CBN18993 (Caenorhabditis brenneri)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 CBN18993 T083050_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
blmp-1
M08103_2.00 		Caenorhabditis elegans
YTYTCHYTTTY
RAAARDGARAR		 ChIP-seq
Mathelier et al.(2014)
MA0537.1 		0.827 1.000
blmp-1
M08195_2.00 		Caenorhabditis elegans
VACTTTCDCY
RGHGAAAGTB		 ChIP-seq
Contrino et al.(2012)
Mw137 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN18993 C2H2 ZF 510 532
CBN18993 C2H2 ZF 538 560
CBN18993 C2H2 ZF 566 588
CBN18993 C2H2 ZF 594 616
CBN18993 C2H2 ZF 622 643

Links

Other C2H2 ZF family TFs
Other Caenorhabditis brenneri TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBG02201 Caenorhabditis briggsae CBG02201 I 0.827
blmp-1 Caenorhabditis elegans WBGene00003847 D 0.827
CRE29848 Caenorhabditis remanei CRE29848 I 0.825
Hba_09212 Heterorhabditis bacteriophora Hba_09212 I 0.799
ANCCAN_13506 Ancylostoma caninum ANCCAN_13506 I 0.797
ANCCEY_05862 Ancylostoma ceylanicum ANCCEY_05862 I 0.797
ANCDUO_02710 Ancylostoma duodenale ANCDUO_02710 I 0.797
HCOI00760100 Haemonchus contortus HCOI00760100 I 0.797
HPLM_0001789201 Haemonchus placei HPLM_0001789201 I 0.797
NBR_0002088601 Nippostrongylus brasiliensis NBR_0002088601 I 0.797
TELCIR_19105 Teladorsagia circumcincta TELCIR_19105 I 0.797
L596_g21750 Steinernema carpocapsae L596_g21750 I 0.770
L889_g7623 Steinernema feltiae L889_g7623 I 0.770
L892_g2443 Steinernema scapterisci L892_g2443 I 0.770
L893_g23908 Steinernema glaseri L893_g23908 I 0.770
L898_g18820 Steinernema monticolum L898_g18820 I 0.770
D917_07972 Trichinella nativa D917_07972 I 0.757
D918_01175 Trichuris suis D918_01175 I 0.757
TMUE_s0064002300 Trichuris muris TMUE_s0064002300 I 0.757
TTRE_0000156401 Trichuris trichiura TTRE_0000156401 I 0.757