Bostr.7200s0089 (Boechera stricta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Bostr.7200s0089 T007663_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABR1
M01051_2.00 		Arabidopsis thaliana
NYGSCGSCVNN
NNBGSCGSCRN		 PBM
Sullivan et al.(2014)
pTH7383 		0.822 0.980
ABR1
M06684_2.00 		Arabidopsis thaliana
CKCCGCCGYMDHHNYHNHH
DDNDRNDDHKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ABR1_col_a 		0.822 0.980
ABR1
M06685_2.00 		Arabidopsis thaliana
HNNHDSCGCCGCMAWHNNNNN
NNNNNDWTKGCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
ABR1_colamp_a 		0.822 0.980
RAP2-6
M00717_2.00 		Arabidopsis thaliana
NBGCYGNH
DNCRGCVN		 PBM
Chang et al.(2013)
pTH7225 		0.683 0.725
RAP2-6
M00841_2.00 		Arabidopsis thaliana
NGCCGHHNNN
NNNDDCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RAP2.6 		0.683 0.725
RAP2-6
M06579_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYMD
HKRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
RAP26_col_a 		0.683 0.725
RAP2-6
M06580_2.00 		Arabidopsis thaliana
CGCCGY
RCGGCG		 Dap-seq
OMalley et al.(2016)
RAP26_colamp_a 		0.683 0.725
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.7200s0089.1.p AP2 274 325

Links

Other AP2 family TFs
Other Boechera stricta TFs

269 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ABR1 Arabidopsis thaliana AT5G64750 D 0.822
Bo2g166380 Brassica oleracea Bo2g166380 I 0.822
Bo3g100930 Brassica oleracea Bo3g100930 I 0.822
Bra024325 Brassica rapa Bra024325 I 0.822
Bra031903 Brassica rapa Bra031903 I 0.822
ABR1 Arabidopsis lyrata fgenesh2_kg.8__2506__AT5G64750.1 I 0.822
Bostr.0568s0320 Boechera stricta Bostr.0568s0320 I 0.822
Cagra.2438s0028 Capsella grandiflora Cagra.2438s0028 I 0.822
Carubv10026540m.g Capsella rubella Carubv10026540m.g I 0.822
Thhalv10004333m.g Eutrema salsugineum Thhalv10004333m.g I 0.822
Bra037794 Brassica rapa Bra037794 I 0.804
Gorai.008G100500 Gossypium raimondii Gorai.008G100500 I 0.767
GSMUA_Achr6G18020_001 Musa acuminata GSMUA_Achr6G18020_001 I 0.765
Aquca_023_00168 Aquilegia coerulea Aquca_023_00168 I 0.761
AMTR_s00017p00232330 Amborella trichopoda AMTR_s00017p00232330 I 0.760
Cla008608 Citrullus lanatus Cla008608 I 0.757
SapurV1A.0787s0040 Salix purpurea SapurV1A.0787s0040 I 0.757
Gorai.003G048800 Gossypium raimondii Gorai.003G048800 I 0.756
27965.m000108 Ricinus communis 27965.m000108 I 0.752
cassava14079.valid.m1 Manihot esculenta cassava14079.valid.m1 I 0.752
Cucsa.101370 Cucumis sativus Cucsa.101370 I 0.751
POPTR_0005s08940 Populus trichocarpa POPTR_0005s08940 I 0.749
PRUPE_ppa006595mg Prunus persica PRUPE_ppa006595mg I 0.748
Pm028829 Prunus mume Pm028829 I 0.748
cassava21882.m1 Manihot esculenta cassava21882.m1 I 0.746
