SMAR002604 (Strigamia maritima)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 SMAR002604 T332615_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.468 0.594
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMAR002604-PA Sox 121 191

Links

Other Sox family TFs
Other Strigamia maritima TFs

186 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RAP2-6 Arabidopsis thaliana AT1G43160 D
ABR1 Arabidopsis thaliana AT5G64750 D
AMTR_s00016p00092590 Amborella trichopoda AMTR_s00016p00092590 I
AMTR_s00017p00232330 Amborella trichopoda AMTR_s00017p00232330 I
ERF110 Arabidopsis thaliana AT5G50080 I
ERF114 Arabidopsis thaliana AT5G61890 I
BGIOSGA000428 Oryza indica BGIOSGA000428 I
BGIOSGA016313 Oryza indica BGIOSGA016313 I
BGIOSGA019928 Oryza indica BGIOSGA019928 I
BGIOSGA029071 Oryza indica BGIOSGA029071 I
BGIOSGA034432 Oryza indica BGIOSGA034432 I
BGIOSGA036561 Oryza indica BGIOSGA036561 I
Bo2g008570 Brassica oleracea Bo2g008570 I
Bo2g161710 Brassica oleracea Bo2g161710 I
Bo2g166380 Brassica oleracea Bo2g166380 I
Bo3g004290 Brassica oleracea Bo3g004290 I
Bo3g100930 Brassica oleracea Bo3g100930 I
Bo3g109240 Brassica oleracea Bo3g109240 I
Bo9g018330 Brassica oleracea Bo9g018330 I
Bo9g175390 Brassica oleracea Bo9g175390 I
Bra005932 Brassica rapa Bra005932 I
Bra009272 Brassica rapa Bra009272 I
Bra019622 Brassica rapa Bra019622 I
Bra024325 Brassica rapa Bra024325 I
Bra029302 Brassica rapa Bra029302 I
Bra031903 Brassica rapa Bra031903 I
Bra037794 Brassica rapa Bra037794 I
BRADI2G24170 Brachypodium distachyon BRADI2G24170 I
BRADI2G56140 Brachypodium distachyon BRADI2G56140 I
BRADI5G08380 Brachypodium distachyon BRADI5G08380 I
F775_31480 Aegilops tauschii F775_31480 I
fgenesh2_kg.6__690__AT5G07310.1 Arabidopsis lyrata fgenesh2_kg.6__690__AT5G07310.1 I
ABR1 Arabidopsis lyrata fgenesh2_kg.8__2506__AT5G64750.1 I
ERF110 Arabidopsis lyrata fgenesh2_kg.8__881__AT5G50080.1 I
GLYMA02G07310 Glycine max GLYMA02G07310 I
GLYMA02G08835 Glycine max GLYMA02G08835 I
GLYMA04G39510 Glycine max GLYMA04G39510 I
GLYMA05G32040 Glycine max GLYMA05G32040 I
GLYMA06G15341 Glycine max GLYMA06G15341 I
GLYMA06G17180 Glycine max GLYMA06G17180 I
GLYMA10G36760 Glycine max GLYMA10G36760 I
GLYMA16G05190 Glycine max GLYMA16G05190 I
GLYMA16G26320 Glycine max GLYMA16G26320 I
GLYMA16G27950 Glycine max GLYMA16G27950 I
GLYMA19G27790 Glycine max GLYMA19G27790 I
GLYMA20G30835 Glycine max GLYMA20G30835 I
GRMZM2G076896 Zea mays GRMZM2G076896 I
GRMZM2G087059 Zea mays GRMZM2G087059 I
GRMZM2G100727 Zea mays GRMZM2G100727 I
GRMZM2G149756 Zea mays GRMZM2G149756 I
GRMZM2G309731 Zea mays GRMZM2G309731 I
GRMZM2G425798 Zea mays GRMZM2G425798 I
GRMZM2G457562 Zea mays GRMZM2G457562 I
GRMZM2G544539 Zea mays GRMZM2G544539 I
