NR1I2 (Procavia capensis)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSPCAG00000009674 T304394_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NR1I2
M03925_2.00 		Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY		 SELEX
Nitta et al.(2015)
NR1I2_1 		0.966 0.871
NR1I2
M05625_2.00 		Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX 		0.966 0.871
NR1I2
M09283_2.00 		Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C 		0.966 0.871
NR1I2
M05626_2.00 		Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX 		0.966 0.871
Nr1i2
M09316_2.00 		Mus musculus
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C 		0.921 0.857
ENSPMAG00000000180
M02403_2.00 		Petromyzon marinus
RGKWCRN
NYGWMCY		 PBM
Weirauch et al.(2014)
pTH5509 		0.909 0.657
VDR
M03363_2.00 		Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC		 SELEX
Jolma et al.(2013)
VDR_1 		0.877 0.614
Vdr
M03429_2.00 		Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY		 SELEX
Jolma et al.(2013)
Vdr_1 		0.877 0.614
VDR
M05877_2.00 		Homo sapiens
HRRGTTCA
TGAACYYD		 SMiLE-seq
Isakova et al.(2017)
VDR 		0.877 0.614
VDR
M09269_2.00 		Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A 		0.877 0.614
Vdr
M09315_2.00 		Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A 		0.877 0.614
VDR
M09606_2.00 		Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN		 Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484 		0.877 0.614
VDR
M11116_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q3 		0.877 0.614
VDR
M11117_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6_01 		0.877 0.614
VDR
M11118_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6 		0.877 0.614
ENSGALG00000028624
M02398_2.00 		Gallus gallus
GRGKTCAH
DTGAMCYC		 PBM
Weirauch et al.(2014)
pTH6492 		0.791 0.614
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000009009 Nuclear receptor 71 141

Links

Other Nuclear receptor family TFs
Other Procavia capensis TFs

138 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ONIVA01G50120 Oryza nivara ONIVA01G50120 N
Pavir.J04771 Panicum virgatum Pavir.J04771 N
Pavir.Ea04053 Panicum virgatum Pavir.Ea04053 N
TRIUR3_22165 Triticum urartu TRIUR3_22165 N
TRIUR3_18175 Triticum urartu TRIUR3_18175 N
Traes_3B_089C0C2EB Triticum aestivum Traes_3B_089C0C2EB N
Traes_2DL_865346DA2 Triticum aestivum Traes_2DL_865346DA2 N
Traes_2BL_00608F8D6 Triticum aestivum Traes_2BL_00608F8D6 N
Traes_2AL_ACBAA6A31 Triticum aestivum Traes_2AL_ACBAA6A31 N
Si002720m.g Setaria italica Si002720m.g N
Sb03g046090 Sorghum bicolor Sb03g046090 N
OS01G0952800 Oryza sativa OS01G0952800 N
ORUFI01G47560 Oryza rufipogon ORUFI01G47560 N
ORGLA01G0380200 Oryza glaberrima ORGLA01G0380200 N
OPUNC01G43070 Oryza punctata OPUNC01G43070 N
BGIOSGA000097 Oryza indica BGIOSGA000097 N
OMERI01G40940 Oryza meridionalis OMERI01G40940 N
OLONG_006457 Oryza longistaminata OLONG_006457 N
OGLUM01G48440 Oryza glumaepatula OGLUM01G48440 N
OBART01G44150 Oryza barthii OBART01G44150 N
OB01G53300 Oryza brachyantha OB01G53300 N
MLOC_72280 Hordeum vulgare MLOC_72280 N
MLOC_36351 Hordeum vulgare MLOC_36351 N
LPERR01G38470 Leersia perrieri LPERR01G38470 N
GRMZM2G057413 Zea mays GRMZM2G057413 N
F775_19529 Aegilops tauschii F775_19529 N
BRADI3G43250 Brachypodium distachyon BRADI3G43250 N
BRADI2G60970 Brachypodium distachyon BRADI2G60970 N
BGIOSGA005178 Oryza indica BGIOSGA005178 N