Ciclev10026032m.g Citrus clementina Ciclev10026032m.g I 0.746
orange1.1g039390m.g Citrus sinensis orange1.1g039390m.g I 0.746
MTR_3g095190 Medicago truncatula MTR_3g095190 I 0.744
Ca_04147 Cicer arietinum Ca_04147 I 0.744
MDP0000186131 Malus domestica MDP0000186131 I 0.742
MDP0000226099 Malus domestica MDP0000226099 I 0.742
MDP0000229036 Malus domestica MDP0000229036 I 0.740
GLYMA04G39510 Glycine max GLYMA04G39510 I 0.739
gene21091-v1.0-hybrid Fragaria vesca gene21091-v1.0-hybrid I 0.739
chr1.CM0032.40.nd Lotus japonicus chr1.CM0032.40.nd I 0.736
GLYMA10G36760 Glycine max GLYMA10G36760 I 0.733
GLYMA20G30835 Glycine max GLYMA20G30835 I 0.733
ERF110 Vitis vinifera VIT_18s0072g00260 I 0.733
Cla014021 Citrullus lanatus Cla014021 I 0.733
Pm022509 Prunus mume Pm022509 I 0.733
29863.m001066 Ricinus communis 29863.m001066 I 0.733
cassava12737.valid.m1 Manihot esculenta cassava12737.valid.m1 I 0.733
Cucsa.363830 Cucumis sativus Cucsa.363830 I 0.733
Carubv10028647m.g Capsella rubella Carubv10028647m.g I 0.733
Ciclev10001138m.g Citrus clementina Ciclev10001138m.g I 0.733
Eucgr.F04203 Eucalyptus grandis Eucgr.F04203 I 0.733
evm.TU.supercontig_49.94 Carica papaya evm.TU.supercontig_49.94 I 0.733
Gorai.005G078100 Gossypium raimondii Gorai.005G078100 I 0.733
Gorai.010G131500 Gossypium raimondii Gorai.010G131500 I 0.733
MDP0000235028 Malus domestica MDP0000235028 I 0.733
MDP0000242979 Malus domestica MDP0000242979 I 0.733
orange1.1g013225m.g Citrus sinensis orange1.1g013225m.g I 0.733
SapurV1A.0134s0150 Salix purpurea SapurV1A.0134s0150 I 0.733
Bra019622 Brassica rapa Bra019622 I 0.731
GRMZM2G457562 Zea mays GRMZM2G457562 I 0.727
LPERR05G14130 Leersia perrieri LPERR05G14130 I 0.727
OPUNC05G15760 Oryza punctata OPUNC05G15760 I 0.727
Cagra.14503s0008 Capsella grandiflora Cagra.14503s0008 I 0.727
Lus10028679.g Linum usitatissimum Lus10028679.g I 0.727
POPTR_0002s06620 Populus trichocarpa POPTR_0002s06620 I 0.726
TCM_035671 Theobroma cacao TCM_035671 I 0.726
chr5.CM0052.240.nd Lotus japonicus chr5.CM0052.240.nd I 0.726
mgf000075m Mimulus guttatus mgf000075m I 0.725
Thhalv10014579m.g Eutrema salsugineum Thhalv10014579m.g I 0.724
GLYMA02G08835 Glycine max GLYMA02G08835 I 0.723
GLYMA16G27950 Glycine max GLYMA16G27950 I 0.723
PGSC0003DMG400018803 Solanum tuberosum PGSC0003DMG400018803 I 0.723
Solyc12g056590.1 Solanum lycopersicum Solyc12g056590.1 I 0.723
Eucgr.F02691 Eucalyptus grandis Eucgr.F02691 I 0.723
chr2.LjT11L13.40.nc Lotus japonicus chr2.LjT11L13.40.nc I 0.723
OPUNC11G03940 Oryza punctata OPUNC11G03940 I 0.722
PGSC0003DMG400006369 Solanum tuberosum PGSC0003DMG400006369 I 0.722
Solyc04g071770.2 Solanum lycopersicum Solyc04g071770.2 I 0.722
