Ciclev10026052m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10026052m.g T008060_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABR1
M01051_2.00 		Arabidopsis thaliana
NYGSCGSCVNN
NNBGSCGSCRN		 PBM
Sullivan et al.(2014)
pTH7383 		0.720 0.941
ABR1
M06684_2.00 		Arabidopsis thaliana
CKCCGCCGYMDHHNYHNHH
DDNDRNDDHKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ABR1_col_a 		0.720 0.941
ABR1
M06685_2.00 		Arabidopsis thaliana
HNNHDSCGCCGCMAWHNNNNN
NNNNNDWTKGCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
ABR1_colamp_a 		0.720 0.941
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.701 0.765
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.701 0.765
ERF11
M01606_2.00 		Arabidopsis thaliana
NHGCCGNHNN
NNDNCGGCDN		 PBM
Weirauch et al.(2014)
pTH8117 		0.677 0.765
ERF11
M06575_2.00 		Arabidopsis thaliana
NHNNHDSCGCCGYCRHHNNN
NNNDDYGRCGGCGSHDNNDN		 Dap-seq
OMalley et al.(2016)
ERF11_colamp_a 		0.677 0.765
ERF11
M06576_2.00 		Arabidopsis thaliana
NHNYCKCCGCCGYHD
HDRCGGCGGMGRNDN		 Dap-seq
OMalley et al.(2016)
ERF11_col_b 		0.677 0.765
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10026052m AP2 144 195

Links

Other AP2 family TFs
Other Citrus clementina TFs

222 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g020801m.g Citrus sinensis orange1.1g020801m.g I 0.862
Gorai.003G048800 Gossypium raimondii Gorai.003G048800 I 0.805
orange1.1g039390m.g Citrus sinensis orange1.1g039390m.g I 0.795
Ciclev10026032m.g Citrus clementina Ciclev10026032m.g I 0.795
GLYMA05G32040 Glycine max GLYMA05G32040 I 0.764
MTR_8g092460 Medicago truncatula MTR_8g092460 I 0.761
Solyc04g012050.2 Solanum lycopersicum Solyc04g012050.2 I 0.758
PGSC0003DMG400023593 Solanum tuberosum PGSC0003DMG400023593 I 0.758
Si013986m.g Setaria italica Si013986m.g I 0.753
Ca_09638 Cicer arietinum Ca_09638 I 0.752
Sb08g004260 Sorghum bicolor Sb08g004260 I 0.751
ORUFI12G04720 Oryza rufipogon ORUFI12G04720 I 0.749
OPUNC12G04190 Oryza punctata OPUNC12G04190 I 0.749
BGIOSGA036561 Oryza indica BGIOSGA036561 I 0.749
OGLUM12G04880 Oryza glumaepatula OGLUM12G04880 I 0.749
ONIVA12G03810 Oryza nivara ONIVA12G03810 I 0.749
OBART12G04120 Oryza barthii OBART12G04120 I 0.749
Sb07g025843 Sorghum bicolor Sb07g025843 I 0.747
MLOC_10878 Hordeum vulgare MLOC_10878 I 0.747
Rap2.6L Vitis vinifera VIT_17s0000g00200 I 0.746
Pavir.J28880 Panicum virgatum Pavir.J28880 I 0.745
ORGLA08G0225800 Oryza glaberrima ORGLA08G0225800 I 0.743
OMERI08G16840 Oryza meridionalis OMERI08G16840 I 0.743
BGIOSGA029071 Oryza indica BGIOSGA029071 I 0.743
GSMUA_Achr10G12150_001 Musa acuminata GSMUA_Achr10G12150_001 I 0.740
ORGLA02G0353700 Oryza glaberrima ORGLA02G0353700 I 0.739
GRMZM2G425798 Zea mays GRMZM2G425798 I 0.739
