ISCW001129 (Ixodes scapularis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ISCW001129 T318647_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.679 0.492
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.679 0.492
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.679 0.492
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.679 0.492
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.666 0.410
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.666 0.410
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.666 0.410
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.666 0.410
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.666 0.410
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.666 0.410
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.666 0.410
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.666 0.410
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.666 0.410
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.666 0.410
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.666 0.410
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.666 0.410
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.666 0.410
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.666 0.410
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.666 0.410
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ISCW001129-PA RFX 104 164

Links

Other RFX family TFs
Other Ixodes scapularis TFs

217 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA013729 Oryza indica BGIOSGA013729 I
BGIOSGA025266 Oryza indica BGIOSGA025266 I
BRADI1G05430 Brachypodium distachyon BRADI1G05430 I
BRADI1G55427 Brachypodium distachyon BRADI1G55427 I
BRADI3G54070 Brachypodium distachyon BRADI3G54070 I
F775_30957 Aegilops tauschii F775_30957 I
GRMZM2G004356 Zea mays GRMZM2G004356 I
GRMZM2G162382 Zea mays GRMZM2G162382 I
GSMUA_Achr4G21070_001 Musa acuminata GSMUA_Achr4G21070_001 I
GSMUA_Achr5G03100_001 Musa acuminata GSMUA_Achr5G03100_001 I
GSMUA_Achr9G25560_001 Musa acuminata GSMUA_Achr9G25560_001 I
LPERR01G07000 Leersia perrieri LPERR01G07000 I
LPERR03G31640 Leersia perrieri LPERR03G31640 I
LPERR07G04600 Leersia perrieri LPERR07G04600 I
OB07G13990 Oryza brachyantha OB07G13990 I
OBART03G37400 Oryza barthii OBART03G37400 I
OBART07G05280 Oryza barthii OBART07G05280 I
OGLUM03G37150 Oryza glumaepatula OGLUM03G37150 I
OGLUM07G04790 Oryza glumaepatula OGLUM07G04790 I
OLONG_014165 Oryza longistaminata OLONG_014165 I
OMERI03G34570 Oryza meridionalis OMERI03G34570 I
OMERI05G15760 Oryza meridionalis OMERI05G15760 I
OMERI06G24090 Oryza meridionalis OMERI06G24090 I
ONIVA03G38760 Oryza nivara ONIVA03G38760 I
ONIVA07G04020 Oryza nivara ONIVA07G04020 I
OPUNC03G34510 Oryza punctata OPUNC03G34510 I
OPUNC07G05040 Oryza punctata OPUNC07G05040 I
OPUNC09G11520 Oryza punctata OPUNC09G11520 I
ORGLA06G0244900 Oryza glaberrima ORGLA06G0244900 I
ORGLA07G0044500 Oryza glaberrima ORGLA07G0044500 I
ORUFI07G05060 Oryza rufipogon ORUFI07G05060 I
OS03G0797600 Oryza sativa OS03G0797600 I
Sb01g005130 Sorghum bicolor Sb01g005130 I
Sb02g004570 Sorghum bicolor Sb02g004570 I
Si030704m.g Setaria italica Si030704m.g I
Si036929m.g Setaria italica Si036929m.g I
Traes_5BL_DB5410008 Triticum aestivum Traes_5BL_DB5410008 I
Traes_5DL_1CD573458 Triticum aestivum Traes_5DL_1CD573458 I
Traes_6BL_AEB13ECDE Triticum aestivum Traes_6BL_AEB13ECDE I
Pavir.Ba03672 Panicum virgatum Pavir.Ba03672 I
Pavir.J00283 Panicum virgatum Pavir.J00283 I
Pavir.J03221 Panicum virgatum Pavir.J03221 I
Pavir.J04249 Panicum virgatum Pavir.J04249 I
AT1G03040 Arabidopsis thaliana AT1G03040 N
UNE12 Arabidopsis thaliana AT4G02590 N
BGIOSGA030928 Oryza indica BGIOSGA030928 N
Bo01031s030 Brassica oleracea Bo01031s030 N
Bo2g100750 Brassica oleracea Bo2g100750 N
Bo5g003580 Brassica oleracea Bo5g003580 N
Bo9g005930 Brassica oleracea Bo9g005930 N
Bra000872 Brassica rapa Bra000872 N
Bra018539 Brassica rapa Bra018539 N
Bra033368 Brassica rapa Bra033368 N
Bra036256 Brassica rapa Bra036256 N