evm.TU.supercontig_72.47 Carica papaya evm.TU.supercontig_72.47 I 0.722
Ciclev10026052m.g Citrus clementina Ciclev10026052m.g I 0.720
Gorai.009G255400 Gossypium raimondii Gorai.009G255400 I 0.720
orange1.1g020801m.g Citrus sinensis orange1.1g020801m.g I 0.720
LjT03L06.60.nd Lotus japonicus LjT03L06.60.nd I 0.720
MTR_1g098460 Medicago truncatula MTR_1g098460 I 0.719
cassava19042.valid.m1 Manihot esculenta cassava19042.valid.m1 I 0.719
cassava19043.valid.m1 Manihot esculenta cassava19043.valid.m1 I 0.719
gene27604-v1.0-hybrid Fragaria vesca gene27604-v1.0-hybrid I 0.719
Bo9g018330 Brassica oleracea Bo9g018330 I 0.718
BRADI2G56140 Brachypodium distachyon BRADI2G56140 I 0.717
MTR_6g037610 Medicago truncatula MTR_6g037610 I 0.717
Ca_19135 Cicer arietinum Ca_19135 I 0.717
ERF114 Arabidopsis thaliana AT5G61890 I 0.716
BGIOSGA034432 Oryza indica BGIOSGA034432 I 0.716
Bo2g161710 Brassica oleracea Bo2g161710 I 0.716
Bo3g109240 Brassica oleracea Bo3g109240 I 0.716
Bra029302 Brassica rapa Bra029302 I 0.716
GRMZM2G544539 Zea mays GRMZM2G544539 I 0.716
OGLUM11G04050 Oryza glumaepatula OGLUM11G04050 I 0.716
ONIVA11G04340 Oryza nivara ONIVA11G04340 I 0.716
ORGLA11G0040400 Oryza glaberrima ORGLA11G0040400 I 0.716
ORUFI11G04200 Oryza rufipogon ORUFI11G04200 I 0.716
OS11G0168500 Oryza sativa OS11G0168500 I 0.716
PGSC0003DMG400019693 Solanum tuberosum PGSC0003DMG400019693 I 0.716
scaffold_802838.1 Arabidopsis lyrata scaffold_802838.1 I 0.716
Bostr.26833s0047 Boechera stricta Bostr.26833s0047 I 0.716
Cagra.4553s0019 Capsella grandiflora Cagra.4553s0019 I 0.716
Carubv10027012m.g Capsella rubella Carubv10027012m.g I 0.716
Thhalv10005416m.g Eutrema salsugineum Thhalv10005416m.g I 0.716
GLYMA05G32040 Glycine max GLYMA05G32040 I 0.715
BGIOSGA000428 Oryza indica BGIOSGA000428 I 0.714
BGIOSGA019928 Oryza indica BGIOSGA019928 I 0.714
BRADI2G24170 Brachypodium distachyon BRADI2G24170 I 0.714
GRMZM2G100727 Zea mays GRMZM2G100727 I 0.714
GRMZM2G149756 Zea mays GRMZM2G149756 I 0.714
LPERR01G33110 Leersia perrieri LPERR01G33110 I 0.714
MLOC_7891 Hordeum vulgare MLOC_7891 I 0.714
OGLUM01G42800 Oryza glumaepatula OGLUM01G42800 I 0.714
OMERI01G35460 Oryza meridionalis OMERI01G35460 I 0.714
ONIVA01G43260 Oryza nivara ONIVA01G43260 I 0.714
ONIVA05G18720 Oryza nivara ONIVA05G18720 I 0.714
ORGLA01G0324200 Oryza glaberrima ORGLA01G0324200 I 0.714
ORGLA05G0154400 Oryza glaberrima ORGLA05G0154400 I 0.714
ORUFI01G41960 Oryza rufipogon ORUFI01G41960 I 0.714
ORUFI05G19030 Oryza rufipogon ORUFI05G19030 I 0.714
OS01G0868000 Oryza sativa OS01G0868000 I 0.714
OS05G0437100 Oryza sativa OS05G0437100 I 0.714
POPTR_0005s21690 Populus trichocarpa POPTR_0005s21690 I 0.714
Sb05g004170 Sorghum bicolor Sb05g004170 I 0.714