ONIVA04G08960 Oryza nivara ONIVA04G08960 I 0.739
GSMUA_Achr6G08140_001 Musa acuminata GSMUA_Achr6G08140_001 I 0.739
ORGLA04G0080400 Oryza glaberrima ORGLA04G0080400 I 0.739
OPUNC04G09060 Oryza punctata OPUNC04G09060 I 0.739
OGLUM04G10750 Oryza glumaepatula OGLUM04G10750 I 0.739
LPERR04G07810 Leersia perrieri LPERR04G07810 I 0.739
OS04G0398000 Oryza sativa OS04G0398000 I 0.739
BRADI5G08380 Brachypodium distachyon BRADI5G08380 I 0.739
ORUFI04G12250 Oryza rufipogon ORUFI04G12250 I 0.739
Traes_2BL_E5F50498D Triticum aestivum Traes_2BL_E5F50498D I 0.739
Traes_2DL_2536A1C8C Triticum aestivum Traes_2DL_2536A1C8C I 0.739
Pavir.Gb01735 Panicum virgatum Pavir.Gb01735 I 0.739
F775_31480 Aegilops tauschii F775_31480 I 0.739
Traes_2AL_6B6086A7C Triticum aestivum Traes_2AL_6B6086A7C I 0.739
OB04G18180 Oryza brachyantha OB04G18180 I 0.739
GRMZM2G087059 Zea mays GRMZM2G087059 I 0.739
BGIOSGA016313 Oryza indica BGIOSGA016313 I 0.739
Si010289m.g Setaria italica Si010289m.g I 0.739
Pavir.J34881 Panicum virgatum Pavir.J34881 I 0.739
VIT_01s0150g00120 Vitis vinifera VIT_01s0150g00120 I 0.733
LPERR02G27530 Leersia perrieri LPERR02G27530 I 0.733
mgf022451m Mimulus guttatus mgf022451m I 0.732
SELMODRAFT_73177 Selaginella moellendorffii SELMODRAFT_73177 I 0.731
SELMODRAFT_73174 Selaginella moellendorffii SELMODRAFT_73174 I 0.731
AMTR_s00016p00092590 Amborella trichopoda AMTR_s00016p00092590 I 0.730
BRADI3G41543 Brachypodium distachyon BRADI3G41543 I 0.727
GRMZM2G309731 Zea mays GRMZM2G309731 I 0.727
ORGLA02G0170800 Oryza glaberrima ORGLA02G0170800 I 0.725
ORUFI02G21030 Oryza rufipogon ORUFI02G21030 I 0.725
OS02G0546600 Oryza sativa OS02G0546600 I 0.725
SapurV1A.0340s0060 Salix purpurea SapurV1A.0340s0060 I 0.725
OPUNC02G17880 Oryza punctata OPUNC02G17880 I 0.725
chr1.LjT14I13.10.nd Lotus japonicus chr1.LjT14I13.10.nd I 0.725
OBART02G19930 Oryza barthii OBART02G19930 I 0.725
LjT03L06.60.nd Lotus japonicus LjT03L06.60.nd I 0.725
OGLUM02G34120 Oryza glumaepatula OGLUM02G34120 I 0.724
cassava16948.m1 Manihot esculenta cassava16948.m1 I 0.724
OPUNC08G19980 Oryza punctata OPUNC08G19980 I 0.724
30128.m008556 Ricinus communis 30128.m008556 I 0.724
cassava16956.m1 Manihot esculenta cassava16956.m1 I 0.724
cassava14904.m1 Manihot esculenta cassava14904.m1 I 0.724
Gorai.012G125700 Gossypium raimondii Gorai.012G125700 I 0.724
BGIOSGA005557 Oryza indica BGIOSGA005557 I 0.724
ORGLA02G0291300 Oryza glaberrima ORGLA02G0291300 I 0.724
OBART02G33690 Oryza barthii OBART02G33690 I 0.724
ONIVA02G33420 Oryza nivara ONIVA02G33420 I 0.724
PK12040.1 Cannabis sativa PK12040.1 I 0.724
Bra037794 Brassica rapa Bra037794 I 0.723
POPTR_0001s12990 Populus trichocarpa POPTR_0001s12990 I 0.723
