RFX7 (Tetraodon nigroviridis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSTNIG00000013706 T318539_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.771 0.899
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.771 0.899
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.771 0.899
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.771 0.899
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.712 0.633
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.712 0.633
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.712 0.633
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.712 0.633
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.712 0.633
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.712 0.633
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.712 0.633
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.712 0.633
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.712 0.633
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.712 0.633
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.712 0.633
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.712 0.633
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.712 0.633
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.712 0.633
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.712 0.633
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000016706 RFX 8 87

Links

Other RFX family TFs
Other Tetraodon nigroviridis TFs

248 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WRKY70 Arabidopsis thaliana AT3G56400 D
AMTR_s00077p00103580 Amborella trichopoda AMTR_s00077p00103580 I
AMTR_s00077p00103880 Amborella trichopoda AMTR_s00077p00103880 I
WRKY54 Arabidopsis thaliana AT2G40750 I
BGIOSGA019621 Oryza indica BGIOSGA019621 I
BGIOSGA030535 Oryza indica BGIOSGA030535 I
BGIOSGA040489 Oryza indica BGIOSGA040489 I
Bo00913s010 Brassica oleracea Bo00913s010 I
Bo3g035130 Brassica oleracea Bo3g035130 I
Bo3g035140 Brassica oleracea Bo3g035140 I
Bo4g012750 Brassica oleracea Bo4g012750 I
Bo4g190390 Brassica oleracea Bo4g190390 I
Bo6g066790 Brassica oleracea Bo6g066790 I
Bo6g071110 Brassica oleracea Bo6g071110 I
Bo8g090820 Brassica oleracea Bo8g090820 I
Bra000202 Brassica rapa Bra000202 I
Bra000203 Brassica rapa Bra000203 I
Bra003239 Brassica rapa Bra003239 I
Bra004586 Brassica rapa Bra004586 I
Bra007243 Brassica rapa Bra007243 I
Bra014692 Brassica rapa Bra014692 I
Bra016974 Brassica rapa Bra016974 I
Bra016975 Brassica rapa Bra016975 I
BRADI1G63220 Brachypodium distachyon BRADI1G63220 I
BRADI2G30695 Brachypodium distachyon BRADI2G30695 I
BRADI2G44270 Brachypodium distachyon BRADI2G44270 I
BRADI3G34850 Brachypodium distachyon BRADI3G34850 I
F775_25840 Aegilops tauschii F775_25840 I
F775_32858 Aegilops tauschii F775_32858 I
WRKY70 Arabidopsis lyrata fgenesh2_kg.5__2072__AT3G56400.1 I
GLYMA03G00460 Glycine max GLYMA03G00460 I
GLYMA04G40121 Glycine max GLYMA04G40121 I
GLYMA04G40130 Glycine max GLYMA04G40130 I
GLYMA06G14720 Glycine max GLYMA06G14720 I
GLYMA09G41050 Glycine max GLYMA09G41050 I
GLYMA14G36430 Glycine max GLYMA14G36430 I
GLYMA14G36438 Glycine max GLYMA14G36438 I
GLYMA14G36446 Glycine max GLYMA14G36446 I
GLYMA16G34590 Glycine max GLYMA16G34590 I
GLYMA18G44560 Glycine max GLYMA18G44560 I
GRMZM2G004060 Zea mays GRMZM2G004060 I
GRMZM2G025895 Zea mays GRMZM2G025895 I
GRMZM2G061408 Zea mays GRMZM2G061408 I
GRMZM2G163418 Zea mays GRMZM2G163418 I
