10009816m.g Capsella rubella Carubv10009816m.g I 0.000
Carubv10005353m.g Capsella rubella Carubv10005353m.g I 0.000
Cagra.0946s0025 Capsella grandiflora Cagra.0946s0025 I 0.000
Cagra.0570s0027 Capsella grandiflora Cagra.0570s0027 I 0.000
Cagra.0007s0097 Capsella grandiflora Cagra.0007s0097 I 0.000
Bostr.7867s0562 Boechera stricta Bostr.7867s0562 I 0.000
Bostr.28625s0149 Boechera stricta Bostr.28625s0149 I 0.000
Bostr.0124s0082 Boechera stricta Bostr.0124s0082 I 0.000
Aquca_024_00080 Aquilegia coerulea Aquca_024_00080 I 0.000
mgf013765m Mimulus guttatus mgf013765m I 0.000
mgf001766m Mimulus guttatus mgf001766m I 0.000
Cucsa.341800 Cucumis sativus Cucsa.341800 I 0.000
Cucsa.074610 Cucumis sativus Cucsa.074610 I 0.000
cassava42313.valid.m1 Manihot esculenta cassava42313.valid.m1 I 0.000
cassava2098.valid.m1 Manihot esculenta cassava2098.valid.m1 I 0.000
LjSGA_036303.1 Lotus japonicus LjSGA_036303.1 I 0.000
orange1.1g019011m.g Citrus sinensis orange1.1g019011m.g I 0.000
chr3.CM0590.390.nd Lotus japonicus chr3.CM0590.390.nd I 0.000
PK20135.1 Cannabis sativa PK20135.1 I 0.000
Thhalv10025818m.g Eutrema salsugineum Thhalv10025818m.g I 0.000
Thhalv10021174m.g Eutrema salsugineum Thhalv10021174m.g I 0.000
Thhalv10011676m.g Eutrema salsugineum Thhalv10011676m.g I 0.000
SapurV1A.1471s0010 Salix purpurea SapurV1A.1471s0010 I 0.000
SapurV1A.0864s0080 Salix purpurea SapurV1A.0864s0080 I 0.000
SapurV1A.0127s0020 Salix purpurea SapurV1A.0127s0020 I 0.000
Ciclev10008812m.g Citrus clementina Ciclev10008812m.g I 0.000
MDP0000262032 Malus domestica MDP0000262032 I 0.000
MDP0000132623 Malus domestica MDP0000132623 I 0.000
Gorai.009G433200 Gossypium raimondii Gorai.009G433200 I 0.000
Gorai.002G073700 Gossypium raimondii Gorai.002G073700 I 0.000
gene31149-v1.0-hybrid Fragaria vesca gene31149-v1.0-hybrid I 0.000
evm.TU.supercontig_80.93 Carica papaya evm.TU.supercontig_80.93 I 0.000
Eucgr.F01093 Eucalyptus grandis Eucgr.F01093 I 0.000
Bra018998 Brassica rapa Bra018998 I 0.000
GLYMA06G38410 Glycine max GLYMA06G38410 I 0.000
RD26 Arabidopsis lyrata fgenesh2_kg.7__1491__AT4G27410.3 I 0.000
ATNAC3 Arabidopsis lyrata fgenesh2_kg.3__1697__AT3G15500.1 I 0.000
ANAC019 Arabidopsis lyrata fgenesh2_kg.1__4367__AT1G52890.1 I 0.000
Bra027238 Brassica rapa Bra027238 I 0.000
Bra026353 Brassica rapa Bra026353 I 0.000
Bra021113 Brassica rapa Bra021113 I 0.000
Bra019052 Brassica rapa Bra019052 I 0.000
GLYMA12G22880 Glycine max GLYMA12G22880 I 0.000
Bra001596 Brassica rapa Bra001596 I 0.000
Bo7g111390 Brassica oleracea Bo7g111390 I 0.000
Bo6g030940 Brassica oleracea Bo6g030940 I 0.000
Bo5g127040 Brassica oleracea Bo5g127040 I 0.000
Bo3g066850 Brassica oleracea Bo3g066850 I 0.000
Bo1g128450 Brassica oleracea Bo1g128450 I 0.000
Bo1g048300 Brassica oleracea Bo1g048300 I 0.000
RD26 Arabidopsis thaliana AT4G27410 I 0.000
POPTR_1659s00200 Populus trichocarpa POPTR_1659s00200 I 0.000
Cla023770 Citrullus lanatus Cla023770 I 0.000
Cla011949 Citrullus lanatus Cla011949 I 0.000
Ca_21186 Cicer arietinum Ca_21186 I 0.000
VIT_19s0014g03290 Vitis vinifera VIT_19s0014g03290 I 0.000
TCM_031364 Theobroma cacao TCM_031364 I 0.000
Solyc12g013620.1 Solanum lycopersicum Solyc12g013620.1 I 0.000
Solyc07g063410.2 Solanum lycopersicum Solyc07g063410.2 I 0.000
PRUPE_ppa008301mg Prunus persica PRUPE_ppa008301mg I 0.000
Pm011603 Prunus mume Pm011603 I 0.000
POPTR_0011s12400 Populus trichocarpa POPTR_0011s12400 I 0.000
POPTR_0001s41460 Populus trichocarpa POPTR_0001s41460 I 0.000
PGSC0003DMG400019294 Solanum tuberosum PGSC0003DMG400019294 I 0.000
PGSC0003DMG400015342 Solanum tuberosum PGSC0003DMG400015342 I 0.000
MTR_8g059170 Medicago truncatula MTR_8g059170 I 0.000
MTR_2g079990 Medicago truncatula MTR_2g079990 I 0.000
GLYMA13G35550 Glycine max GLYMA13G35550 I 0.000
GLYMA12G35000 Glycine max GLYMA12G35000 I 0.000