XM_002304604.1 Populus trichocarpa POPTR_0003s16090 I 0.722
Gorai.005G197100 Gossypium raimondii Gorai.005G197100 I 0.722
TCM_008334 Theobroma cacao TCM_008334 I 0.722
SapurV1A.0499s0150 Salix purpurea SapurV1A.0499s0150 I 0.722
ORUFI02G21040 Oryza rufipogon ORUFI02G21040 I 0.721
GSMUA_Achr11G09660_001 Musa acuminata GSMUA_Achr11G09660_001 I 0.721
MTR_7g020980 Medicago truncatula MTR_7g020980 I 0.721
Bo2g166380 Brassica oleracea Bo2g166380 I 0.720
Carubv10026540m.g Capsella rubella Carubv10026540m.g I 0.720
Bo3g100930 Brassica oleracea Bo3g100930 I 0.720
Bra024325 Brassica rapa Bra024325 I 0.720
ABR1 Arabidopsis lyrata fgenesh2_kg.8__2506__AT5G64750.1 I 0.720
Bostr.0568s0320 Boechera stricta Bostr.0568s0320 I 0.720
ABR1 Arabidopsis thaliana AT5G64750 D 0.720
Bostr.7200s0089 Boechera stricta Bostr.7200s0089 I 0.720
OGLUM02G20200 Oryza glumaepatula OGLUM02G20200 I 0.720
Cagra.2438s0028 Capsella grandiflora Cagra.2438s0028 I 0.720
Thhalv10004333m.g Eutrema salsugineum Thhalv10004333m.g I 0.720
Bra031903 Brassica rapa Bra031903 I 0.720
GSMUA_Achr2G21430_001 Musa acuminata GSMUA_Achr2G21430_001 I 0.719
GRMZM2G175525 Zea mays GRMZM2G175525 I 0.719
PGSC0003DMG400025582 Solanum tuberosum PGSC0003DMG400025582 I 0.718
Solyc06g068830.1 Solanum lycopersicum Solyc06g068830.1 I 0.718
Si010967m.g Setaria italica Si010967m.g I 0.717
Gorai.008G100500 Gossypium raimondii Gorai.008G100500 I 0.716
ORGLA09G0098000 Oryza glaberrima ORGLA09G0098000 I 0.715
OBART09G12810 Oryza barthii OBART09G12810 I 0.715
evm.TU.supercontig_38.79 Carica papaya evm.TU.supercontig_38.79 I 0.715
ONIVA03G20710 Oryza nivara ONIVA03G20710 I 0.715
OGLUM09G13230 Oryza glumaepatula OGLUM09G13230 I 0.715
MDP0000390121 Malus domestica MDP0000390121 I 0.715
ORUFI09G13770 Oryza rufipogon ORUFI09G13770 I 0.715
BGIOSGA030907 Oryza indica BGIOSGA030907 I 0.715
PRUPE_ppa011097mg Prunus persica PRUPE_ppa011097mg I 0.715
OS09G0457900 Oryza sativa OS09G0457900 I 0.715
Pm007084 Prunus mume Pm007084 I 0.715
LPERR04G09480 Leersia perrieri LPERR04G09480 I 0.714
OS02G0764700 Oryza sativa OS02G0764700 I 0.713
gw1.160.53.1 Physcomitrella patens gw1.160.53.1 I 0.712
Ciclev10005787m.g Citrus clementina Ciclev10005787m.g I 0.712
orange1.1g043184m.g Citrus sinensis orange1.1g043184m.g I 0.712
Pavir.Ab01891 Panicum virgatum Pavir.Ab01891 I 0.710
MTR_7g021010 Medicago truncatula MTR_7g021010 I 0.708
Bo3g009120 Brassica oleracea Bo3g009120 I 0.708
Bra006195 Brassica rapa Bra006195 I 0.708
GLYMA18G51680 Glycine max GLYMA18G51680 I 0.708
GLYMA08G28835 Glycine max GLYMA08G28835 I 0.708
MDP0000316694 Malus domestica MDP0000316694 I 0.707
Eucgr.B03559 Eucalyptus grandis Eucgr.B03559 I 0.707