GSMUA_Achr10G09560_001 Musa acuminata GSMUA_Achr10G09560_001 I
GSMUA_Achr10G12150_001 Musa acuminata GSMUA_Achr10G12150_001 I
GSMUA_Achr2G21430_001 Musa acuminata GSMUA_Achr2G21430_001 I
GSMUA_Achr6G02310_001 Musa acuminata GSMUA_Achr6G02310_001 I
GSMUA_Achr6G08140_001 Musa acuminata GSMUA_Achr6G08140_001 I
GSMUA_Achr6G18020_001 Musa acuminata GSMUA_Achr6G18020_001 I
GSMUA_Achr6G25680_001 Musa acuminata GSMUA_Achr6G25680_001 I
GSMUA_Achr8G08000_001 Musa acuminata GSMUA_Achr8G08000_001 I
LPERR01G33110 Leersia perrieri LPERR01G33110 I
LPERR04G07810 Leersia perrieri LPERR04G07810 I
LPERR05G14130 Leersia perrieri LPERR05G14130 I
LPERR12G03800 Leersia perrieri LPERR12G03800 I
MLOC_10878 Hordeum vulgare MLOC_10878 I
MLOC_68290 Hordeum vulgare MLOC_68290 I
MLOC_7891 Hordeum vulgare MLOC_7891 I
MTR_1g098460 Medicago truncatula MTR_1g098460 I
MTR_3g095190 Medicago truncatula MTR_3g095190 I
MTR_3g098580 Medicago truncatula MTR_3g098580 I
MTR_6g037610 Medicago truncatula MTR_6g037610 I
MTR_8g092460 Medicago truncatula MTR_8g092460 I
OB04G18180 Oryza brachyantha OB04G18180 I
OBART12G04120 Oryza barthii OBART12G04120 I
OGLUM01G42800 Oryza glumaepatula OGLUM01G42800 I
OGLUM04G10750 Oryza glumaepatula OGLUM04G10750 I
OGLUM11G04050 Oryza glumaepatula OGLUM11G04050 I
OGLUM12G04880 Oryza glumaepatula OGLUM12G04880 I
OMERI01G35460 Oryza meridionalis OMERI01G35460 I
OMERI08G16840 Oryza meridionalis OMERI08G16840 I
ONIVA01G43260 Oryza nivara ONIVA01G43260 I
ONIVA04G08960 Oryza nivara ONIVA04G08960 I
ONIVA05G18720 Oryza nivara ONIVA05G18720 I
ONIVA11G04340 Oryza nivara ONIVA11G04340 I
ONIVA12G03810 Oryza nivara ONIVA12G03810 I
OPUNC04G09060 Oryza punctata OPUNC04G09060 I
OPUNC05G15760 Oryza punctata OPUNC05G15760 I
OPUNC11G03940 Oryza punctata OPUNC11G03940 I
OPUNC12G04190 Oryza punctata OPUNC12G04190 I
ORGLA01G0324200 Oryza glaberrima ORGLA01G0324200 I
ORGLA02G0353700 Oryza glaberrima ORGLA02G0353700 I
ORGLA04G0080400 Oryza glaberrima ORGLA04G0080400 I
ORGLA05G0154400 Oryza glaberrima ORGLA05G0154400 I
ORGLA08G0225800 Oryza glaberrima ORGLA08G0225800 I
ORGLA11G0040400 Oryza glaberrima ORGLA11G0040400 I
ORUFI01G41960 Oryza rufipogon ORUFI01G41960 I
ORUFI04G12250 Oryza rufipogon ORUFI04G12250 I
ORUFI05G19030 Oryza rufipogon ORUFI05G19030 I
ORUFI11G04200 Oryza rufipogon ORUFI11G04200 I
ORUFI12G04720 Oryza rufipogon ORUFI12G04720 I
OS01G0868000 Oryza sativa OS01G0868000 I
OS04G0398000 Oryza sativa OS04G0398000 I
OS05G0437100 Oryza sativa OS05G0437100 I
OS11G0168500 Oryza sativa OS11G0168500 I
PGSC0003DMG400006369 Solanum tuberosum PGSC0003DMG400006369 I
PGSC0003DMG400014240 Solanum tuberosum PGSC0003DMG400014240 I
PGSC0003DMG400018803 Solanum tuberosum PGSC0003DMG400018803 I
