Lus10035008.g (Linum usitatissimum)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Lus10035008.g T321185_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.735 0.735
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.735 0.735
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10035008 RWP-RK 166 214

Links

Other RWP-RK family TFs
Other Linum usitatissimum TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RKD2 Arabidopsis thaliana AT1G74480 D 0.735
Si008273m.g Setaria italica Si008273m.g I 0.735
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.735
TCM_014009 Theobroma cacao TCM_014009 I 0.714
Traes_7DS_405F08A53 Triticum aestivum Traes_7DS_405F08A53 I 0.714
TRIUR3_19503 Triticum urartu TRIUR3_19503 I 0.755
Cla019404 Citrullus lanatus Cla019404 I 0.714
Pm024905 Prunus mume Pm024905 I 0.735
30138.m004071 Ricinus communis 30138.m004071 I 0.714
cassava35166.m1 Manihot esculenta cassava35166.m1 I 0.714
mg020279m Mimulus guttatus mg020279m I 0.735
mgf022310m Mimulus guttatus mgf022310m I 0.755
Bostr.3288s0094 Boechera stricta Bostr.3288s0094 I 0.714
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I 0.735
Carubv10021541m.g Capsella rubella Carubv10021541m.g I 0.735
gene26015-v1.0-hybrid Fragaria vesca gene26015-v1.0-hybrid I 0.755
Gorai.008G193400 Gossypium raimondii Gorai.008G193400 I 0.714
Lus10019100.g Linum usitatissimum Lus10019100.g I 0.755
Lus10034456.g Linum usitatissimum Lus10034456.g I 0.776
MDP0000261199 Malus domestica MDP0000261199 I 0.714
MDP0000266172 Malus domestica MDP0000266172 I 0.755
Pavir.Aa00708 Panicum virgatum Pavir.Aa00708 I 0.714
Pavir.Ab02992 Panicum virgatum Pavir.Ab02992 I 0.735
Pavir.Da01160 Panicum virgatum Pavir.Da01160 I 0.735
Pavir.J13146 Panicum virgatum Pavir.J13146 I 0.735
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I 0.714
RKD1 Arabidopsis thaliana AT1G18790 I 0.735
PRUPE_ppa023107mg Prunus persica PRUPE_ppa023107mg I 0.735
GRMZM2G392306 Zea mays GRMZM2G392306 I 0.776
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I 0.735
LPERR06G07570 Leersia perrieri LPERR06G07570 I 0.714
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.784
MLOC_59560 Hordeum vulgare MLOC_59560 I 0.755
OB06G17750 Oryza brachyantha OB06G17750 I 0.735
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I 0.755
F775_07483 Aegilops tauschii F775_07483 I 0.714
OMERI06G09770 Oryza meridionalis OMERI06G09770 I 0.735
ONIVA06G09450 Oryza nivara ONIVA06G09450 I 0.735
BGIOSGA022580 Oryza indica BGIOSGA022580 I 0.735
OPUNC06G07940 Oryza punctata OPUNC06G07940 I 0.735
ORGLA06G0077700 Oryza glaberrima ORGLA06G0077700 I 0.735
Sb10g008120 Sorghum bicolor Sb10g008120 I 0.735
ORUFI06G08510 Oryza rufipogon ORUFI06G08510 I 0.735
OS06G0228950 Oryza sativa OS06G0228950 I 0.735
F775_03178 Aegilops tauschii F775_03178 N 0.714
BGIOSGA001434 Oryza indica BGIOSGA001434 N 0.735
LPERR01G16660 Leersia perrieri LPERR01G16660 N 0.735
OBART01G19230 Oryza barthii OBART01G19230 N 0.735
OGLUM01G22860 Oryza glumaepatula OGLUM01G22860 N 0.714
ONIVA01G21910 Oryza nivara ONIVA01G21910 N 0.735
OPUNC01G19590 Oryza punctata OPUNC01G19590 N 0.735
ORUFI01G21630 Oryza rufipogon ORUFI01G21630 N 0.735