OMERI11G08010 (Oryza meridionalis)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 OMERI11G08010 T320605_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.703 0.703
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.878 0.878
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI11G08010.10 RWP-RK 224 260
OMERI11G08010.11 RWP-RK 641 689
OMERI11G08010.1 RWP-RK 563 599
OMERI11G08010.2 RWP-RK 596 644
OMERI11G08010.3 RWP-RK 703 751
OMERI11G08010.5 RWP-RK 641 689
OMERI11G08010.6 RWP-RK 531 579
OMERI11G08010.7 RWP-RK 581 629
OMERI11G08010.8 RWP-RK 534 582
OMERI11G08010.9 RWP-RK 638 686

Links

Other RWP-RK family TFs
Other Oryza meridionalis TFs

422 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla007091 Citrullus lanatus Cla007091 N
Sb0010s016080 Sorghum bicolor Sb0010s016080 N
Sb01g039810 Sorghum bicolor Sb01g039810 N
Si026193m.g Setaria italica Si026193m.g N
Si035112m.g Setaria italica Si035112m.g N
Solyc01g081490.2 Solanum lycopersicum Solyc01g081490.2 N
TCM_025741 Theobroma cacao TCM_025741 N
Traes_4AL_26117D669 Triticum aestivum Traes_4AL_26117D669 N
Traes_4AS_26117D669 Triticum aestivum Traes_4AS_26117D669 N
Traes_4AS_DE644E0CF Triticum aestivum Traes_4AS_DE644E0CF N
Traes_4BL_9CB9E3F96 Triticum aestivum Traes_4BL_9CB9E3F96 N
Traes_4DL_65B3128BF Triticum aestivum Traes_4DL_65B3128BF N
Traes_4DL_B8D22E4C2 Triticum aestivum Traes_4DL_B8D22E4C2 N
TRIUR3_30646 Triticum urartu TRIUR3_30646 N
POPTR_0013s06770 Populus trichocarpa POPTR_0013s06770 N
30148.m001412 Ricinus communis 30148.m001412 N
Ciclev10030998m.g Citrus clementina Ciclev10030998m.g N
evm.TU.supercontig_73.29 Carica papaya evm.TU.supercontig_73.29 N
gene17946-v1.0-hybrid Fragaria vesca gene17946-v1.0-hybrid N
Gorai.007G347300 Gossypium raimondii Gorai.007G347300 N
orange1.1g007404m.g Citrus sinensis orange1.1g007404m.g N
Pavir.Hb00670 Panicum virgatum Pavir.Hb00670 N
Pavir.Ia03759 Panicum virgatum Pavir.Ia03759 N
Pavir.J05262 Panicum virgatum Pavir.J05262 N
Pavir.J38369 Panicum virgatum Pavir.J38369 N
PK16345.1 Cannabis sativa PK16345.1 N
chr1.CM0017.250.nc Lotus japonicus chr1.CM0017.250.nc N
OBART03G12110 Oryza barthii OBART03G12110 N
BRADI1G66830 Brachypodium distachyon BRADI1G66830 N
BRADI4G19540 Brachypodium distachyon BRADI4G19540 N
F775_14570 Aegilops tauschii F775_14570 N
F775_32094 Aegilops tauschii F775_32094 N
GRMZM2G003182 Zea mays GRMZM2G003182 N
GRMZM2G100086 Zea mays GRMZM2G100086 N
GRMZM2G143392 Zea mays GRMZM2G143392 N
GRMZM2G164084 Zea mays GRMZM2G164084 N
GSMUA_Achr7G04860_001 Musa acuminata GSMUA_Achr7G04860_001 N
LPERR11G10050 Leersia perrieri LPERR11G10050 N
MLOC_59299 Hordeum vulgare MLOC_59299 N
OB03G22220 Oryza brachyantha OB03G22220 N
OB11G19800 Oryza brachyantha OB11G19800 N
BGIOSGA012312 Oryza indica BGIOSGA012312 N
OGLUM11G12180 Oryza glumaepatula OGLUM11G12180 N
OLONG_007716 Oryza longistaminata OLONG_007716 N
OLONG_012202 Oryza longistaminata OLONG_012202 N
ONIVA03G13860 Oryza nivara ONIVA03G13860 N
OPUNC03G11670 Oryza punctata OPUNC03G11670 N
OPUNC11G10590 Oryza punctata OPUNC11G10590 N
ORGLA03G0116800 Oryza glaberrima ORGLA03G0116800 N
ORGLA11G0105900 Oryza glaberrima ORGLA11G0105900 N
ORUFI11G13080 Oryza rufipogon ORUFI11G13080 N
OS03G0271100 Oryza sativa OS03G0271100 N
OS11G0448400 Oryza sativa OS11G0448400 N
PGSC0003DMG400031111 Solanum tuberosum PGSC0003DMG400031111 N