estExt_fgenesh2_pm.C_3240002 (Branchiostoma floridae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 estExt_fgenesh2_pm.C_3240002 T334038_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pm.C_3240002 Sox 168 213

Links

Other Sox family TFs
Other Branchiostoma floridae TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACEP12759 Atta cephalotes ACEP12759 I 0.608
ACYPI003297 Acyrthosiphon pisum ACYPI003297 I 0.565
CapteG224864 Capitella teleta CapteG224864 I 0.624
GH18160 Drosophila grimshawi FBgn0125628 I 0.547
GK13574 Drosophila willistoni FBgn0215582 I 0.547
GE25578 Drosophila yakuba FBgn0242642 I 0.547
GB50764 Apis mellifera GB50764 I 0.615
GSMUA_Achr4G22750_001 Musa acuminata GSMUA_Achr4G22750_001 I 0.428
GSMUA_Achr4G31310_001 Musa acuminata GSMUA_Achr4G31310_001 I 0.428
KGM_20190 Danaus plexippus KGM_20190 I 0.621
MCINX012524 Melitaea cinxia MCINX012524 I 0.621
NEMVEDRAFT_v1g201358 Nematostella vectensis NEMVEDRAFT_v1g201358 I 0.624
NV13812 Nasonia vitripennis NV13812 I 0.626
SINV12391 Solenopsis invicta SINV12391 I 0.608
tetur18g00680 Tetranychus urticae tetur18g00680 I 0.601
Cflo_06133--XP_394373.1_APIME Camponotus floridanus Cflo_06133--XP_394373.1_APIME I 0.615
Hsal_04778--XP_394373.1_APIME Harpegnathos saltator Hsal_04778--XP_394373.1_APIME I 0.608
cassava26804.m1 Manihot esculenta cassava26804.m1 I 0.439
mgf019496m Mimulus guttatus mgf019496m I 0.433
Ocbimv22013575m.g Octopus bimaculoides Ocbimv22013575m.g I 0.653
HHAL005242-PA Halyomorpha halys HHAL005242-PA I 0.613
MDOA001488 Musca domestica MDOA001488 I 0.598
CpipJ_CPIJ005084 Culex pipiens CpipJ_CPIJ005084 N 0.584
SPRG_06372 Saprolegnia parasitica SPRG_06372 N 0.532
AAEL008417 Aedes aegypti AAEL008417 N 0.580
ADAC009894 Anopheles darlingi ADAC009894 N 0.630
AGAP004110 Anopheles gambiae AGAP004110 N 0.662
ALNC14_126360 Albugo laibachii ALNC14_126360 N 0.475
BGIBMGA013514 Bombyx mori BGIBMGA013514 N 0.583
CBN09380 Caenorhabditis brenneri CBN09380 N 0.592
CGI_10019404 Crassostrea gigas CGI_10019404 N 0.669
CJA05209 Caenorhabditis japonica CJA05209 N 0.592
CPIJ005084 Culex quinquefasciatus CPIJ005084 N 0.584
CRE03905 Caenorhabditis remanei CRE03905 N 0.592
DAPPUDRAFT_303074 Daphnia pulex DAPPUDRAFT_303074 N 0.577
EFV51436 Trichinella spiralis EFV51436 N 0.456
ENSCING00000023833 Ciona intestinalis ENSCING00000023833 N 0.481
ccdc124 Oryzias latipes ENSORLG00000015728 N 0.624
F443_19335 Phytophthora parasitica F443_19335 N 0.521
fgenesh_scip_prom.28083.7036 Phytophthora lateralis fgenesh_scip_prom.28083.7036 N 0.495
fgenesh_scip_prom.46568.2049 Phytophthora kernoviae fgenesh_scip_prom.46568.2049 N 0.521
GUITHDRAFT_162866 Guillardia theta GUITHDRAFT_162866 N 0.533
HelroG66455 Helobdella robusta HelroG66455 N 0.621
HMEL009197 Heliconius melpomene HMEL009197 N 0.576
ISCW011313 Ixodes scapularis ISCW011313 N 0.670
LotgiG126557 Lottia gigantea LotgiG126557 N 0.587
maker-pir_contig_430-fgenesh-gene-0.3 Pythium irregulare maker-pir_contig_430-fgenesh-gene-0.3 N 0.532
maker-piw_contig_1911-snap-gene-0.6 Pythium iwayamai maker-piw_contig_1911-snap-gene-0.6 N 0.532
maker-pve_contig_105-snap-gene-0.29 Pythium vexans maker-pve_contig_105-snap-gene-0.29 N 0.488
ML11467a Mnemiopsis leidyi ML11467a N 0.451
PHUM036320 Pediculus humanus PHUM036320 N 0.665
Phyra74523 Phytophthora ramorum Phyra74523 N 0.495
Physo132366 Phytophthora sojae Physo132366 N 0.521
PYU1_G003004 Pythium ultimum PYU1_G003004 N 0.532
RPRC009760 Rhodnius prolixus RPRC009760 N 0.555
Smp_004360 Schistosoma mansoni Smp_004360 N 0.460
SPU_001776 Strongylocentrotus purpuratus SPU_001776 N 0.608
TC004658 Tribolium castaneum TC004658 N 0.583
TGME49_037260 Toxoplasma gondii TGME49_037260 N 0.506