fgenesh2_kg.1__235__AT1G03040.1 Arabidopsis lyrata fgenesh2_kg.1__235__AT1G03040.1 N
UNE12 Arabidopsis lyrata fgenesh2_kg.6__3435__AT4G02590.2 N
GLYMA02G16110 Glycine max GLYMA02G16110 N
GLYMA03G31510 Glycine max GLYMA03G31510 N
GLYMA10G03690 Glycine max GLYMA10G03690 N
GLYMA10G30430 Glycine max GLYMA10G30430 N
GLYMA19G34360 Glycine max GLYMA19G34360 N
GLYMA20G36770 Glycine max GLYMA20G36770 N
MTR_1g070870 Medicago truncatula MTR_1g070870 N
MTR_1g080890 Medicago truncatula MTR_1g080890 N
PGSC0003DMG400006089 Solanum tuberosum PGSC0003DMG400006089 N
PGSC0003DMG400013393 Solanum tuberosum PGSC0003DMG400013393 N
PGSC0003DMG400019334 Solanum tuberosum PGSC0003DMG400019334 N
POPTR_0002s04620 Populus trichocarpa POPTR_0002s04620 N
POPTR_0005s05500 Populus trichocarpa POPTR_0005s05500 N
POPTR_0005s23930 Populus trichocarpa POPTR_0005s23930 N
PRUPE_ppa008172mg Prunus persica PRUPE_ppa008172mg N
PRUPE_ppa009299mg Prunus persica PRUPE_ppa009299mg N
Solyc03g005350.2 Solanum lycopersicum Solyc03g005350.2 N
Solyc09g065820.2 Solanum lycopersicum Solyc09g065820.2 N
Solyc09g083220.2 Solanum lycopersicum Solyc09g083220.2 N
TCM_004217 Theobroma cacao TCM_004217 N
TCM_026346 Theobroma cacao TCM_026346 N
VIT_05s0020g04620 Vitis vinifera VIT_05s0020g04620 N
VIT_07s0141g00220 Vitis vinifera VIT_07s0141g00220 N
VIT_14s0030g02230 Vitis vinifera VIT_14s0030g02230 N
Ca_03755 Cicer arietinum Ca_03755 N
Ca_07790 Cicer arietinum Ca_07790 N
Ca_12194 Cicer arietinum Ca_12194 N
Cla015040 Citrullus lanatus Cla015040 N
Pm003525 Prunus mume Pm003525 N
Pm020229 Prunus mume Pm020229 N
29598.m000464 Ricinus communis 29598.m000464 N
29883.m001988 Ricinus communis 29883.m001988 N
cassava18573.valid.m1 Manihot esculenta cassava18573.valid.m1 N
cassava22704.valid.m1 Manihot esculenta cassava22704.valid.m1 N
cassava36725.valid.m1 Manihot esculenta cassava36725.valid.m1 N
Cucsa.289090 Cucumis sativus Cucsa.289090 N
Cucsa.388780 Cucumis sativus Cucsa.388780 N
mgf001465m Mimulus guttatus mgf001465m N
Aquca_017_00590 Aquilegia coerulea Aquca_017_00590 N
Bostr.2983s0202 Boechera stricta Bostr.2983s0202 N
Cagra.0635s0023 Capsella grandiflora Cagra.0635s0023 N
Cagra.0897s0074 Capsella grandiflora Cagra.0897s0074 N
Carubv10001523m.g Capsella rubella Carubv10001523m.g N
Carubv10009831m.g Capsella rubella Carubv10009831m.g N
Ciclev10001768m.g Citrus clementina Ciclev10001768m.g N
Ciclev10021443m.g Citrus clementina Ciclev10021443m.g N
Eucgr.B01487 Eucalyptus grandis Eucgr.B01487 N
Eucgr.H04337 Eucalyptus grandis Eucgr.H04337 N
evm.TU.supercontig_117.94 Carica papaya evm.TU.supercontig_117.94 N
evm.TU.supercontig_52.97 Carica papaya evm.TU.supercontig_52.97 N
gene08188-v1.0-hybrid Fragaria vesca gene08188-v1.0-hybrid N
gene16564-v1.0-hybrid Fragaria vesca gene16564-v1.0-hybrid N
Gorai.001G242500 Gossypium raimondii Gorai.001G242500 N
Gorai.004G075200 Gossypium raimondii Gorai.004G075200 N
Gorai.004G218900 Gossypium raimondii Gorai.004G218900 N
Gorai.007G141800 Gossypium raimondii Gorai.007G141800 N
Gorai.007G277200 Gossypium raimondii Gorai.007G277200 N
Lus10002720.g Linum usitatissimum Lus10002720.g N
Lus10006587.g Linum usitatissimum Lus10006587.g N
Lus10014726.g Linum usitatissimum Lus10014726.g N
Lus10015909.g Linum usitatissimum Lus10015909.g N
Lus10018761.g Linum usitatissimum Lus10018761.g N
Lus10024850.g Linum usitatissimum Lus10024850.g N
MDP0000176749 Malus domestica MDP0000176749 N
MDP0000295593 Malus domestica MDP0000295593 N
orange1.1g022649m.g Citrus sinensis orange1.1g022649m.g N
Pavir.Fa00651 Panicum virgatum Pavir.Fa00651 N
Pavir.J25149 Panicum virgatum Pavir.J25149 N
SapurV1A.0006s1290 Salix purpurea SapurV1A.0006s1290 N
SapurV1A.0729s0150 Salix purpurea SapurV1A.0729s0150 N
SapurV1A.0860s0050 Salix purpurea SapurV1A.0860s0050 N
Thhalv10008279m.g Eutrema salsugineum Thhalv10008279m.g N
Thhalv10028824m.g Eutrema salsugineum Thhalv10028824m.g N
PK20184.1 Cannabis sativa PK20184.1 N
PK25419.1 Cannabis sativa PK25419.1 N
chr1.CM0375.380.nc Lotus japonicus chr1.CM0375.380.nc N
chr5.LjT29J15.30.nc Lotus japonicus chr5.LjT29J15.30.nc N