scaffold395-EXSNAP2012.23 (Pristionchus exspectatus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 scaffold395-EXSNAP2012.23 T310253_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-34
M00690_2.00 		Caenorhabditis elegans
NNNNDHYRNN
NNYRDHNNNN		 PBM
Narasimhan et al.(2015)
pTH9907 		0.817 0.514
GA30480
M02409_2.00 		Drosophila pseudoobscura
RAGATCAM
KTGATCTY		 PBM
Weirauch et al.(2014)
pTH5877 		0.802 0.571
Hr51
M06432_2.00 		Drosophila melanogaster
AMRDATCARARGW
WCYTYTGATHYKT		 B1H
Zhu et al.(2011)
Hr51_SANGER_5_FBgn0034012 		0.802 0.571
NR2E3
M00373_2.00 		Homo sapiens
NRAGATCAMN
NKTGATCTYN		 PBM
Barrera et al.(2016)
NR2E3_REF 		0.782 0.543
Nr2e3
M02708_2.00 		Mus musculus
AAGCTTD
HAAGCTT		 SELEX
Mathelier et al.(2014)
MA0164.1 		0.782 0.543
Nr2e3
M09328_2.00 		Mus musculus
NAAGTCAAAARKCA
TGMYTTTTGACTTN		 Misc
Kulakovskiy et al.(2013)
NR2E3_MOUSE.H11MO.0.C 		0.782 0.543
NR2E3
M00372_2.00 		Homo sapiens
AAAGATCA
TGATCTTT		 PBM
Barrera et al.(2016)
NR2E3_R77Q 		0.782 0.543
NR2E3
M00370_2.00 		Homo sapiens
NNNWRABATCANN
NNTGATVTYWNNN		 PBM
Barrera et al.(2016)
NR2E3_R76Q 		0.755 0.529
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold395-EXSNAP2012.23 Nuclear receptor 39 108

Links

Other Nuclear receptor family TFs
Other Pristionchus exspectatus TFs

229 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Myb Drosophila melanogaster FBgn0002914 D
AAEL014286 Aedes aegypti AAEL014286 I
PPAI005590 Phlebotomus papatasi PPAI005590 I
MDOA009261 Musca domestica MDOA009261 I
LLOJ006683 Lutzomyia longipalpis LLOJ006683 I
AALB001524 Anopheles albimanus AALB001524 I
LCUP002256 Lucilia cuprina LCUP002256 I
HMEL017165 Heliconius melpomene HMEL017165 I
GK16252 Drosophila willistoni FBgn0218254 I
GJ18431 Drosophila virilis FBgn0205590 I
GD24674 Drosophila simulans FBgn0196001 I
GM22518 Drosophila sechellia FBgn0177388 I
GI14170 Drosophila mojavensis FBgn0136923 I
CpipJ_CPIJ004862 Culex pipiens CpipJ_CPIJ004862 I
ADAC005010 Anopheles darlingi ADAC005010 I
CPIJ004862 Culex quinquefasciatus CPIJ004862 I
GG19364 Drosophila erecta FBgn0111568 I
GL24710 Drosophila persimilis FBgn0162298 I
GH11855 Drosophila grimshawi FBgn0119334 I
GF19984 Drosophila ananassae FBgn0096991 I
AFAF000916 Anopheles farauti AFAF000916 N
ACYPI005393 Acyrthosiphon pisum ACYPI005393 N
KGM_15963 Danaus plexippus KGM_15963 N
ASTEI09594 Anopheles stephensi ASTEI09594 N
ASIS021966 Anopheles sinensis ASIS021966 N
AQUA000993 Anopheles quadriannulatus AQUA000993 N
AMIN006115 Anopheles minimus AMIN006115 N
AMEM015420 Anopheles merus AMEM015420 N
AMEC009973 Anopheles melas AMEC009973 N
AFUN003983 Anopheles funestus AFUN003983 N
L798_09102 Zootermopsis nevadensis L798_09102 N
AEPI008902 Anopheles epiroticus AEPI008902 N
ADIR011315 Anopheles dirus ADIR011315 N
ACUA005970 Anopheles culicifacies ACUA005970 N
ACOM030425 Anopheles coluzzii ACOM030425 N
ACHR001068 Anopheles christyi ACHR001068 N
AARA004970 Anopheles arabiensis AARA004970 N
AGAP008160 Anopheles gambiae AGAP008160 N
BGIBMGA013826 Bombyx mori BGIBMGA013826 N
TC030738 Tribolium castaneum TC030738 N
PHUM518530 Pediculus humanus PHUM518530 N