PGSC0003DMG400019693 Solanum tuberosum PGSC0003DMG400019693 I
PGSC0003DMG400023593 Solanum tuberosum PGSC0003DMG400023593 I
POPTR_0002s06620 Populus trichocarpa POPTR_0002s06620 I
POPTR_0005s08940 Populus trichocarpa POPTR_0005s08940 I
POPTR_0005s21690 Populus trichocarpa POPTR_0005s21690 I
POPTR_0007s07090 Populus trichocarpa POPTR_0007s07090 I
POPTR_0012s11030 Populus trichocarpa POPTR_0012s11030 I
PRUPE_ppa006595mg Prunus persica PRUPE_ppa006595mg I
PRUPE_ppa008772mg Prunus persica PRUPE_ppa008772mg I
Sb05g004170 Sorghum bicolor Sb05g004170 I
Sb07g025843 Sorghum bicolor Sb07g025843 I
Sb08g004260 Sorghum bicolor Sb08g004260 I
scaffold_802838.1 Arabidopsis lyrata scaffold_802838.1 I
Si002010m.g Setaria italica Si002010m.g I
Si010289m.g Setaria italica Si010289m.g I
Si013986m.g Setaria italica Si013986m.g I
Si026709m.g Setaria italica Si026709m.g I
Solyc03g118190.2 Solanum lycopersicum Solyc03g118190.2 I
Solyc04g012050.2 Solanum lycopersicum Solyc04g012050.2 I
Solyc04g051360.2 Solanum lycopersicum Solyc04g051360.2 I
Solyc04g071770.2 Solanum lycopersicum Solyc04g071770.2 I
Solyc12g042210.1 Solanum lycopersicum Solyc12g042210.1 I
Solyc12g056590.1 Solanum lycopersicum Solyc12g056590.1 I
TCM_001301 Theobroma cacao TCM_001301 I
TCM_014762 Theobroma cacao TCM_014762 I
TCM_017352 Theobroma cacao TCM_017352 I
TCM_035671 Theobroma cacao TCM_035671 I
Traes_2AL_6B6086A7C Triticum aestivum Traes_2AL_6B6086A7C I
Traes_2BL_E5F50498D Triticum aestivum Traes_2BL_E5F50498D I
Traes_2DL_2536A1C8C Triticum aestivum Traes_2DL_2536A1C8C I
Traes_5BL_60FC12DA6 Triticum aestivum Traes_5BL_60FC12DA6 I
Traes_5BS_80C46D9C4 Triticum aestivum Traes_5BS_80C46D9C4 I
VIT_01s0150g00120 Vitis vinifera VIT_01s0150g00120 I
ABR1 Vitis vinifera VIT_07s0031g01980 I
VIT_14s0068g01040 Vitis vinifera VIT_14s0068g01040 I
Rap2.6L Vitis vinifera VIT_17s0000g00200 I
ERF110 Vitis vinifera VIT_18s0072g00260 I
Ca_01387 Cicer arietinum Ca_01387 I
Ca_04147 Cicer arietinum Ca_04147 I
Ca_04370 Cicer arietinum Ca_04370 I
Ca_09638 Cicer arietinum Ca_09638 I
Ca_18387 Cicer arietinum Ca_18387 I
Ca_19135 Cicer arietinum Ca_19135 I
Ca_20968 Cicer arietinum Ca_20968 I
Cla003851 Citrullus lanatus Cla003851 I
Cla007205 Citrullus lanatus Cla007205 I
Cla007885 Citrullus lanatus Cla007885 I
Cla008608 Citrullus lanatus Cla008608 I
Cla014021 Citrullus lanatus Cla014021 I
Cla019618 Citrullus lanatus Cla019618 I
Pm022509 Prunus mume Pm022509 I
Pm028829 Prunus mume Pm028829 I
27965.m000108 Ricinus communis 27965.m000108 I
29863.m001066 Ricinus communis 29863.m001066 I
30131.m006971 Ricinus communis 30131.m006971 I
30147.m014403 Ricinus communis 30147.m014403 I
cassava10717.m1 Manihot esculenta cassava10717.m1 I
