BGIOSGA020460 (Oryza indica)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 BGIOSGA020460 T323763_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA020460-PA Sigma 70 267 338

Links

Other Sigma 70 family TFs
Other Oryza indica TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.10199s0021 Boechera stricta Bostr.10199s0021 N 0.710
Sb09g030110 Sorghum bicolor Sb09g030110 N 0.899
Si021904m.g Setaria italica Si021904m.g N 0.928
TCM_015349 Theobroma cacao TCM_015349 N 0.725
Traes_1AL_0C41C44B1 Triticum aestivum Traes_1AL_0C41C44B1 N 0.855
TRIUR3_33378 Triticum urartu TRIUR3_33378 N 0.855
SIGE Vitis vinifera VIT_16s0050g02520 N 0.725
Ca_03953 Cicer arietinum Ca_03953 N 0.725
Cla004302 Citrullus lanatus Cla004302 N 0.725
cassava7220.valid.m1 Manihot esculenta cassava7220.valid.m1 N 0.725
Cucsa.012950 Cucumis sativus Cucsa.012950 N 0.725
mgf001401m Mimulus guttatus mgf001401m N 0.754
mgf006107m Mimulus guttatus mgf006107m N 0.710
PRUPE_ppa004259mg Prunus persica PRUPE_ppa004259mg N 0.710
Cagra.8922s0001 Capsella grandiflora Cagra.8922s0001 N 0.710
Carubv10000608m.g Capsella rubella Carubv10000608m.g N 0.710
Ciclev10004760m.g Citrus clementina Ciclev10004760m.g N 0.710
evm.TU.supercontig_3.54 Carica papaya evm.TU.supercontig_3.54 N 0.710
gene13107-v1.0-hybrid Fragaria vesca gene13107-v1.0-hybrid N 0.710
Gorai.008G270500 Gossypium raimondii Gorai.008G270500 N 0.710
Lus10014934.g Linum usitatissimum Lus10014934.g N 0.725
MDP0000831937 Malus domestica MDP0000831937 N 0.710
orange1.1g010092m.g Citrus sinensis orange1.1g010092m.g N 0.710
Pavir.J13718 Panicum virgatum Pavir.J13718 N 0.928
Thhalv10004166m.g Eutrema salsugineum Thhalv10004166m.g N 0.710
LPERR05G23180 Leersia perrieri LPERR05G23180 N 0.957
Bo9g013770 Brassica oleracea Bo9g013770 N 0.710
Bra026466 Brassica rapa Bra026466 N 0.710
BRADI2G14790 Brachypodium distachyon BRADI2G14790 N 0.710
F775_08366 Aegilops tauschii F775_08366 N 0.855
SIGE Arabidopsis lyrata fgenesh2_kg.6__2403__AT5G24120.1 N 0.710
GLYMA04G41691 Glycine max GLYMA04G41691 N 0.710
GLYMA06G13100 Glycine max GLYMA06G13100 N 0.725
GLYMA13G08390 Glycine max GLYMA13G08390 N 0.739
GLYMA14G31370 Glycine max GLYMA14G31370 N 0.725
GRMZM2G077436 Zea mays GRMZM2G077436 N 0.841
GSMUA_Achr7G24590_001 Musa acuminata GSMUA_Achr7G24590_001 N 0.739
SIGE Arabidopsis thaliana AT5G24120 N 0.710
MLOC_61094 Hordeum vulgare MLOC_61094 N 0.855
OB05G35020 Oryza brachyantha OB05G35020 N 0.971
OBART05G27520 Oryza barthii OBART05G27520 N 1.000
OGLUM05G29030 Oryza glumaepatula OGLUM05G29030 N 1.000
OLONG_028119 Oryza longistaminata OLONG_028119 N 1.000
OMERI05G23510 Oryza meridionalis OMERI05G23510 N 1.000
ONIVA05G29570 Oryza nivara ONIVA05G29570 N 1.000
OPUNC05G25110 Oryza punctata OPUNC05G25110 N 1.000
ORGLA05G0239100 Oryza glaberrima ORGLA05G0239100 N 1.000
ORUFI05G29480 Oryza rufipogon ORUFI05G29480 N 1.000
POPTR_0012s01430 Populus trichocarpa POPTR_0012s01430 N 0.710