AMTR_s00025p00248060 (Amborella trichopoda)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 AMTR_s00025p00248060 T323751_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ERN12687 Sigma 70 214 284

Links

Other Sigma 70 family TFs
Other Amborella trichopoda TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_014_00805 Aquilegia coerulea Aquca_014_00805 N 0.775
PDK_20s1385451g001 Phoenix dactylifera PDK_20s1385451g001 N 0.746
PK06863.1 Cannabis sativa PK06863.1 N 0.718
Thhalv10013654m.g Eutrema salsugineum Thhalv10013654m.g N 0.803
SapurV1A.4644s0020 Salix purpurea SapurV1A.4644s0020 N 0.746
SapurV1A.0027s0740 Salix purpurea SapurV1A.0027s0740 N 0.746
orange1.1g046578m.g Citrus sinensis orange1.1g046578m.g N 0.789
gene29494-v1.0-hybrid Fragaria vesca gene29494-v1.0-hybrid N 0.761
evm.TU.supercontig_125.39 Carica papaya evm.TU.supercontig_125.39 N 0.789
Ciclev10033747m.g Citrus clementina Ciclev10033747m.g N 0.775
Carubv10001054m.g Capsella rubella Carubv10001054m.g N 0.803
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N 0.803
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N 0.803
SIGD Arabidopsis thaliana AT5G13730 N 0.803
cassava43094.valid.m1 Manihot esculenta cassava43094.valid.m1 N 0.761
29864.m001444 Ricinus communis 29864.m001444 N 0.732
Pm016510 Prunus mume Pm016510 N 0.746
SIG4 Vitis vinifera VIT_13s0064g00190 N 0.789
PRUPE_ppa017025mg Prunus persica PRUPE_ppa017025mg N 0.746
SIG4 Populus trichocarpa POPTR_0009s06210 N 0.761
GSMUA_Achr4G18530_001 Musa acuminata GSMUA_Achr4G18530_001 N 0.732
Bra023430 Brassica rapa Bra023430 N 0.803
Bra008807 Brassica rapa Bra008807 N 0.803
Bo9g166510 Brassica oleracea Bo9g166510 N 0.803
Bo2g011520 Brassica oleracea Bo2g011520 N 0.803