cassava12737.valid.m1 Manihot esculenta cassava12737.valid.m1 I
cassava14079.valid.m1 Manihot esculenta cassava14079.valid.m1 I
cassava19042.valid.m1 Manihot esculenta cassava19042.valid.m1 I
cassava19043.valid.m1 Manihot esculenta cassava19043.valid.m1 I
cassava19959.m1 Manihot esculenta cassava19959.m1 I
cassava21882.m1 Manihot esculenta cassava21882.m1 I
cassava40570.m1 Manihot esculenta cassava40570.m1 I
cassava45576.m1 Manihot esculenta cassava45576.m1 I
Cucsa.101370 Cucumis sativus Cucsa.101370 I
Cucsa.156890 Cucumis sativus Cucsa.156890 I
Cucsa.250290 Cucumis sativus Cucsa.250290 I
Cucsa.349200 Cucumis sativus Cucsa.349200 I
Cucsa.363830 Cucumis sativus Cucsa.363830 I
Cucsa.365850 Cucumis sativus Cucsa.365850 I
e_gw1.117.76.1 Physcomitrella patens e_gw1.117.76.1 I
mgf000075m Mimulus guttatus mgf000075m I
mgf019280m Mimulus guttatus mgf019280m I
mgf021642m Mimulus guttatus mgf021642m I
mgf022451m Mimulus guttatus mgf022451m I
Aquca_013_00161 Aquilegia coerulea Aquca_013_00161 I
Aquca_023_00168 Aquilegia coerulea Aquca_023_00168 I
Aquca_043_00039 Aquilegia coerulea Aquca_043_00039 I
Bostr.0568s0320 Boechera stricta Bostr.0568s0320 I
Bostr.12302s0024 Boechera stricta Bostr.12302s0024 I
Bostr.13129s0235 Boechera stricta Bostr.13129s0235 I
Bostr.15774s0146 Boechera stricta Bostr.15774s0146 I
Bostr.26833s0047 Boechera stricta Bostr.26833s0047 I
Bostr.7200s0089 Boechera stricta Bostr.7200s0089 I
Cagra.14503s0008 Capsella grandiflora Cagra.14503s0008 I
Cagra.2662s0009 Capsella grandiflora Cagra.2662s0009 I
Cagra.3842s0001 Capsella grandiflora Cagra.3842s0001 I
Cagra.4553s0019 Capsella grandiflora Cagra.4553s0019 I
Carubv10002723m.g Capsella rubella Carubv10002723m.g I
Carubv10010478m.g Capsella rubella Carubv10010478m.g I
Carubv10026540m.g Capsella rubella Carubv10026540m.g I
Carubv10027012m.g Capsella rubella Carubv10027012m.g I
Carubv10028647m.g Capsella rubella Carubv10028647m.g I
Ciclev10001138m.g Citrus clementina Ciclev10001138m.g I
Ciclev10003903m.g Citrus clementina Ciclev10003903m.g I
Ciclev10018158m.g Citrus clementina Ciclev10018158m.g I
Ciclev10026032m.g Citrus clementina Ciclev10026032m.g I
Ciclev10026052m.g Citrus clementina Ciclev10026052m.g I
Ciclev10032575m.g Citrus clementina Ciclev10032575m.g I
Eucgr.F02691 Eucalyptus grandis Eucgr.F02691 I
Eucgr.F04203 Eucalyptus grandis Eucgr.F04203 I
Eucgr.K02193 Eucalyptus grandis Eucgr.K02193 I
Eucgr.K02780 Eucalyptus grandis Eucgr.K02780 I
evm.TU.supercontig_13.175 Carica papaya evm.TU.supercontig_13.175 I
evm.TU.supercontig_49.94 Carica papaya evm.TU.supercontig_49.94 I
evm.TU.supercontig_72.47 Carica papaya evm.TU.supercontig_72.47 I
gene06407-v1.0-hybrid Fragaria vesca gene06407-v1.0-hybrid I
gene21091-v1.0-hybrid Fragaria vesca gene21091-v1.0-hybrid I