LPERR08G14810 Leersia perrieri LPERR08G14810 I 0.707
Sb06g016710 Sorghum bicolor Sb06g016710 I 0.706
SapurV1A.0787s0040 Salix purpurea SapurV1A.0787s0040 I 0.706
cassava4507.m1 Manihot esculenta cassava4507.m1 I 0.703
evm.TU.supercontig_55.155 Carica papaya evm.TU.supercontig_55.155 I 0.703
GSMUA_Achr6G18020_001 Musa acuminata GSMUA_Achr6G18020_001 I 0.703
GLYMA08G15350 Glycine max GLYMA08G15350 I 0.702
OPUNC02G31100 Oryza punctata OPUNC02G31100 I 0.702
Pavir.J15316 Panicum virgatum Pavir.J15316 I 0.702
A4F248_TOBAC Nicotiana tabacum A4F248_TOBAC D 0.701
cassava14079.valid.m1 Manihot esculenta cassava14079.valid.m1 I 0.701
A4F249_TOBAC Nicotiana tabacum A4F249_TOBAC D 0.701
27965.m000108 Ricinus communis 27965.m000108 I 0.701
Ca_20968 Cicer arietinum Ca_20968 I 0.701
OMERI02G32080 Oryza meridionalis OMERI02G32080 I 0.700
Aquca_023_00168 Aquilegia coerulea Aquca_023_00168 I 0.699
GLYMA07G33511 Glycine max GLYMA07G33511 I 0.699
GSMUA_Achr8G08000_001 Musa acuminata GSMUA_Achr8G08000_001 I 0.699
AMTR_s00017p00232330 Amborella trichopoda AMTR_s00017p00232330 I 0.698
POPTR_0005s08940 Populus trichocarpa POPTR_0005s08940 I 0.698
Pm028829 Prunus mume Pm028829 I 0.698
PRUPE_ppa006595mg Prunus persica PRUPE_ppa006595mg I 0.698
SELMODRAFT_28277 Selaginella moellendorffii SELMODRAFT_28277 I 0.697
SELMODRAFT_131245 Selaginella moellendorffii SELMODRAFT_131245 I 0.697
Traes_5BL_F5D379AFC Triticum aestivum Traes_5BL_F5D379AFC I 0.695
Cla008608 Citrullus lanatus Cla008608 I 0.695
cassava21882.m1 Manihot esculenta cassava21882.m1 I 0.695
PK15705.1 Cannabis sativa PK15705.1 I 0.695
Ca_04147 Cicer arietinum Ca_04147 I 0.693
MTR_3g095190 Medicago truncatula MTR_3g095190 I 0.693
29801.m003186 Ricinus communis 29801.m003186 I 0.691
MDP0000186131 Malus domestica MDP0000186131 I 0.691
cassava40570.m1 Manihot esculenta cassava40570.m1 I 0.691
MDP0000226099 Malus domestica MDP0000226099 I 0.691
GRMZM2G103085 Zea mays GRMZM2G103085 I 0.691
MDP0000180950 Malus domestica MDP0000180950 I 0.690
Solyc10g050970.1 Solanum lycopersicum Solyc10g050970.1 I 0.690
OS04G0429050 Oryza sativa OS04G0429050 I 0.690
ONIVA04G10960 Oryza nivara ONIVA04G10960 I 0.690
ORUFI04G13990 Oryza rufipogon ORUFI04G13990 I 0.690
OMERI04G11450 Oryza meridionalis OMERI04G11450 I 0.690
ORGLA04G0098100 Oryza glaberrima ORGLA04G0098100 I 0.690
Cucsa.219890 Cucumis sativus Cucsa.219890 I 0.689
Pavir.J03216 Panicum virgatum Pavir.J03216 I 0.689
Cucsa.101370 Cucumis sativus Cucsa.101370 I 0.689
Cla016262 Citrullus lanatus Cla016262 I 0.689
MDP0000229036 Malus domestica MDP0000229036 I 0.689
gene21091-v1.0-hybrid Fragaria vesca gene21091-v1.0-hybrid I 0.688
PGSC0003DMG400019693 Solanum tuberosum PGSC0003DMG400019693 I 0.688
