D917_07972 (Trichinella nativa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 D917_07972 T152896_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Blimp-1
M03692_2.00 		Drosophila melanogaster
NNYACTTTCVYYN
NRRBGAAAGTRNN		 SELEX
Nitta et al.(2015)
Blimp-1_1 		0.776 0.825
Blimp-1
M06141_2.00 		Drosophila melanogaster
ACTTTCACTTTY
RAAAGTGAAAGT		 B1H
Zhu et al.(2011)
Blimp-1_NAR_FBgn0035625 		0.776 0.825
Blimp-1
M06142_2.00 		Drosophila melanogaster
RCTTTCMCTTTY
RAAAGKGAAAGY		 B1H
Zhu et al.(2011)
Blimp-1_SANGER_5_FBgn0035625 		0.776 0.825
blmp-1
M08103_2.00 		Caenorhabditis elegans
YTYTCHYTTTY
RAAARDGARAR		 ChIP-seq
Mathelier et al.(2014)
MA0537.1 		0.757 0.798
blmp-1
M08195_2.00 		Caenorhabditis elegans
VACTTTCDCY
RGHGAAAGTB		 ChIP-seq
Contrino et al.(2012)
Mw137 		0.757 0.798
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D917_07972 C2H2 ZF 475 497
D917_07972 C2H2 ZF 503 525
D917_07972 C2H2 ZF 531 553
D917_07972 C2H2 ZF 559 581
D917_07972 C2H2 ZF 587 608

Links

Other C2H2 ZF family TFs
Other Trichinella nativa TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
EFV52614 Trichinella spiralis EFV52614 I 0.823
D918_01175 Trichuris suis D918_01175 I 0.806
TMUE_s0064002300 Trichuris muris TMUE_s0064002300 I 0.806
TTRE_0000156401 Trichuris trichiura TTRE_0000156401 I 0.806
ASU_05469 Ascaris suum ASU_05469 I 0.788
TCLT_0000472801 Thelazia callipaeda TCLT_0000472801 I 0.788
TCNE_0001220201 Toxocara canis TCNE_0001220201 I 0.788
ACEP26221 Atta cephalotes ACEP26221 I 0.778
GB51060 Apis mellifera GB51060 I 0.778
RPRC001983 Rhodnius prolixus RPRC001983 I 0.778
SINV14078 Solenopsis invicta SINV14078 I 0.778
Cflo_04377--XP_391847.3_APIME Camponotus floridanus Cflo_04377--XP_391847.3_APIME I 0.778
CLEC009125 Cimex lectularius CLEC009125 I 0.778
HHAL002221-PA Halyomorpha halys HHAL002221-PA I 0.778
CpipJ_CPIJ007425 Culex pipiens CpipJ_CPIJ007425 I 0.776
AAEL004255 Aedes aegypti AAEL004255 I 0.776
AAEL013770 Aedes aegypti AAEL013770 I 0.776
ADAC005262 Anopheles darlingi ADAC005262 I 0.776
AGAP006592 Anopheles gambiae AGAP006592 I 0.776
BGIBMGA000319 Bombyx mori BGIBMGA000319 I 0.776
CPIJ007425 Culex quinquefasciatus CPIJ007425 I 0.776
DAPPUDRAFT_319330 Daphnia pulex DAPPUDRAFT_319330 I 0.776
Blimp-1 Drosophila melanogaster FBgn0035625 D 0.776
GF23985 Drosophila ananassae FBgn0100979 I 0.776
GG15278 Drosophila erecta FBgn0107530 I 0.776
GH16462 Drosophila grimshawi FBgn0123933 I 0.776
GM14713 Drosophila sechellia FBgn0169634 I 0.776
GJ13412 Drosophila virilis FBgn0200637 I 0.776
GK17303 Drosophila willistoni FBgn0219302 I 0.776
GE21501 Drosophila yakuba FBgn0238758 I 0.776
GA23469 Drosophila pseudoobscura FBgn0244871 I 0.776
HMEL007072 Heliconius melpomene HMEL007072 I 0.776
KGM_16647 Danaus plexippus KGM_16647 I 0.776