Y73E7A.1 Caenorhabditis elegans WBGene00022268 N 0.597
cgd2_870 Cryptosporidium parvum cgd2_870 N 0.461
Chro.20098 Cryptosporidium hominis Chro.20098 N 0.417
NCLIV_051130 Neospora caninum NCLIV_051130 N 0.475
estExt_fgenesh2_pg.C_1070085 Branchiostoma floridae estExt_fgenesh2_pg.C_1070085 N 0.741
fgenesh1_pm.2_#_13 Coccomyxa subellipsoidea C169 fgenesh1_pm.2_#_13 N 0.480
CLEC000086 Cimex lectularius CLEC000086 N 0.560
CLEC002888 Cimex lectularius CLEC002888 N 0.605
ETH_00032160 Eimeria tenella ETH_00032160 N 0.513
LCUP006380 Lucilia cuprina LCUP006380 N 0.502
Sjc_0011880 Schistosoma japonicum Sjc_0011880 N 0.467
SMU15012775 Schmidtea mediterranea SMU15012775 N 0.453
estExt_fgenesh1_kg.C_80399 Phytophthora capsici estExt_fgenesh1_kg.C_80399 N 0.521
fgenesh1_pg.C_scaffold_73784000001 Phytophthora capsici fgenesh1_pg.C_scaffold_73784000001 N 0.521
fgeneshCV_pg.C_scaffold_2000022 Chlorella vulgaris fgeneshCV_pg.C_scaffold_2000022 N 0.480
Minc12734 Meloidogyne incognita Minc12734 N 0.589
AALB007196 Anopheles albimanus AALB007196 N 0.630
AARA009694 Anopheles arabiensis AARA009694 N 0.662
AATE006267 Anopheles atroparvus AATE006267 N 0.601
ACHR002403 Anopheles christyi ACHR002403 N 0.662
ACOM033320 Anopheles coluzzii ACOM033320 N 0.662
ACUA003510 Anopheles culicifacies ACUA003510 N 0.662
ADIR002941 Anopheles dirus ADIR002941 N 0.630
AEPI008570 Anopheles epiroticus AEPI008570 N 0.662
AFAF018499 Anopheles farauti AFAF018499 N 0.630
AFUN011346 Anopheles funestus AFUN011346 N 0.630
AMAM021723 Anopheles maculatus AMAM021723 N 0.585
AMEC005071 Anopheles melas AMEC005071 N 0.662
AMEM002948 Anopheles merus AMEM002948 N 0.662
AMIN003838 Anopheles minimus AMIN003838 N 0.630
AQUA009805 Anopheles quadriannulatus AQUA009805 N 0.662
ASIS023527 Anopheles sinensis ASIS023527 N 0.634
ASTEI04275 Anopheles stephensi ASTEI04275 N 0.662
A_06553 Schistosoma haematobium A_06553 N 0.460
ACAC_0000409101 Angiostrongylus cantonensis ACAC_0000409101 N 0.602
ACOC_0001323101 Angiostrongylus costaricensis ACOC_0001323101 N 0.602
ALUE_0001851001 Ascaris lumbricoides ALUE_0001851001 N 0.596
ANCCAN_29654 Ancylostoma caninum ANCCAN_29654 N 0.602
ANCCEY_08672 Ancylostoma ceylanicum ANCCEY_08672 N 0.602
ASU_10445 Ascaris suum ASU_10445 N 0.596
D917_07703 Trichinella nativa D917_07703 N 0.456
D918_07944 Trichuris suis D918_07944 N 0.435
DICVIV_03175 Dictyocaulus viviparus DICVIV_03175 N 0.602
DILT_0001250601 Diphyllobothrium latum DILT_0001250601 N 0.552
ECPE_0001800901 Echinostoma caproni ECPE_0001800901 N 0.488
GPUH_0000676401 Gongylonema pulchrum GPUH_0000676401 N 0.596
HCOI00594600 Haemonchus contortus HCOI00594600 N 0.602
HPBE_0001252601 Heligmosomoides bakeri HPBE_0001252601 N 0.602
HPLM_0000348901 Haemonchus placei HPLM_0000348901 N 0.602
maker-nMf.1.1.scaf18285-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf18285-snap-gene-0.4 N 0.589
MhA1_Contig1250.frz3.gene10 Meloidogyne hapla MhA1_Contig1250.frz3.gene10 N 0.589
NBR_0000605501 Nippostrongylus brasiliensis NBR_0000605501 N 0.602
NECAME_12352 Necator americanus NECAME_12352 N 0.591
OESDEN_05486 Oesophagostomum dentatum OESDEN_05486 N 0.591
PEQ_0000413701 Parascaris equorum PEQ_0000413701 N 0.596
SBAD_0000307901 Soboliphyme baturini SBAD_0000307901 N 0.565
SMRZ_0002114501 Schistosoma margrebowiei SMRZ_0002114501 N 0.460
T265_00523 Opisthorchis viverrini T265_00523 N 0.453
TCLT_0001081001 Thelazia callipaeda TCLT_0001081001 N 0.596
TELCIR_11967 Teladorsagia circumcincta TELCIR_11967 N 0.602
TMUE_s0148001000 Trichuris muris TMUE_s0148001000 N 0.425
TRE_0001918901 Trichobilharzia regenti TRE_0001918901 N 0.480
TTRE_0000309701 Trichuris trichiura TTRE_0000309701 N 0.481