CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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D917_07972
(
Trichinella nativa
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
D917_07972
T152896_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Blimp-1
M03692_2.00
Drosophila melanogaster
NNYACTTTCVYYN
NRRBGAAAGTRNN
SELEX
Nitta et al.(2015)
Blimp-1_1
0.776
0.825
Blimp-1
M06141_2.00
Drosophila melanogaster
ACTTTCACTTTY
RAAAGTGAAAGT
B1H
Zhu et al.(2011)
Blimp-1_NAR_FBgn0035625
0.776
0.825
Blimp-1
M06142_2.00
Drosophila melanogaster
RCTTTCMCTTTY
RAAAGKGAAAGY
B1H
Zhu et al.(2011)
Blimp-1_SANGER_5_FBgn0035625
0.776
0.825
blmp-1
M08103_2.00
Caenorhabditis elegans
YTYTCHYTTTY
RAAARDGARAR
ChIP-seq
Mathelier et al.(2014)
MA0537.1
0.757
0.798
blmp-1
M08195_2.00
Caenorhabditis elegans
VACTTTCDCY
RGHGAAAGTB
ChIP-seq
Contrino et al.(2012)
Mw137
0.757
0.798
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
D917_07972
C2H2 ZF
475
497
YECDQCSKVFGQLSNLKVHMRTH
D917_07972
C2H2 ZF
503
525
FKCNVCGKEFTQLAHLQKHNLVH
D917_07972
C2H2 ZF
531
553
HRCEVCHKRFSSTSNLKTHLRLH
D917_07972
C2H2 ZF
559
581
YACDACPSKFTQFVHLKLHKRLH
D917_07972
C2H2 ZF
587
608
YNCNTCNKKYISPSGLRTHWRT
Links
Other
C2H2 ZF
family TFs
Other
Trichinella nativa
TFs
84 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
EFV52614
Trichinella spiralis
EFV52614
I
0.823
D918_01175
Trichuris suis
D918_01175
I
0.806
TMUE_s0064002300
Trichuris muris
TMUE_s0064002300
I
0.806
TTRE_0000156401
Trichuris trichiura
TTRE_0000156401
I
0.806
ASU_05469
Ascaris suum
ASU_05469
I
0.788
TCLT_0000472801
Thelazia callipaeda
TCLT_0000472801
I
0.788
TCNE_0001220201
Toxocara canis
TCNE_0001220201
I
0.788
ACEP26221
Atta cephalotes
ACEP26221
I
0.778
GB51060
Apis mellifera
GB51060
I
0.778
RPRC001983
Rhodnius prolixus
RPRC001983
I
0.778
SINV14078
Solenopsis invicta
SINV14078
I
0.778
Cflo_04377--XP_391847.3_APIME
Camponotus floridanus
Cflo_04377--XP_391847.3_APIME
I
0.778
CLEC009125
Cimex lectularius
CLEC009125
I
0.778
HHAL002221-PA
Halyomorpha halys
HHAL002221-PA
I
0.778
CpipJ_CPIJ007425
Culex pipiens
CpipJ_CPIJ007425
I
0.776
AAEL004255
Aedes aegypti
AAEL004255
I
0.776
AAEL013770
Aedes aegypti
AAEL013770
I
0.776
ADAC005262
Anopheles darlingi
ADAC005262
I
0.776
AGAP006592
Anopheles gambiae
AGAP006592
I
0.776
BGIBMGA000319
Bombyx mori
BGIBMGA000319
I
0.776
CPIJ007425
Culex quinquefasciatus
CPIJ007425
I
0.776
DAPPUDRAFT_319330
Daphnia pulex
DAPPUDRAFT_319330
I
0.776
Blimp-1
Drosophila melanogaster
FBgn0035625
D
0.776
GF23985
Drosophila ananassae
FBgn0100979
I
0.776
GG15278
Drosophila erecta
FBgn0107530
I
0.776
GH16462
Drosophila grimshawi
FBgn0123933
I
0.776
GM14713
Drosophila sechellia
FBgn0169634
I
0.776
GJ13412
Drosophila virilis
FBgn0200637
I
0.776
GK17303
Drosophila willistoni
FBgn0219302
I
0.776
GE21501
Drosophila yakuba
FBgn0238758
I
0.776
GA23469
Drosophila pseudoobscura
FBgn0244871
I
0.776
HMEL007072