Si002010m.g Setaria italica Si002010m.g I 0.714
Pavir.Ea03713 Panicum virgatum Pavir.Ea03713 I 0.714
Pavir.J03755 Panicum virgatum Pavir.J03755 I 0.714
GRMZM2G076896 Zea mays GRMZM2G076896 I 0.712
Cla003851 Citrullus lanatus Cla003851 I 0.712
Cucsa.365850 Cucumis sativus Cucsa.365850 I 0.712
MTR_8g092460 Medicago truncatula MTR_8g092460 I 0.711
Pavir.Cb02005 Panicum virgatum Pavir.Cb02005 I 0.711
Pavir.J04335 Panicum virgatum Pavir.J04335 I 0.711
Si026709m.g Setaria italica Si026709m.g I 0.710
ABR1 Vitis vinifera VIT_07s0031g01980 I 0.710
Pavir.Ha01720 Panicum virgatum Pavir.Ha01720 I 0.710
Pavir.Hb01784 Panicum virgatum Pavir.Hb01784 I 0.710
SapurV1A.0327s0220 Salix purpurea SapurV1A.0327s0220 I 0.710
PGSC0003DMG400023593 Solanum tuberosum PGSC0003DMG400023593 I 0.709
Solyc04g012050.2 Solanum lycopersicum Solyc04g012050.2 I 0.709
Solyc12g042210.1 Solanum lycopersicum Solyc12g042210.1 I 0.708
Ca_04370 Cicer arietinum Ca_04370 I 0.707
Ca_18387 Cicer arietinum Ca_18387 I 0.707
ERF110 Arabidopsis thaliana AT5G50080 I 0.706
ERF110 Arabidopsis lyrata fgenesh2_kg.8__881__AT5G50080.1 I 0.706
LPERR12G03800 Leersia perrieri LPERR12G03800 I 0.706
TCM_001301 Theobroma cacao TCM_001301 I 0.706
Si013986m.g Setaria italica Si013986m.g I 0.704
Ca_09638 Cicer arietinum Ca_09638 I 0.703
30147.m014403 Ricinus communis 30147.m014403 I 0.703
Ciclev10032575m.g Citrus clementina Ciclev10032575m.g I 0.703
orange1.1g036963m.g Citrus sinensis orange1.1g036963m.g I 0.703
Sb08g004260 Sorghum bicolor Sb08g004260 I 0.702
Cla019618 Citrullus lanatus Cla019618 I 0.702
Cucsa.156890 Cucumis sativus Cucsa.156890 I 0.702
GSMUA_Achr10G09560_001 Musa acuminata GSMUA_Achr10G09560_001 I 0.701
Solyc04g051360.2 Solanum lycopersicum Solyc04g051360.2 I 0.701
mgf021642m Mimulus guttatus mgf021642m I 0.701
evm.TU.supercontig_13.175 Carica papaya evm.TU.supercontig_13.175 I 0.701
BGIOSGA036561 Oryza indica BGIOSGA036561 I 0.700
OBART12G04120 Oryza barthii OBART12G04120 I 0.700
OGLUM12G04880 Oryza glumaepatula OGLUM12G04880 I 0.700
ONIVA12G03810 Oryza nivara ONIVA12G03810 I 0.700
OPUNC12G04190 Oryza punctata OPUNC12G04190 I 0.700
ORUFI12G04720 Oryza rufipogon ORUFI12G04720 I 0.700
Ciclev10003903m.g Citrus clementina Ciclev10003903m.g I 0.700
orange1.1g005229m.g Citrus sinensis orange1.1g005229m.g I 0.700
MLOC_68290 Hordeum vulgare MLOC_68290 I 0.699
PGSC0003DMG400014240 Solanum tuberosum PGSC0003DMG400014240 I 0.699
Solyc03g118190.2 Solanum lycopersicum Solyc03g118190.2 I 0.699
Traes_5BL_60FC12DA6 Triticum aestivum Traes_5BL_60FC12DA6 I 0.699
Traes_5BS_80C46D9C4 Triticum aestivum Traes_5BS_80C46D9C4 I 0.699
MLOC_10878 Hordeum vulgare MLOC_10878 I 0.698
