runx2 (Xenopus tropicalis)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 XB-GENE-482021 T319705_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.962 0.962
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.962 0.962
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.962 0.962
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.962 0.962
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.962 0.962
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.962 0.962
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.962 0.962
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.962 0.962
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.962 0.962
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.962 0.962
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.962 0.962
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.962 0.962
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.908 0.908
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.908 0.908
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.908 0.908
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.908 0.908
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.908 0.908
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.908 0.908
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.908 0.908
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.908 0.908
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.908 0.908
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.908 0.908
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.908 0.908
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.908 0.908
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.885 0.885
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.885 0.885
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.885 0.885
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.885 0.885
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.885 0.885
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.885 0.885
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.885 0.885
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.885 0.885
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.885 0.885
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.885 0.885
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.885 0.885
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.885 0.885
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.700 0.700
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.700 0.700
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.700 0.700
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BAG69611 Runt 76 205

Links

Other Runt family TFs
Other Xenopus tropicalis TFs

272 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARNTL Homo sapiens ENSG00000133794 D
Arntl Rattus norvegicus ENSRNOG00000014448 D
Arntl Mus musculus ENSMUSG00000055116 D
ENSSTOG00000022144 Ictidomys tridecemlineatus ENSSTOG00000022144 I
ARNTL Vicugna pacos ENSVPAG00000005926 I
ARNTL Tursiops truncatus ENSTTRG00000013925 I
ENSTSYG00000000577 Tarsius syrichta ENSTSYG00000000577 I
arntl1a Takifugu rubripes ENSTRUG00000008391 I
arntl2 Takifugu rubripes ENSTRUG00000007832 I
arntl2 Tetraodon nigroviridis ENSTNIG00000012142 I
arntl1a Tetraodon nigroviridis ENSTNIG00000005490 I
ENSTGUG00000015954 Taeniopygia guttata ENSTGUG00000015954 I
ENSTGUG00000014839 Taeniopygia guttata ENSTGUG00000014839 I
ARNTL Tupaia belangeri ENSTBEG00000017387 I
ENSXMAG00000001482 Xiphophorus maculatus ENSXMAG00000001482 I
ARNTL Sus scrofa ENSSSCG00000013397 I
ENSSHAG00000017357 Sarcophilus harrisii ENSSHAG00000017357 I
ARNTL Pteropus vampyrus ENSPVAG00000006712 I
