gw.110.115.1 (Branchiostoma floridae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 gw.110.115.1 T334219_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
gw.110.115.1 Sox 1 54

Links

Other Sox family TFs
Other Branchiostoma floridae TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HNF1A Homo sapiens ENSG00000135100 D 0.000
HMBOX1 Homo sapiens ENSG00000147421 D 0.000
HNF1B Homo sapiens ENSG00000275410 D 0.000
Hnf1b Mus musculus ENSMUSG00000020679 D 0.000
Hmbox1 Mus musculus ENSMUSG00000021972 D 0.000
Hnf1a Mus musculus ENSMUSG00000029556 D 0.000
CapteG124171 Capitella teleta CapteG124171 I 0.000
HNF1B Anolis carolinensis ENSACAG00000006458 I 0.000
HMBOX1 Anolis carolinensis ENSACAG00000010160 I 0.000
ENSAMEG00000008387 Ailuropoda melanoleuca ENSAMEG00000008387 I 0.000
ENSAMEG00000013125 Ailuropoda melanoleuca ENSAMEG00000013125 I 0.000
ENSAMEG00000016028 Ailuropoda melanoleuca ENSAMEG00000016028 I 0.000
ENSAMXG00000004039 Astyanax mexicanus ENSAMXG00000004039 I 0.000
ENSAMXG00000005661 Astyanax mexicanus ENSAMXG00000005661 I 0.000
ENSAMXG00000011241 Astyanax mexicanus ENSAMXG00000011241 I 0.000
ENSAMXG00000018539 Astyanax mexicanus ENSAMXG00000018539 I 0.000
ENSAMXG00000024376 Astyanax mexicanus ENSAMXG00000024376 I 0.000
ENSAPLG00000002580 Anas platyrhynchos ENSAPLG00000002580 I 0.000
ENSAPLG00000006003 Anas platyrhynchos ENSAPLG00000006003 I 0.000
HNF1B Bos taurus ENSBTAG00000004710 I 0.000
HMBOX1 Bos taurus ENSBTAG00000010819 I 0.000
HNF1A Bos taurus ENSBTAG00000021795 I 0.000
HMBOX1 Canis familiaris ENSCAFG00000008237 I 0.000
HNF1A Canis familiaris ENSCAFG00000010502 I 0.000
HNF1B Canis familiaris ENSCAFG00000018150 I 0.000
HMBOX1 Choloepus hoffmanni ENSCHOG00000005538 I 0.000
HNF1B Choloepus hoffmanni ENSCHOG00000006010 I 0.000
ENSCING00000003920 Ciona intestinalis ENSCING00000003920 I 0.000
ENSCING00000007645 Ciona intestinalis ENSCING00000007645 I 0.000
HNF1B Callithrix jacchus ENSCJAG00000015174 I 0.000
HMBOX1 Callithrix jacchus ENSCJAG00000015654 I 0.000
HNF1B Cavia porcellus ENSCPOG00000001234 I 0.000
HNF1A Cavia porcellus ENSCPOG00000007242 I 0.000
HMBOX1 Cavia porcellus ENSCPOG00000011124 I 0.000
ENSCSAG00000002227 Chlorocebus sabaeus ENSCSAG00000002227 I 0.000
ENSCSAG00000006125 Chlorocebus sabaeus ENSCSAG00000006125 I 0.000
ENSCSAG00000015894 Chlorocebus sabaeus ENSCSAG00000015894 I 0.000
ENSCSAVG00000002486 Ciona savignyi ENSCSAVG00000002486 I 0.000
ENSCSAVG00000009827 Ciona savignyi ENSCSAVG00000009827 I 0.000
hnf1ba Danio rerio ENSDARG00000006615 I 0.000
hnf1a Danio rerio ENSDARG00000009470 I 0.000
hmbox1b Danio rerio ENSDARG00000018913 I 0.000
hnf1bb Danio rerio ENSDARG00000022295 I 0.000
hmbox1a Danio rerio ENSDARG00000027082 I 0.000
zgc:91944 Danio rerio ENSDARG00000035887 I 0.000
HNF1A Dasypus novemcinctus ENSDNOG00000000374 I 0.000
HNF1B Dasypus novemcinctus ENSDNOG00000001586 I 0.000
HMBOX1 Dasypus novemcinctus ENSDNOG00000031840 I 0.000
Hnf1a Dipodomys ordii ENSDORG00000007676 I 0.000
Hnf1b Dipodomys ordii ENSDORG00000009669 I 0.000
HMBOX1 Equus caballus ENSECAG00000008240 I 0.000
HNF1B Equus caballus ENSECAG00000015854 I 0.000
HNF1A Equus caballus ENSECAG00000019954 I 0.000
