PTRK_0000194200 (Parastrongyloides trichosuri)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 PTRK_0000194200 T309996_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-1
M00686_2.00 		Caenorhabditis elegans
ARTGATCA
TGATCAYT		 PBM
Narasimhan et al.(2015)
pTH9322 		0.913 0.629
nhr-49
M02413_2.00 		Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN		 PBM
Weirauch et al.(2014)
pTH5891 		0.772 0.571
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PTRK_0000194200.1 Nuclear receptor 9 78

Links

Other Nuclear receptor family TFs
Other Parastrongyloides trichosuri TFs

222 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB124 Arabidopsis thaliana AT1G14350 D
MYB88 Arabidopsis thaliana AT2G02820 D
Ciclev10031405m.g Citrus clementina Ciclev10031405m.g I
Traes_2BS_F1B450FA4 Triticum aestivum Traes_2BS_F1B450FA4 I
Carubv10017119m.g Capsella rubella Carubv10017119m.g I
Carubv10011707m.g Capsella rubella Carubv10011707m.g I
Cagra.3501s0066 Capsella grandiflora Cagra.3501s0066 I
Cagra.0534s0022 Capsella grandiflora Cagra.0534s0022 I
Bostr.13671s0016 Boechera stricta Bostr.13671s0016 I
Bostr.0556s0099 Boechera stricta Bostr.0556s0099 I
Aquca_002_00543 Aquilegia coerulea Aquca_002_00543 I
mgf009409m Mimulus guttatus mgf009409m I
Cucsa.285270 Cucumis sativus Cucsa.285270 I
cassava35260.valid.m1 Manihot esculenta cassava35260.valid.m1 I
29736.m002013 Ricinus communis 29736.m002013 I
Pm006532 Prunus mume Pm006532 I
Cla010333 Citrullus lanatus Cla010333 I
Ca_18779 Cicer arietinum Ca_18779 I
VIT_01s0026g01910 Vitis vinifera VIT_01s0026g01910 I
Traes_2DS_9430AAD52 Triticum aestivum Traes_2DS_9430AAD52 I
PDK_20s1473891g001 Phoenix dactylifera PDK_20s1473891g001 I
orange1.1g044977m.g Citrus sinensis orange1.1g044977m.g I
AMTR_s00010p00252990 Amborella trichopoda AMTR_s00010p00252990 I
PK05123.1 Cannabis sativa PK05123.1 I
Thhalv10007659m.g Eutrema salsugineum Thhalv10007659m.g I
Thhalv10004109m.g Eutrema salsugineum Thhalv10004109m.g I
SapurV1A.0200s0020 Salix purpurea SapurV1A.0200s0020 I
SapurV1A.0062s0030 Salix purpurea SapurV1A.0062s0030 I
Pavir.J36475 Panicum virgatum Pavir.J36475 I
Pavir.Bb03405 Panicum virgatum Pavir.Bb03405 I
Eucgr.B03417 Eucalyptus grandis Eucgr.B03417 I
MDP0000210970 Malus domestica MDP0000210970 I
MDP0000165523 Malus domestica MDP0000165523 I
Lus10030494.g Linum usitatissimum Lus10030494.g I
Lus10012847.g Linum usitatissimum Lus10012847.g I
Gorai.013G083300 Gossypium raimondii Gorai.013G083300 I
Gorai.005G139500 Gossypium raimondii Gorai.005G139500 I
evm.TU.supercontig_183.27 Carica papaya evm.TU.supercontig_183.27 I
Eucgr.G02522 Eucalyptus grandis Eucgr.G02522 I
GLYMA01G05190 Glycine max GLYMA01G05190 I
MTR_8g468380 Medicago truncatula MTR_8g468380 I
MTR_5g038910 Medicago truncatula MTR_5g038910 I
LPERR07G19800 Leersia perrieri LPERR07G19800 I
GSMUA_Achr6G10650_001 Musa acuminata GSMUA_Achr6G10650_001 I
GSMUA_Achr10G18880_001 Musa acuminata GSMUA_Achr10G18880_001 I
GRMZM2G064630 Zea mays GRMZM2G064630 I
GLYMA18G16040 Glycine max GLYMA18G16040 I
GLYMA08G40950 Glycine max GLYMA08G40950 I
GLYMA02G02310 Glycine max GLYMA02G02310 I
OB07G28520 Oryza brachyantha OB07G28520 I
MYB88 Arabidopsis lyrata fgenesh2_kg.5__181__AT2G02820.2 I
FLP Arabidopsis lyrata fgenesh2_kg.1__1561__AT1G14350.1 I
Bra024804 Brassica rapa Bra024804 I
Bra019658 Brassica rapa Bra019658 I
Bo7g080730 Brassica oleracea Bo7g080730 I
Bo5g019500 Brassica oleracea Bo5g019500 I
Bo2g136560 Brassica oleracea Bo2g136560 I
BGIOSGA026188 Oryza indica BGIOSGA026188 I
PGSC0003DMG400026758 Solanum tuberosum PGSC0003DMG400026758 I
TCM_011776 Theobroma cacao TCM_011776 I
Solyc05g007160.2 Solanum lycopersicum Solyc05g007160.2 I
Solyc04g005710.1 Solanum lycopersicum Solyc04g005710.1 I
Si029124m.g Setaria italica Si029124m.g I
Sb02g040050 Sorghum bicolor Sb02g040050 I
PRUPE_ppa017536mg Prunus persica PRUPE_ppa017536mg I
POPTR_0010s10310 Populus trichocarpa POPTR_0010s10310 I
POPTR_0008s14790 Populus trichocarpa POPTR_0008s14790 I
Traes_2AS_1161E1D2E Triticum aestivum Traes_2AS_1161E1D2E I
PGSC0003DMG400025612 Solanum tuberosum PGSC0003DMG400025612 I
PGSC0003DMG400002828 Solanum tuberosum PGSC0003DMG400002828 I
OS07G0627300 Oryza sativa OS07G0627300 I
ORUFI07G24080 Oryza rufipogon ORUFI07G24080 I
ORGLA07G0179200 Oryza glaberrima ORGLA07G0179200 I
OPUNC07G21540 Oryza punctata OPUNC07G21540 I
OGLUM07G22980 Oryza glumaepatula OGLUM07G22980 I
OBART07G22930 Oryza barthii OBART07G22930 I