ARNTL Pan troglodytes ENSPTRG00000003376 I
ENSPSIG00000013131 Pelodiscus sinensis ENSPSIG00000013131 I
ENSPPYG00000003473 Pongo abelii ENSPPYG00000003473 I
ENSPMAG00000004171 Petromyzon marinus ENSPMAG00000004171 I
ENSPFOG00000016287 Poecilia formosa ENSPFOG00000016287 I
ENSPFOG00000008027 Poecilia formosa ENSPFOG00000008027 I
Gfo_R013617 Geospiza fortis Gfo_R013617 I
arntl.S Xenopus laevis XB-GENE-495459 I
arntl Xenopus tropicalis XB-GENE-495455 I
arntl.L Xenopus laevis XB-GENE-17342306 I
Ocbimv22023737m.g Octopus bimaculoides Ocbimv22023737m.g I
fgenesh2_pg.scaffold_792000016 Branchiostoma floridae fgenesh2_pg.scaffold_792000016 I
fgenesh2_pg.scaffold_279000045 Branchiostoma floridae fgenesh2_pg.scaffold_279000045 I
Tal_R003521 Tyto alba Tal_R003521 I
Pvit_10294 Pogona vitticeps Pvit_10294 I
Ogr18318 Ophisaurus gracilis Ogr18318 I
Myotis_brandtii_Arntl_10004678 Myotis brandtii Myotis_brandtii_Arntl_10004678 I
arntl2 Oryzias latipes ENSORLG00000010946 I
ENSP00000384517 Macaca fascicularis ENSP00000384517 I
ENSBTAP00000017323-D1 Bos grunniens ENSBTAP00000017323-D1 I
Cmyd_10009262 Chelonia mydas Cmyd_10009262 I
Brh_R010633 Buceros rhinoceros Brh_R010633 I
Alligator_sinensis_CCG000787.1 Alligator sinensis Alligator_sinensis_CCG000787.1 I
Afo_R014608 Aptenodytes forsteri Afo_R014608 I
Aan_R006598 Calypte anna Aan_R006598 I
NEMVEDRAFT_v1g224692 Nematostella vectensis NEMVEDRAFT_v1g224692 I
NEMVEDRAFT_v1g132249 Nematostella vectensis NEMVEDRAFT_v1g132249 I
ENSXMAG00000015619 Xiphophorus maculatus ENSXMAG00000015619 I
ARNTL Cavia porcellus ENSCPOG00000008795 I
arntl1a Gasterosteus aculeatus ENSGACG00000002445 I
ARNTL Felis catus ENSFCAG00000010983 I
ENSFALG00000010646 Ficedula albicollis ENSFALG00000010646 I
ARNTL Equus caballus ENSECAG00000012118 I
Arntl Dipodomys ordii ENSDORG00000015539 I
ARNTL Dasypus novemcinctus ENSDNOG00000003841 I
arntl2 Danio rerio ENSDARG00000041381 I
arntl1b Danio rerio ENSDARG00000035732 I
arntl1a Danio rerio ENSDARG00000006791 I
ENSCSAG00000004681 Chlorocebus sabaeus ENSCSAG00000004681 I
ARNTL Gallus gallus ENSGALG00000005378 I
ARNTL Callithrix jacchus ENSCJAG00000010162 I
ARNTL Choloepus hoffmanni ENSCHOG00000000376 I
ARNTL Canis familiaris ENSCAFG00000008095 I
ARNTL Bos taurus ENSBTAG00000013029 I
ENSAPLG00000003885 Anas platyrhynchos ENSAPLG00000003885 I
ENSAMXG00000020233 Astyanax mexicanus ENSAMXG00000020233 I
ENSAMXG00000011758 Astyanax mexicanus ENSAMXG00000011758 I
ENSAMXG00000010089 Astyanax mexicanus ENSAMXG00000010089 I
ENSAMEG00000002309 Ailuropoda melanoleuca ENSAMEG00000002309 I
ARNTL Anolis carolinensis ENSACAG00000004497 I
ARNTL Monodelphis domestica ENSMODG00000008708 I
CGI_10025278 Crassostrea gigas CGI_10025278 I
ARNTL Ochotona princeps ENSOPRG00000004853 I
ENSONIG00000014665 Oreochromis niloticus ENSONIG00000014665 I
ENSONIG00000010970 Oreochromis niloticus ENSONIG00000010970 I
ARNTL Otolemur garnettii ENSOGAG00000000736 I
ARNTL Oryctolagus cuniculus ENSOCUG00000005940 I
ENSOARG00000007809 Ovis aries ENSOARG00000007809 I
ENSOANG00000000503 Ornithorhynchus anatinus ENSOANG00000000503 I
ENSNLEG00000017674 Nomascus leucogenys ENSNLEG00000017674 I
ENSMPUG00000013135 Mustela putorius furo ENSMPUG00000013135 I
arntl1a Oryzias latipes ENSORLG00000019370 I
ARNTL Macaca mulatta ENSMMUG00000009690 I
ARNTL Myotis lucifugus ENSMLUG00000008503 I
ENSMICG00000001229 Microcebus murinus ENSMICG00000001229 I
ARNTL Meleagris gallopavo ENSMGAG00000005349 I
ENSLOCG00000003999 Lepisosteus oculatus ENSLOCG00000003999 I
ARNTL Loxodonta africana ENSLAFG00000026673 I
ENSLACG00000004629 Latimeria chalumnae ENSLACG00000004629 I
ENSGMOG00000008906 Gadus morhua ENSGMOG00000008906 I
ARNTL Gorilla gorilla ENSGGOG00000013211 I