Heliconius melpomene
HMEL007072
I
0.776
KGM_16647
Danaus plexippus
KGM_16647
I
0.776
L798_14234
Zootermopsis nevadensis
L798_14234
I
0.776
MCINX009345
Melitaea cinxia
MCINX009345
I
0.776
SMAR011793
Strigamia maritima
SMAR011793
I
0.776
TC014741
Tribolium castaneum
TC014741
I
0.776
LCUP008191
Lucilia cuprina
LCUP008191
I
0.776
AATE010559
Anopheles atroparvus
AATE010559
I
0.776
ACOM039487
Anopheles coluzzii
ACOM039487
I
0.776
ACUA020082
Anopheles culicifacies
ACUA020082
I
0.776
AFAF006673
Anopheles farauti
AFAF006673
I
0.776
AFUN002606
Anopheles funestus
AFUN002606
I
0.776
AMEC005588
Anopheles melas
AMEC005588
I
0.776
AMEM000073
Anopheles merus
AMEM000073
I
0.776
ASIS005657
Anopheles sinensis
ASIS005657
I
0.776
MDOA000384
Musca domestica
MDOA000384
I
0.776
PPAI008567
Phlebotomus papatasi
PPAI008567
I
0.776
DME_0000608401
Dracunculus medinensis
DME_0000608401
I
0.776
EVEC_0000549701
Enterobius vermicularis
EVEC_0000549701
I
0.776
SMUV_0001104401
Syphacia muris
SMUV_0001104401
I
0.776
WUBG_04696
Wuchereria bancrofti
WUBG_04696
I
0.772
Bm3574
Brugia malayi
Bm3574
I
0.772
LOAG_11444
Loa loa
LOAG_11444
I
0.772
Ppa-blmp-1
Pristionchus pacificus
PPA04977
N
0.772
WBGene00238199
Onchocerca volvulus
WBGene00238199
I
0.772
BTMF_0000836601
Brugia timori
BTMF_0000836601
I
0.772
nDi.2.2.2.g10740
Dirofilaria immitis
nDi.2.2.2.g10740
I
0.772
nOo.2.0.1.g07043
Onchocerca ochengi
nOo.2.0.1.g07043
I
0.772
scaffold607-EXSNAP2012.2
Pristionchus exspectatus
scaffold607-EXSNAP2012.2
N
0.772
nLs.2.1.2.g09168
Litomosoides sigmodontis
nLs.2.1.2.g09168
I
0.770
Hba_09212
Heterorhabditis bacteriophora
Hba_09212
I
0.769
Minc14190
Meloidogyne incognita
Minc14190
N
0.768
MhA1_Contig1748.frz3.gene3
Meloidogyne hapla
MhA1_Contig1748.frz3.gene3
N
0.768
NV12817
Nasonia vitripennis
NV12817
I
0.766
PHUM607020
Pediculus humanus
PHUM607020
I
0.766
ANCCAN_13506
Ancylostoma caninum
ANCCAN_13506
I
0.766
ANCCEY_05862
Ancylostoma ceylanicum
ANCCEY_05862
I
0.766
ANCDUO_02710
Ancylostoma duodenale
ANCDUO_02710
I
0.766
HCOI00760100
Haemonchus contortus
HCOI00760100
I
0.766
HPLM_0001789201
Haemonchus placei
HPLM_0001789201
I
0.766
NBR_0002088601
Nippostrongylus brasiliensis
NBR_0002088601
I
0.766
TELCIR_19105
Teladorsagia circumcincta
TELCIR_19105
I
0.766
L596_g21750
Steinernema carpocapsae
L596_g21750
I
0.758
L889_g7623
Steinernema feltiae
L889_g7623
I
0.758
L892_g2443
Steinernema scapterisci
L892_g2443
I
0.758
L893_g23908
Steinernema glaseri
L893_g23908
I
0.758
L898_g18820
Steinernema monticolum
L898_g18820
I
0.758
CBG02201
Caenorhabditis briggsae
CBG02201
I
0.757
CBN18993
Caenorhabditis brenneri
CBN18993
I
0.757
CRE29848
Caenorhabditis remanei
CRE29848
I
0.757
blmp-1
Caenorhabditis elegans
WBGene00003847
D
0.757
LDEC016433
Leptinotarsa decemlineata
LDEC016433
I
0.757
snap_masked-nMf.1.1.scaf01565-processed-gene-0.4
Meloidogyne floridensis
snap_masked-nMf.1.1.scaf01565-processed-gene-0.4
N
0.756