AMTR_s00011p00266100 (Amborella trichopoda)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 AMTR_s00011p00266100 T323750_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ERM94804 Sigma 70 258 328

Links

Other Sigma 70 family TFs
Other Amborella trichopoda TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava13702.valid.m1 Manihot esculenta cassava13702.valid.m1 N 0.901
Carubv10020145m.g Capsella rubella Carubv10020145m.g N 0.873
Cagra.2194s0001 Capsella grandiflora Cagra.2194s0001 N 0.873
Bostr.10180s0008 Boechera stricta Bostr.10180s0008 N 0.887
Aquca_052_00048 Aquilegia coerulea Aquca_052_00048 N 0.915
mgf016433m Mimulus guttatus mgf016433m N 0.915
mgf015154m Mimulus guttatus mgf015154m N 0.775
mgf004750m Mimulus guttatus mgf004750m N 0.915
Cucsa.073340 Cucumis sativus Cucsa.073340 N 0.930
cassava41980.valid.m1 Manihot esculenta cassava41980.valid.m1 N 0.915
Ciclev10031289m.g Citrus clementina Ciclev10031289m.g N 0.915
cassava13701.valid.m1 Manihot esculenta cassava13701.valid.m1 N 0.901
30148.m001468 Ricinus communis 30148.m001468 N 0.915
Pm019567 Prunus mume Pm019567 N 0.944
Cla006897 Citrullus lanatus Cla006897 N 0.930
Ca_22625 Cicer arietinum Ca_22625 N 0.915
Ca_22622 Cicer arietinum Ca_22622 N 0.901
SIGA Vitis vinifera VIT_16s0039g00660 N 0.930
TRIUR3_34525 Triticum urartu TRIUR3_34525 N 0.803
orange1.1g010521m.g Citrus sinensis orange1.1g010521m.g N 0.901
PDK_20s1319221g002 Phoenix dactylifera PDK_20s1319221g002 N 0.930
chr3.CM0127.660.nc Lotus japonicus chr3.CM0127.660.nc N 0.930
PK03826.1 Cannabis sativa PK03826.1 N 0.915
Thhalv10002486m.g Eutrema salsugineum Thhalv10002486m.g N 0.887
SapurV1A.1456s0040 Salix purpurea SapurV1A.1456s0040 N 0.915
SapurV1A.1326s0010 Salix purpurea SapurV1A.1326s0010 N 0.915
SapurV1A.0592s0030 Salix purpurea SapurV1A.0592s0030 N 0.915
Pavir.J39657 Panicum virgatum Pavir.J39657 N 0.845
Pavir.Fb00544 Panicum virgatum Pavir.Fb00544 N 0.831
Traes_7DL_21A260D0C Triticum aestivum Traes_7DL_21A260D0C N 0.803
MDP0000939377 Malus domestica MDP0000939377 N 0.944
MDP0000934360 Malus domestica MDP0000934360 N 0.944
Lus10020365.g Linum usitatissimum Lus10020365.g N 0.800
Gorai.007G247500 Gossypium raimondii Gorai.007G247500 N 0.915
Gorai.004G255000 Gossypium raimondii Gorai.004G255000 N 0.901
gene12547-v1.0-hybrid Fragaria vesca gene12547-v1.0-hybrid N 0.915
evm.TU.supercontig_3807.1 Carica papaya evm.TU.supercontig_3807.1 N 0.915
Eucgr.A02994 Eucalyptus grandis Eucgr.A02994 N 0.915
GRMZM2G360541 Zea mays GRMZM2G360541 N 0.703
OLONG_000145 Oryza longistaminata OLONG_000145 N 0.831
OGLUM08G04010 Oryza glumaepatula OGLUM08G04010 N 0.831
OBART08G03910 Oryza barthii OBART08G03910 N 0.831
OB08G14150 Oryza brachyantha OB08G14150 N 0.845
MTR_0172s0030 Medicago truncatula MTR_0172s0030 N 0.887
LPERR08G03850 Leersia perrieri LPERR08G03850 N 0.845
GSMUA_Achr1G10700_001 Musa acuminata GSMUA_Achr1G10700_001 N 0.873
GSMUA_Achr11G08010_001 Musa acuminata GSMUA_Achr11G08010_001 N 0.873
GRMZM2G543629 Zea mays GRMZM2G543629 N 0.803
OMERI08G04040 Oryza meridionalis OMERI08G04040 N 0.831
GRMZM2G006736 Zea mays GRMZM2G006736 N 0.817
GLYMA12G01600 Glycine max GLYMA12G01600 N 0.915
GLYMA09G35750 Glycine max GLYMA09G35750 N 0.915
F775_32229 Aegilops tauschii F775_32229 N 0.803
BRADI3G16040 Brachypodium distachyon BRADI3G16040 N 0.789
Bra008513 Brassica rapa Bra008513 N 0.887
Bo2g097550 Brassica oleracea Bo2g097550 N 0.887
BGIOSGA028041 Oryza indica BGIOSGA028041 N 0.831
POPTR_0019s06020 Populus trichocarpa POPTR_0019s06020 N 0.930
Traes_7BL_0D553E505 Triticum aestivum Traes_7BL_0D553E505 N 0.818
Traes_7AL_33A778289 Triticum aestivum Traes_7AL_33A778289 N 0.803
TCM_025640 Theobroma cacao TCM_025640 N 0.915
Solyc06g072710.2 Solanum lycopersicum Solyc06g072710.2 N 0.887
Solyc03g097320.2 Solanum lycopersicum Solyc03g097320.2 N 0.873
Si013608m.g Setaria italica Si013608m.g N 0.845
SIGA Arabidopsis lyrata scaffold_200883.1 N 0.873
Sb07g004340 Sorghum bicolor Sb07g004340 N 0.817
PRUPE_ppa004393mg Prunus persica PRUPE_ppa004393mg N 0.944
SIGA Arabidopsis thaliana AT1G64860 N 0.873
POPTR_0013s07290 Populus trichocarpa POPTR_0013s07290 N 0.901
PGSC0003DMG400027038 Solanum tuberosum PGSC0003DMG400027038 N 0.887
PGSC0003DMG400026491 Solanum tuberosum PGSC0003DMG400026491 N 0.873
OS08G0163400 Oryza sativa OS08G0163400 N 0.831
ORUFI08G04310 Oryza rufipogon ORUFI08G04310 N 0.831
ORGLA08G0033200 Oryza glaberrima ORGLA08G0033200 N 0.831
OPUNC08G03810 Oryza punctata OPUNC08G03810 N 0.831
ONIVA08G03880 Oryza nivara ONIVA08G03880 N 0.831