Sb07g025843 Sorghum bicolor Sb07g025843 I 0.698
mgf019280m Mimulus guttatus mgf019280m I 0.698
GLYMA06G15341 Glycine max GLYMA06G15341 I 0.697
Rap2.6L Vitis vinifera VIT_17s0000g00200 I 0.697
Pavir.J17038 Panicum virgatum Pavir.J17038 I 0.697
cassava10717.m1 Manihot esculenta cassava10717.m1 I 0.696
Lus10022426.g Linum usitatissimum Lus10022426.g I 0.696
Pavir.J28880 Panicum virgatum Pavir.J28880 I 0.696
GLYMA02G07310 Glycine max GLYMA02G07310 I 0.695
GLYMA16G26320 Glycine max GLYMA16G26320 I 0.695
GSMUA_Achr6G25680_001 Musa acuminata GSMUA_Achr6G25680_001 I 0.695
Eucgr.K02193 Eucalyptus grandis Eucgr.K02193 I 0.695
Eucgr.K02780 Eucalyptus grandis Eucgr.K02780 I 0.695
GSMUA_Achr8G08000_001 Musa acuminata GSMUA_Achr8G08000_001 I 0.694
Aquca_043_00039 Aquilegia coerulea Aquca_043_00039 I 0.694
SapurV1A.0826s0010 Salix purpurea SapurV1A.0826s0010 I 0.694
BGIOSGA029071 Oryza indica BGIOSGA029071 I 0.693
OMERI08G16840 Oryza meridionalis OMERI08G16840 I 0.693
ORGLA08G0225800 Oryza glaberrima ORGLA08G0225800 I 0.693
Ca_20968 Cicer arietinum Ca_20968 I 0.693
GSMUA_Achr2G21430_001 Musa acuminata GSMUA_Achr2G21430_001 I 0.692
POPTR_0007s07090 Populus trichocarpa POPTR_0007s07090 I 0.692
Cucsa.250290 Cucumis sativus Cucsa.250290 I 0.692
GLYMA06G17180 Glycine max GLYMA06G17180 I 0.690
GSMUA_Achr10G12150_001 Musa acuminata GSMUA_Achr10G12150_001 I 0.690
POPTR_0012s11030 Populus trichocarpa POPTR_0012s11030 I 0.690
TCM_014762 Theobroma cacao TCM_014762 I 0.690
Cla007205 Citrullus lanatus Cla007205 I 0.690
cassava19959.m1 Manihot esculenta cassava19959.m1 I 0.690
Cucsa.349200 Cucumis sativus Cucsa.349200 I 0.690
Cagra.3842s0001 Capsella grandiflora Cagra.3842s0001 I 0.690
Carubv10010478m.g Capsella rubella Carubv10010478m.g I 0.690
gene06407-v1.0-hybrid Fragaria vesca gene06407-v1.0-hybrid I 0.690
Gorai.011G114900 Gossypium raimondii Gorai.011G114900 I 0.690
SapurV1A.0517s0130 Salix purpurea SapurV1A.0517s0130 I 0.690
chr1.CM0094.670.nd Lotus japonicus chr1.CM0094.670.nd I 0.690
BGIOSGA016313 Oryza indica BGIOSGA016313 I 0.689
BRADI5G08380 Brachypodium distachyon BRADI5G08380 I 0.689
F775_31480 Aegilops tauschii F775_31480 I 0.689
GRMZM2G087059 Zea mays GRMZM2G087059 I 0.689
GRMZM2G425798 Zea mays GRMZM2G425798 I 0.689
GSMUA_Achr6G08140_001 Musa acuminata GSMUA_Achr6G08140_001 I 0.689
LPERR04G07810 Leersia perrieri LPERR04G07810 I 0.689
OB04G18180 Oryza brachyantha OB04G18180 I 0.689
OGLUM04G10750 Oryza glumaepatula OGLUM04G10750 I 0.689
ONIVA04G08960 Oryza nivara ONIVA04G08960 I 0.689
OPUNC04G09060 Oryza punctata OPUNC04G09060 I 0.689
ORGLA02G0353700 Oryza glaberrima ORGLA02G0353700 I 0.689
ORGLA04G0080400 Oryza glaberrima ORGLA04G0080400 I 0.689
