Ppa-nhr-3 (Pristionchus pacificus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 PPA28597 T305939_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-34
M00690_2.00 		Caenorhabditis elegans
NNNNDHYRNN
NNYRDHNNNN		 PBM
Narasimhan et al.(2015)
pTH9907 		0.817 0.514
GA30480
M02409_2.00 		Drosophila pseudoobscura
RAGATCAM
KTGATCTY		 PBM
Weirauch et al.(2014)
pTH5877 		0.802 0.571
Hr51
M06432_2.00 		Drosophila melanogaster
AMRDATCARARGW
WCYTYTGATHYKT		 B1H
Zhu et al.(2011)
Hr51_SANGER_5_FBgn0034012 		0.802 0.571
NR2E3
M00373_2.00 		Homo sapiens
NRAGATCAMN
NKTGATCTYN		 PBM
Barrera et al.(2016)
NR2E3_REF 		0.782 0.543
Nr2e3
M02708_2.00 		Mus musculus
AAGCTTD
HAAGCTT		 SELEX
Mathelier et al.(2014)
MA0164.1 		0.782 0.543
Nr2e3
M09328_2.00 		Mus musculus
NAAGTCAAAARKCA
TGMYTTTTGACTTN		 Misc
Kulakovskiy et al.(2013)
NR2E3_MOUSE.H11MO.0.C 		0.782 0.543
NR2E3
M00372_2.00 		Homo sapiens
AAAGATCA
TGATCTTT		 PBM
Barrera et al.(2016)
NR2E3_R77Q 		0.782 0.543
NR2E3
M00370_2.00 		Homo sapiens
NNNWRABATCANN
NNTGATVTYWNNN		 PBM
Barrera et al.(2016)
NR2E3_R76Q 		0.755 0.529
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PPA28597 Nuclear receptor 46 115

Links

Other Nuclear receptor family TFs
Other Pristionchus pacificus TFs

229 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DME_0000608401 Dracunculus medinensis DME_0000608401 I
TTRE_0000156401 Trichuris trichiura TTRE_0000156401 I
TMUE_s0064002300 Trichuris muris TMUE_s0064002300 I
TCNE_0001220201 Toxocara canis TCNE_0001220201 I
TCLT_0000472801 Thelazia callipaeda TCLT_0000472801 I
SMUV_0001104401 Syphacia muris SMUV_0001104401 I
nOo.2.0.1.g07043 Onchocerca ochengi nOo.2.0.1.g07043 I
nLs.2.1.2.g09168 Litomosoides sigmodontis nLs.2.1.2.g09168 I
nDi.2.2.2.g10740 Dirofilaria immitis nDi.2.2.2.g10740 I
EVEC_0000549701 Enterobius vermicularis EVEC_0000549701 I
WUBG_04696 Wuchereria bancrofti WUBG_04696 I
D918_01175 Trichuris suis D918_01175 I
D917_07972 Trichinella nativa D917_07972 I
BXY_0993100 Bursaphelenchus xylophilus BXY_0993100 I
BTMF_0000836601 Brugia timori BTMF_0000836601 I
ASU_05469 Ascaris suum ASU_05469 I
WBGene00238199 Onchocerca volvulus WBGene00238199 I
LOAG_11444 Loa loa LOAG_11444 I
EFV52614 Trichinella spiralis EFV52614 I
DAPPUDRAFT_319330 Daphnia pulex DAPPUDRAFT_319330 I
Bm3574 Brugia malayi Bm3574 I
MhA1_Contig1748.frz3.gene3 Meloidogyne hapla MhA1_Contig1748.frz3.gene3 N
Minc14190 Meloidogyne incognita Minc14190 N
scaffold607-EXSNAP2012.2 Pristionchus exspectatus scaffold607-EXSNAP2012.2 N
snap_masked-nMf.1.1.scaf01565-processed-gene-0.4 Meloidogyne floridensis snap_masked-nMf.1.1.scaf01565-processed-gene-0.4 N