GSMUA_Achr1G27980_001 Musa acuminata GSMUA_Achr1G27980_001 I
GSMUA_Achr5G07490_001 Musa acuminata GSMUA_Achr5G07490_001 I
GSMUA_Achr8G01730_001 Musa acuminata GSMUA_Achr8G01730_001 I
LPERR03G14340 Leersia perrieri LPERR03G14340 I
LPERR05G09130 Leersia perrieri LPERR05G09130 I
LPERR09G04330 Leersia perrieri LPERR09G04330 I
LPERR11G00960 Leersia perrieri LPERR11G00960 I
LPERR12G01070 Leersia perrieri LPERR12G01070 I
MLOC_66134 Hordeum vulgare MLOC_66134 I
MLOC_71897 Hordeum vulgare MLOC_71897 I
MLOC_74974 Hordeum vulgare MLOC_74974 I
MTR_3g093830 Medicago truncatula MTR_3g093830 I
MTR_5g067700 Medicago truncatula MTR_5g067700 I
MTR_7g073380 Medicago truncatula MTR_7g073380 I
OB03G26140 Oryza brachyantha OB03G26140 I
OB05G17240 Oryza brachyantha OB05G17240 I
OBART05G11710 Oryza barthii OBART05G11710 I
OGLUM05G12430 Oryza glumaepatula OGLUM05G12430 I
OGLUM07G10380 Oryza glumaepatula OGLUM07G10380 I
OGLUM11G00850 Oryza glumaepatula OGLUM11G00850 I
OMERI05G10380 Oryza meridionalis OMERI05G10380 I
OMERI08G11390 Oryza meridionalis OMERI08G11390 I
ONIVA05G12100 Oryza nivara ONIVA05G12100 I
ONIVA08G13920 Oryza nivara ONIVA08G13920 I
ONIVA09G05410 Oryza nivara ONIVA09G05410 I
OPUNC05G10020 Oryza punctata OPUNC05G10020 I
OPUNC09G05480 Oryza punctata OPUNC09G05480 I
ORGLA05G0099400 Oryza glaberrima ORGLA05G0099400 I
ORGLA08G0116200 Oryza glaberrima ORGLA08G0116200 I
ORUFI05G12710 Oryza rufipogon ORUFI05G12710 I
ORUFI08G15010 Oryza rufipogon ORUFI08G15010 I
ORUFI09G06720 Oryza rufipogon ORUFI09G06720 I
OS05G0322900 Oryza sativa OS05G0322900 I
OS08G0386200 Oryza sativa OS08G0386200 I
OS09G0334500 Oryza sativa OS09G0334500 I
PGSC0003DMG400008391 Solanum tuberosum PGSC0003DMG400008391 I
PGSC0003DMG400020608 Solanum tuberosum PGSC0003DMG400020608 I
PGSC0003DMG400027582 Solanum tuberosum PGSC0003DMG400027582 I
PGSC0003DMG400029207 Solanum tuberosum PGSC0003DMG400029207 I
POPTR_0006s10950 Populus trichocarpa POPTR_0006s10950 I
POPTR_0013s09470 Populus trichocarpa POPTR_0013s09470 I
POPTR_0016s14490 Populus trichocarpa POPTR_0016s14490 I
PRUPE_ppa020736mg Prunus persica PRUPE_ppa020736mg I
PRUPE_ppa025912mg Prunus persica PRUPE_ppa025912mg I
PRUPE_ppa026125mg Prunus persica PRUPE_ppa026125mg I
PRUPE_ppa026704mg Prunus persica PRUPE_ppa026704mg I
Sb02g022280 Sorghum bicolor Sb02g022280 I
Sb02g022290 Sorghum bicolor Sb02g022290 I
Sb06g013835 Sorghum bicolor Sb06g013835 I
Sb07g019400 Sorghum bicolor Sb07g019400 I
Sb08g005080 Sorghum bicolor Sb08g005080 I
Si015433m.g Setaria italica Si015433m.g I
Si022702m.g Setaria italica Si022702m.g I
Si030531m.g Setaria italica Si030531m.g I
Solyc03g095770.2 Solanum lycopersicum Solyc03g095770.2 I
Solyc09g015770.2 Solanum lycopersicum Solyc09g015770.2 I
TCM_019689 Theobroma cacao TCM_019689 I
TCM_045556 Theobroma cacao TCM_045556 I
Traes_2AS_6269D889E Triticum aestivum Traes_2AS_6269D889E I
Traes_2BS_B65714572 Triticum aestivum Traes_2BS_B65714572 I
Traes_7DL_A9EF00572 Triticum aestivum Traes_7DL_A9EF00572 I
TRIUR3_04352 Triticum urartu TRIUR3_04352 I
WRKY55 Vitis vinifera VIT_13s0067g03130 I
VIT_13s0067g03140 Vitis vinifera VIT_13s0067g03140 I
Ca_04100 Cicer arietinum Ca_04100 I
Ca_09495 Cicer arietinum Ca_09495 I
Cla007424 Citrullus lanatus Cla007424 I
Cla018337 Citrullus lanatus Cla018337 I
Pm003013 Prunus mume Pm003013 I
Pm003014 Prunus mume Pm003014 I
Pm003015 Prunus mume Pm003015 I
Pm019286 Prunus mume Pm019286 I