ORUFI04G12250 Oryza rufipogon ORUFI04G12250 I 0.689
OS04G0398000 Oryza sativa OS04G0398000 I 0.689
Si010289m.g Setaria italica Si010289m.g I 0.689
Traes_2AL_6B6086A7C Triticum aestivum Traes_2AL_6B6086A7C I 0.689
Traes_2BL_E5F50498D Triticum aestivum Traes_2BL_E5F50498D I 0.689
Traes_2DL_2536A1C8C Triticum aestivum Traes_2DL_2536A1C8C I 0.689
cassava40570.m1 Manihot esculenta cassava40570.m1 I 0.689
Pavir.Gb01735 Panicum virgatum Pavir.Gb01735 I 0.689
Pavir.J34881 Panicum virgatum Pavir.J34881 I 0.689
PDK_20s1354201g001 Phoenix dactylifera PDK_20s1354201g001 I 0.689
MTR_3g098580 Medicago truncatula MTR_3g098580 I 0.688
Ca_01387 Cicer arietinum Ca_01387 I 0.688
Bostr.12302s0024 Boechera stricta Bostr.12302s0024 I 0.688
Pavir.J02402 Panicum virgatum Pavir.J02402 I 0.688
Bo3g004290 Brassica oleracea Bo3g004290 I 0.687
MDP0000894895 Malus domestica MDP0000894895 I 0.687
e_gw1.117.76.1 Physcomitrella patens e_gw1.117.76.1 I 0.685
Bostr.15774s0146 Boechera stricta Bostr.15774s0146 I 0.685
chr4.CM0175.50.nd Lotus japonicus chr4.CM0175.50.nd I 0.685
GLYMA16G05190 Glycine max GLYMA16G05190 I 0.684
GLYMA19G27790 Glycine max GLYMA19G27790 I 0.684
TCM_017352 Theobroma cacao TCM_017352 I 0.684
VIT_01s0150g00120 Vitis vinifera VIT_01s0150g00120 I 0.684
RAP2-6 Arabidopsis thaliana AT1G43160 D 0.683
30131.m006971 Ricinus communis 30131.m006971 I 0.683
cassava45576.m1 Manihot esculenta cassava45576.m1 I 0.683
mgf022451m Mimulus guttatus mgf022451m I 0.683
Gorai.008G075600 Gossypium raimondii Gorai.008G075600 I 0.683
Gorai.008G210600 Gossypium raimondii Gorai.008G210600 I 0.683
chr1.CM1880.220.nd Lotus japonicus chr1.CM1880.220.nd I 0.683
Bo9g175390 Brassica oleracea Bo9g175390 I 0.682
Bra009272 Brassica rapa Bra009272 I 0.682
fgenesh2_kg.6__690__AT5G07310.1 Arabidopsis lyrata fgenesh2_kg.6__690__AT5G07310.1 I 0.682
Bostr.13129s0235 Boechera stricta Bostr.13129s0235 I 0.682
Cagra.2662s0009 Capsella grandiflora Cagra.2662s0009 I 0.682
Carubv10002723m.g Capsella rubella Carubv10002723m.g I 0.682
Thhalv10015583m.g Eutrema salsugineum Thhalv10015583m.g I 0.682
AMTR_s00016p00092590 Amborella trichopoda AMTR_s00016p00092590 I 0.681
Bo2g008570 Brassica oleracea Bo2g008570 I 0.681
Cla007885 Citrullus lanatus Cla007885 I 0.681
GSMUA_Achr6G02310_001 Musa acuminata GSMUA_Achr6G02310_001 I 0.680
Bra005932 Brassica rapa Bra005932 I 0.679
GRMZM2G309731 Zea mays GRMZM2G309731 I 0.678
VIT_14s0068g01040 Vitis vinifera VIT_14s0068g01040 I 0.678
Ciclev10018158m.g Citrus clementina Ciclev10018158m.g I 0.678
chr4.CM0227.40.nd Lotus japonicus chr4.CM0227.40.nd I 0.678
PRUPE_ppa008772mg Prunus persica PRUPE_ppa008772mg I 0.677
Aquca_013_00161 Aquilegia coerulea Aquca_013_00161 I 0.677