rel.S (Xenopus laevis)
Rel

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00554 (RHD_DNA_bind) IPR011539 XB-GENE-17342653 T317862_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
REL
M02710_2.00 		Homo sapiens
BGGRNWTTCC
GGAAWNYCCV		 SELEX
Mathelier et al.(2014)
MA0101.1 		0.781 0.781
REL
M09350_2.00 		Homo sapiens
TGKVMTTYCCCHDBH
DVHDGGGRAAKBMCA		 Misc
Kulakovskiy et al.(2013)
REL_HUMAN.H11MO.0.B 		0.781 0.781
REL
M11235_2.00 		Homo sapiens
BGGRNWTTCC
GGAAWNYCCV		 Transfac
Matys et al.(2006)
V$CREL_01 		0.781 0.781
REL
M11236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CREL_Q6 		0.781 0.781
Rel
M09353_2.00 		Mus musculus
TGKVMTTYCCCHDBH
DVHDGGGRAAKBMCA		 Misc
Kulakovskiy et al.(2013)
REL_MOUSE.H11MO.0.A 		0.769 0.769
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAC18087 Rel 9 174
AAI70187 Rel 9 177

Links

Other Rel family TFs
Other Xenopus laevis TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000375005 Malus domestica MDP0000375005 N
Cagra.2117s0012 Capsella grandiflora Cagra.2117s0012 N
Carubv10001713m.g Capsella rubella Carubv10001713m.g N
Carubv10014086m.g Capsella rubella Carubv10014086m.g N
Ciclev10012232m.g Citrus clementina Ciclev10012232m.g N
Eucgr.A02570 Eucalyptus grandis Eucgr.A02570 N
evm.TU.supercontig_104.9 Carica papaya evm.TU.supercontig_104.9 N
gene18295-v1.0-hybrid Fragaria vesca gene18295-v1.0-hybrid N
Gorai.002G234400 Gossypium raimondii Gorai.002G234400 N
Gorai.007G363800 Gossypium raimondii Gorai.007G363800 N
Lus10013592.g Linum usitatissimum Lus10013592.g N
Lus10021259.g Linum usitatissimum Lus10021259.g N
MDP0000129029 Malus domestica MDP0000129029 N
Cagra.2108s0005 Capsella grandiflora Cagra.2108s0005 N
MDP0000588222 Malus domestica MDP0000588222 N
MDP0000785523 Malus domestica MDP0000785523 N
MDP0000948645 Malus domestica MDP0000948645 N
orange1.1g021081m.g Citrus sinensis orange1.1g021081m.g N
SapurV1A.0258s0010 Salix purpurea SapurV1A.0258s0010 N
SapurV1A.0980s0030 Salix purpurea SapurV1A.0980s0030 N
SapurV1A.1209s0040 Salix purpurea SapurV1A.1209s0040 N
Thhalv10014346m.g Eutrema salsugineum Thhalv10014346m.g N
PK26326.1 Cannabis sativa PK26326.1 N
chr1.CM0361.430.nc Lotus japonicus chr1.CM0361.430.nc N
chr5.CM0571.20.nd Lotus japonicus chr5.CM0571.20.nd N
Solyc01g006930.2 Solanum lycopersicum Solyc01g006930.2 N
GLYMA02G35190 Glycine max GLYMA02G35190 N
GLYMA03G36140 Glycine max GLYMA03G36140 N
GLYMA10G10240 Glycine max GLYMA10G10240 N
GLYMA19G38800 Glycine max GLYMA19G38800 N
MTR_1g056530 Medicago truncatula MTR_1g056530 N
MTR_7g106450 Medicago truncatula MTR_7g106450 N
PGSC0003DMG400021365 Solanum tuberosum PGSC0003DMG400021365 N
POPTR_0006s21640 Populus trichocarpa POPTR_0006s21640 N
POPTR_0016s06860 Populus trichocarpa POPTR_0016s06860 N
PRUPE_ppa017366mg Prunus persica PRUPE_ppa017366mg N
NF-YA10 Arabidopsis lyrata scaffold_600636.1 N
NFYA10 Arabidopsis thaliana AT5G06510 N
TCM_022984 Theobroma cacao TCM_022984 N
VIT_08s0032g01190 Vitis vinifera VIT_08s0032g01190 N
Ca_00866 Cicer arietinum Ca_00866 N
Ca_14455 Cicer arietinum Ca_14455 N
Cla017884 Citrullus lanatus Cla017884 N
Pm026038 Prunus mume Pm026038 N
29333.m001059 Ricinus communis 29333.m001059 N
cassava41983.valid.m1 Manihot esculenta cassava41983.valid.m1 N
Cucsa.241980 Cucumis sativus Cucsa.241980 N
mgf025421m Mimulus guttatus mgf025421m N
Bostr.13129s0320 Boechera stricta Bostr.13129s0320 N