LCUP004919 (Lucilia cuprina)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 LCUP004919 T307119_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
eg
M03927_2.00 		Drosophila melanogaster
NAAAYTRGAKCA
TGMTCYARTTTN		 SELEX
Nitta et al.(2015)
eg_1 		0.985 0.971
eg
M06415_2.00 		Drosophila melanogaster
RAAANTAGRGCAV
BTGCYCTANTTTY		 B1H
Zhu et al.(2011)
eg_SANGER_5_FBgn0000560 		0.985 0.971
AGAP010438
M02389_2.00 		Anopheles gambiae
NRGDKCRNN
NNYGMHCYN		 PBM
Weirauch et al.(2014)
pTH6429 		0.979 0.871
knrl
M03930_2.00 		Drosophila melanogaster
AWNTRGRKCAN
NTGMYCYANWT		 SELEX
Nitta et al.(2015)
knrl_1 		0.977 0.857
knrl
M03931_2.00 		Drosophila melanogaster
AWBBGTAACR
YGTTACVVWT		 SELEX
Nitta et al.(2015)
knrl_2 		0.977 0.857
knrl
M06422_2.00 		Drosophila melanogaster
AAABTRGRKCA
TGMYCYAVTTT		 B1H
Zhu et al.(2011)
knrl_SANGER_5_FBgn0001323 		0.977 0.857
kni
M06557_2.00 		Drosophila melanogaster
AAWNTAGRGCAV
BTGCYCTANWTT		 B1H
Mathelier et al.(2014)
MA0451.1 		0.971 0.829
kni
M06419_2.00 		Drosophila melanogaster
RAWNKVGNWC
GWNCBMNWTY		 B1H
Zhu et al.(2011)
kni_FlyReg_FBgn0001320 		0.971 0.829
kni
M06420_2.00 		Drosophila melanogaster
AAWNTAGRGCAV
BTGCYCTANWTT		 B1H
Zhu et al.(2011)
kni_NAR_FBgn0001320 		0.971 0.829
kni
M06421_2.00 		Drosophila melanogaster
RWAANTRGRNCA
TGNYCYANTTWY		 B1H
Zhu et al.(2011)
kni_SANGER_5_FBgn0001320 		0.971 0.829
kni
M08225_2.00 		Drosophila melanogaster
YAGNGYTGYC
GRCARCNCTR		 ChIP-seq
Contrino et al.(2012)
Mf24 		0.971 0.829
kni
M09687_2.00 		Drosophila melanogaster
NAAWNKRGADCAV
BTGHTCYMNWTTN		 Misc
Kulakovskiy et al.(2009)
kni 		0.971 0.829
kni
M11189_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$KNI_Q6 		0.971 0.829
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LCUP004919-PA Nuclear receptor 3 85

Links

Other Nuclear receptor family TFs
Other Lucilia cuprina TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VIT_17s0000g03540 Vitis vinifera VIT_17s0000g03540 N
PK06741.1 Cannabis sativa PK06741.1 N
Thhalv10010289m.g Eutrema salsugineum Thhalv10010289m.g N
SapurV1A.0493s0270 Salix purpurea SapurV1A.0493s0270 N
MDP0000312273 Malus domestica MDP0000312273 N
Lus10002159.g Linum usitatissimum Lus10002159.g N
evm.TU.supercontig_129.20 Carica papaya evm.TU.supercontig_129.20 N
Carubv10016941m.g Capsella rubella Carubv10016941m.g N
Cagra.0612s0070 Capsella grandiflora Cagra.0612s0070 N
Bostr.11793s0050 Boechera stricta Bostr.11793s0050 N
mgf021292m Mimulus guttatus mgf021292m N
28179.m000458 Ricinus communis 28179.m000458 N
Pm002284 Prunus mume Pm002284 N
AMTR_s00044p00144500 Amborella trichopoda AMTR_s00044p00144500 N
PRUPE_ppa003947mg Prunus persica PRUPE_ppa003947mg N
POPTR_0018s04230 Populus trichocarpa POPTR_0018s04230 N
ORUFI01G23320 Oryza rufipogon ORUFI01G23320 N
OPUNC01G20840 Oryza punctata OPUNC01G20840 N
ONIVA01G23240 Oryza nivara ONIVA01G23240 N
OGLUM01G24300 Oryza glumaepatula OGLUM01G24300 N
OBART01G20650 Oryza barthii OBART01G20650 N
MTR_7g076850 Medicago truncatula MTR_7g076850 N
fgenesh2_kg.5__1710__AT3G53440.2 Arabidopsis lyrata fgenesh2_kg.5__1710__AT3G53440.2 N
BRADI3G07987 Brachypodium distachyon BRADI3G07987 N
Bo8g082820 Brassica oleracea Bo8g082820 N
AT3G53440 Arabidopsis thaliana AT3G53440 N