L798_14234 Zootermopsis nevadensis L798_14234 I 0.776
MCINX009345 Melitaea cinxia MCINX009345 I 0.776
SMAR011793 Strigamia maritima SMAR011793 I 0.776
TC014741 Tribolium castaneum TC014741 I 0.776
LCUP008191 Lucilia cuprina LCUP008191 I 0.776
AATE010559 Anopheles atroparvus AATE010559 I 0.776
ACOM039487 Anopheles coluzzii ACOM039487 I 0.776
ACUA020082 Anopheles culicifacies ACUA020082 I 0.776
AFAF006673 Anopheles farauti AFAF006673 I 0.776
AFUN002606 Anopheles funestus AFUN002606 I 0.776
AMEC005588 Anopheles melas AMEC005588 I 0.776
AMEM000073 Anopheles merus AMEM000073 I 0.776
ASIS005657 Anopheles sinensis ASIS005657 I 0.776
MDOA000384 Musca domestica MDOA000384 I 0.776
PPAI008567 Phlebotomus papatasi PPAI008567 I 0.776
DME_0000608401 Dracunculus medinensis DME_0000608401 I 0.776
EVEC_0000549701 Enterobius vermicularis EVEC_0000549701 I 0.776
SMUV_0001104401 Syphacia muris SMUV_0001104401 I 0.776
WUBG_04696 Wuchereria bancrofti WUBG_04696 I 0.772
Bm3574 Brugia malayi Bm3574 I 0.772
LOAG_11444 Loa loa LOAG_11444 I 0.772
Ppa-blmp-1 Pristionchus pacificus PPA04977 N 0.772
WBGene00238199 Onchocerca volvulus WBGene00238199 I 0.772
BTMF_0000836601 Brugia timori BTMF_0000836601 I 0.772
nDi.2.2.2.g10740 Dirofilaria immitis nDi.2.2.2.g10740 I 0.772
nOo.2.0.1.g07043 Onchocerca ochengi nOo.2.0.1.g07043 I 0.772
scaffold607-EXSNAP2012.2 Pristionchus exspectatus scaffold607-EXSNAP2012.2 N 0.772
nLs.2.1.2.g09168 Litomosoides sigmodontis nLs.2.1.2.g09168 I 0.770
Hba_09212 Heterorhabditis bacteriophora Hba_09212 I 0.769
Minc14190 Meloidogyne incognita Minc14190 N 0.768
MhA1_Contig1748.frz3.gene3 Meloidogyne hapla MhA1_Contig1748.frz3.gene3 N 0.768
NV12817 Nasonia vitripennis NV12817 I 0.766
PHUM607020 Pediculus humanus PHUM607020 I 0.766
ANCCAN_13506 Ancylostoma caninum ANCCAN_13506 I 0.766
ANCCEY_05862 Ancylostoma ceylanicum ANCCEY_05862 I 0.766
ANCDUO_02710 Ancylostoma duodenale ANCDUO_02710 I 0.766
HCOI00760100 Haemonchus contortus HCOI00760100 I 0.766
HPLM_0001789201 Haemonchus placei HPLM_0001789201 I 0.766
NBR_0002088601 Nippostrongylus brasiliensis NBR_0002088601 I 0.766
TELCIR_19105 Teladorsagia circumcincta TELCIR_19105 I 0.766
L596_g21750 Steinernema carpocapsae L596_g21750 I 0.758
L889_g7623 Steinernema feltiae L889_g7623 I 0.758
L892_g2443 Steinernema scapterisci L892_g2443 I 0.758
L893_g23908 Steinernema glaseri L893_g23908 I 0.758
L898_g18820 Steinernema monticolum L898_g18820 I 0.758
CBG02201 Caenorhabditis briggsae CBG02201 I 0.757
CBN18993 Caenorhabditis brenneri CBN18993 I 0.757
CRE29848 Caenorhabditis remanei CRE29848 I 0.757
blmp-1 Caenorhabditis elegans WBGene00003847 D 0.757
LDEC016433 Leptinotarsa decemlineata LDEC016433 I 0.757
snap_masked-nMf.1.1.scaf01565-processed-gene-0.4 Meloidogyne floridensis snap_masked-nMf.1.1.scaf01565-processed-gene-0.4 N 0.756