29729.m002369 Ricinus communis 29729.m002369 I
29915.m000479 Ricinus communis 29915.m000479 I
cassava23183.valid.m1 Manihot esculenta cassava23183.valid.m1 I
cassava25180.valid.m1 Manihot esculenta cassava25180.valid.m1 I
cassava36286.valid.m1 Manihot esculenta cassava36286.valid.m1 I
cassava43790.valid.m1 Manihot esculenta cassava43790.valid.m1 I
cassava7524.valid.m1 Manihot esculenta cassava7524.valid.m1 I
cassava7525.valid.m1 Manihot esculenta cassava7525.valid.m1 I
Cucsa.177060 Cucumis sativus Cucsa.177060 I
mgf002542m Mimulus guttatus mgf002542m I
mgf009193m Mimulus guttatus mgf009193m I
Aquca_027_00037 Aquilegia coerulea Aquca_027_00037 I
Bostr.20505s0112 Boechera stricta Bostr.20505s0112 I
Cagra.0925s0056 Capsella grandiflora Cagra.0925s0056 I
Cagra.1642s0039 Capsella grandiflora Cagra.1642s0039 I
Carubv10017349m.g Capsella rubella Carubv10017349m.g I
Carubv10024972m.g Capsella rubella Carubv10024972m.g I
Ciclev10012055m.g Citrus clementina Ciclev10012055m.g I
Ciclev10032192m.g Citrus clementina Ciclev10032192m.g I
Ciclev10033384m.g Citrus clementina Ciclev10033384m.g I
Eucgr.G03145 Eucalyptus grandis Eucgr.G03145 I
Eucgr.J00106 Eucalyptus grandis Eucgr.J00106 I
Eucgr.K01289 Eucalyptus grandis Eucgr.K01289 I
evm.TU.supercontig_19.44 Carica papaya evm.TU.supercontig_19.44 I
evm.TU.supercontig_86.64 Carica papaya evm.TU.supercontig_86.64 I
evm.TU.supercontig_86.65 Carica papaya evm.TU.supercontig_86.65 I
gene13546-v1.0-hybrid Fragaria vesca gene13546-v1.0-hybrid I
gene13547-v1.0-hybrid Fragaria vesca gene13547-v1.0-hybrid I
gene13549-v1.0-hybrid Fragaria vesca gene13549-v1.0-hybrid I
gene13554-v1.0-hybrid Fragaria vesca gene13554-v1.0-hybrid I
gene21365-v1.0-hybrid Fragaria vesca gene21365-v1.0-hybrid I
Gorai.005G003900 Gossypium raimondii Gorai.005G003900 I
Gorai.010G219200 Gossypium raimondii Gorai.010G219200 I
Gorai.012G013900 Gossypium raimondii Gorai.012G013900 I
Gorai.012G014000 Gossypium raimondii Gorai.012G014000 I
Gorai.013G008300 Gossypium raimondii Gorai.013G008300 I
Lus10012870.g Linum usitatissimum Lus10012870.g I
Lus10029021.g Linum usitatissimum Lus10029021.g I
Lus10030517.g Linum usitatissimum Lus10030517.g I
Lus10034244.g Linum usitatissimum Lus10034244.g I
MDP0000175240 Malus domestica MDP0000175240 I
MDP0000578301 Malus domestica MDP0000578301 I
MDP0000754989 Malus domestica MDP0000754989 I
MDP0000828055 Malus domestica MDP0000828055 I
orange1.1g018407m.g Citrus sinensis orange1.1g018407m.g I
orange1.1g020291m.g Citrus sinensis orange1.1g020291m.g I
orange1.1g021598m.g Citrus sinensis orange1.1g021598m.g I
Pavir.Ba02544 Panicum virgatum Pavir.Ba02544 I
Pavir.Ba02545 Panicum virgatum Pavir.Ba02545 I
Pavir.Bb02088 Panicum virgatum Pavir.Bb02088 I
Pavir.Ca02012 Panicum virgatum Pavir.Ca02012 I
Pavir.Cb01173 Panicum virgatum Pavir.Cb01173 I
Pavir.Fa01520 Panicum virgatum Pavir.Fa01520 I
Pavir.J37854 Panicum virgatum Pavir.J37854 I
SapurV1A.0065s0580 Salix purpurea SapurV1A.0065s0580 I
SapurV1A.0356s0010 Salix purpurea SapurV1A.0356s0010 I
SapurV1A.0914s0120 Salix purpurea SapurV1A.0914s0120 I
Thhalv10006146m.g Eutrema salsugineum Thhalv10006146m.g I
PK03324.1 Cannabis sativa PK03324.1 I
PK10616.1 Cannabis sativa PK10616.1 I
PK21378.1 Cannabis sativa PK21378.1 I
chr1.CM0320.400.nd Lotus japonicus chr1.CM0320.400.nd I
PDK_20s1440981g001 Phoenix dactylifera PDK_20s1440981g001 I
PDK_20s1571901g001 Phoenix dactylifera PDK_20s1571901g001 I