GLYMA04G39510 Glycine max GLYMA04G39510 I 0.688
Eucgr.A01091 Eucalyptus grandis Eucgr.A01091 I 0.688
Pavir.Aa01729 Panicum virgatum Pavir.Aa01729 I 0.688
Pavir.J32690 Panicum virgatum Pavir.J32690 I 0.687
Cla003319 Citrullus lanatus Cla003319 I 0.687
chr4.CM0227.40.nd Lotus japonicus chr4.CM0227.40.nd I 0.687
Cucsa.190200 Cucumis sativus Cucsa.190200 I 0.687
Sb04g022245 Sorghum bicolor Sb04g022245 I 0.685
Solyc05g052040.1 Solanum lycopersicum Solyc05g052040.1 I 0.685
chr1.CM0032.40.nd Lotus japonicus chr1.CM0032.40.nd I 0.685
MDP0000175375 Malus domestica MDP0000175375 I 0.684
mgf021756m Mimulus guttatus mgf021756m I 0.684
PGSC0003DMG400026049 Solanum tuberosum PGSC0003DMG400026049 I 0.684
Solyc02g090790.1 Solanum lycopersicum Solyc02g090790.1 I 0.684
Solyc02g090770.1 Solanum lycopersicum Solyc02g090770.1 I 0.683
SapurV1A.0007s0970 Salix purpurea SapurV1A.0007s0970 I 0.682
SapurV1A.0134s0150 Salix purpurea SapurV1A.0134s0150 I 0.682
MDP0000242979 Malus domestica MDP0000242979 I 0.682
chr5.CM0909.360.nc Lotus japonicus chr5.CM0909.360.nc I 0.682
orange1.1g013225m.g Citrus sinensis orange1.1g013225m.g I 0.682
Cla014021 Citrullus lanatus Cla014021 I 0.682
Pm022509 Prunus mume Pm022509 I 0.682
29863.m001066 Ricinus communis 29863.m001066 I 0.682
MDP0000235028 Malus domestica MDP0000235028 I 0.682
ERF110 Vitis vinifera VIT_18s0072g00260 I 0.682
Si019157m.g Setaria italica Si019157m.g I 0.682
GLYMA20G30835 Glycine max GLYMA20G30835 I 0.682
GLYMA10G36760 Glycine max GLYMA10G36760 I 0.682
Si018144m.g Setaria italica Si018144m.g I 0.682
Cucsa.363830 Cucumis sativus Cucsa.363830 I 0.682
cassava12737.valid.m1 Manihot esculenta cassava12737.valid.m1 I 0.682
Ciclev10001138m.g Citrus clementina Ciclev10001138m.g I 0.682
Eucgr.F04203 Eucalyptus grandis Eucgr.F04203 I 0.682
Carubv10028647m.g Capsella rubella Carubv10028647m.g I 0.682
evm.TU.supercontig_49.94 Carica papaya evm.TU.supercontig_49.94 I 0.682
Gorai.010G131500 Gossypium raimondii Gorai.010G131500 I 0.682
Gorai.005G078100 Gossypium raimondii Gorai.005G078100 I 0.682
F775_21583 Aegilops tauschii F775_21583 I 0.681
evm.TU.supercontig_44.73 Carica papaya evm.TU.supercontig_44.73 I 0.681
cassava8409.m1 Manihot esculenta cassava8409.m1 I 0.681
Aquca_013_00161 Aquilegia coerulea Aquca_013_00161 I 0.681
GSMUA_Achr4G06170_001 Musa acuminata GSMUA_Achr4G06170_001 I 0.680
PGSC0003DMG400004024 Solanum tuberosum PGSC0003DMG400004024 I 0.680
GSMUA_Achr10G09560_001 Musa acuminata GSMUA_Achr10G09560_001 I 0.679
GLYMA10G33810 Glycine max GLYMA10G33810 I 0.678
gw1.259.19.1 Physcomitrella patens gw1.259.19.1 I 0.678
OB02G40600 Oryza brachyantha OB02G40600 I 0.677
ERF11 Arabidopsis thaliana AT1G28370 D 0.677