gene27604-v1.0-hybrid Fragaria vesca gene27604-v1.0-hybrid I
Gorai.003G048800 Gossypium raimondii Gorai.003G048800 I
Gorai.005G078100 Gossypium raimondii Gorai.005G078100 I
Gorai.008G075600 Gossypium raimondii Gorai.008G075600 I
Gorai.008G100500 Gossypium raimondii Gorai.008G100500 I
Gorai.008G210600 Gossypium raimondii Gorai.008G210600 I
Gorai.009G255400 Gossypium raimondii Gorai.009G255400 I
Gorai.010G131500 Gossypium raimondii Gorai.010G131500 I
Gorai.011G114900 Gossypium raimondii Gorai.011G114900 I
Lus10022426.g Linum usitatissimum Lus10022426.g I
Lus10028679.g Linum usitatissimum Lus10028679.g I
MDP0000186131 Malus domestica MDP0000186131 I
MDP0000226099 Malus domestica MDP0000226099 I
MDP0000229036 Malus domestica MDP0000229036 I
MDP0000235028 Malus domestica MDP0000235028 I
MDP0000242979 Malus domestica MDP0000242979 I
MDP0000894895 Malus domestica MDP0000894895 I
orange1.1g005229m.g Citrus sinensis orange1.1g005229m.g I
orange1.1g013225m.g Citrus sinensis orange1.1g013225m.g I
orange1.1g020801m.g Citrus sinensis orange1.1g020801m.g I
orange1.1g036963m.g Citrus sinensis orange1.1g036963m.g I
orange1.1g039390m.g Citrus sinensis orange1.1g039390m.g I
Pavir.Cb02005 Panicum virgatum Pavir.Cb02005 I
Pavir.Ea03713 Panicum virgatum Pavir.Ea03713 I
Pavir.Gb01735 Panicum virgatum Pavir.Gb01735 I
Pavir.Ha01720 Panicum virgatum Pavir.Ha01720 I
Pavir.Hb01784 Panicum virgatum Pavir.Hb01784 I
Pavir.J02402 Panicum virgatum Pavir.J02402 I
Pavir.J03755 Panicum virgatum Pavir.J03755 I
Pavir.J04335 Panicum virgatum Pavir.J04335 I
Pavir.J17038 Panicum virgatum Pavir.J17038 I
Pavir.J28880 Panicum virgatum Pavir.J28880 I
Pavir.J34881 Panicum virgatum Pavir.J34881 I
SapurV1A.0134s0150 Salix purpurea SapurV1A.0134s0150 I
SapurV1A.0327s0220 Salix purpurea SapurV1A.0327s0220 I
SapurV1A.0517s0130 Salix purpurea SapurV1A.0517s0130 I
SapurV1A.0787s0040 Salix purpurea SapurV1A.0787s0040 I
SapurV1A.0826s0010 Salix purpurea SapurV1A.0826s0010 I
Thhalv10004333m.g Eutrema salsugineum Thhalv10004333m.g I
Thhalv10005416m.g Eutrema salsugineum Thhalv10005416m.g I
Thhalv10014579m.g Eutrema salsugineum Thhalv10014579m.g I
Thhalv10015583m.g Eutrema salsugineum Thhalv10015583m.g I
chr1.CM0032.40.nd Lotus japonicus chr1.CM0032.40.nd I
chr1.CM0094.670.nd Lotus japonicus chr1.CM0094.670.nd I
chr1.CM1880.220.nd Lotus japonicus chr1.CM1880.220.nd I
chr2.LjT11L13.40.nc Lotus japonicus chr2.LjT11L13.40.nc I
chr4.CM0175.50.nd Lotus japonicus chr4.CM0175.50.nd I
chr4.CM0227.40.nd Lotus japonicus chr4.CM0227.40.nd I
chr5.CM0052.240.nd Lotus japonicus chr5.CM0052.240.nd I
LjT03L06.60.nd Lotus japonicus LjT03L06.60.nd I
PDK_20s1354201g001 Phoenix dactylifera PDK_20s1354201g001 I