HNF1B Erinaceus europaeus ENSEEUG00000004998 I 0.000
ENSFALG00000005101 Ficedula albicollis ENSFALG00000005101 I 0.000
ENSFALG00000007499 Ficedula albicollis ENSFALG00000007499 I 0.000
ENSFALG00000010859 Ficedula albicollis ENSFALG00000010859 I 0.000
HNF1B Felis catus ENSFCAG00000000241 I 0.000
HNF1A Felis catus ENSFCAG00000009638 I 0.000
HMBOX1 Felis catus ENSFCAG00000022672 I 0.000
hmbox1b Gasterosteus aculeatus ENSGACG00000004391 I 0.000
zgc:91944 Gasterosteus aculeatus ENSGACG00000009223 I 0.000
hnf1ba Gasterosteus aculeatus ENSGACG00000011101 I 0.000
hnf1a Gasterosteus aculeatus ENSGACG00000012691 I 0.000
hmbox1a Gasterosteus aculeatus ENSGACG00000014814 I 0.000
HNF1B Gallus gallus ENSGALG00000005504 I 0.000
HNF1A Gallus gallus ENSGALG00000006968 I 0.000
HMBOX1 Gallus gallus ENSGALG00000016633 I 0.000
HMBOX1 Gorilla gorilla ENSGGOG00000000860 I 0.000
HNF1A Gorilla gorilla ENSGGOG00000004329 I 0.000
HNF1B Gorilla gorilla ENSGGOG00000006322 I 0.000
ENSGMOG00000001038 Gadus morhua ENSGMOG00000001038 I 0.000
ENSGMOG00000002742 Gadus morhua ENSGMOG00000002742 I 0.000
ENSGMOG00000004622 Gadus morhua ENSGMOG00000004622 I 0.000
ENSGMOG00000006872 Gadus morhua ENSGMOG00000006872 I 0.000
ENSGMOG00000016065 Gadus morhua ENSGMOG00000016065 I 0.000
ENSLACG00000011304 Latimeria chalumnae ENSLACG00000011304 I 0.000
ENSLACG00000012983 Latimeria chalumnae ENSLACG00000012983 I 0.000
ENSLACG00000017915 Latimeria chalumnae ENSLACG00000017915 I 0.000
HNF1B Loxodonta africana ENSLAFG00000002573 I 0.000
HNF1A Loxodonta africana ENSLAFG00000017872 I 0.000
HMBOX1 Loxodonta africana ENSLAFG00000032318 I 0.000
ENSLOCG00000001916 Lepisosteus oculatus ENSLOCG00000001916 I 0.000
ENSLOCG00000002874 Lepisosteus oculatus ENSLOCG00000002874 I 0.000
ENSLOCG00000005942 Lepisosteus oculatus ENSLOCG00000005942 I 0.000
ENSLOCG00000015994 Lepisosteus oculatus ENSLOCG00000015994 I 0.000
ENSMEUG00000004163 Macropus eugenii ENSMEUG00000004163 I 0.000
ENSMEUG00000015023 Macropus eugenii ENSMEUG00000015023 I 0.000
HNF1B Meleagris gallopavo ENSMGAG00000008126 I 0.000
HNF1A Meleagris gallopavo ENSMGAG00000008538 I 0.000
ENSMICG00000004221 Microcebus murinus ENSMICG00000004221 I 0.000
HMBOX1 Myotis lucifugus ENSMLUG00000007478 I 0.000
HNF1A Myotis lucifugus ENSMLUG00000009109 I 0.000
HNF1B Myotis lucifugus ENSMLUG00000012260 I 0.000
HNF1B Macaca mulatta ENSMMUG00000003431 I 0.000
HMBOX1 Macaca mulatta ENSMMUG00000014981 I 0.000
HNF1A Monodelphis domestica ENSMODG00000002966 I 0.000
HMBOX1 Monodelphis domestica ENSMODG00000008788 I 0.000
HNF1B Monodelphis domestica ENSMODG00000019108 I 0.000
ENSMPUG00000001070 Mustela putorius furo ENSMPUG00000001070 I 0.000
ENSMPUG00000003290 Mustela putorius furo ENSMPUG00000003290 I 0.000
ENSMPUG00000015004 Mustela putorius furo ENSMPUG00000015004 I 0.000
ENSNLEG00000002919 Nomascus leucogenys ENSNLEG00000002919 I 0.000
ENSNLEG00000016701 Nomascus leucogenys ENSNLEG00000016701 I 0.000
HNF1A Ornithorhynchus anatinus ENSOANG00000014646 I 0.000
ENSOARG00000003338 Ovis aries ENSOARG00000003338 I 0.000
ENSOARG00000013764 Ovis aries ENSOARG00000013764 I 0.000
ENSOARG00000015036 Ovis aries ENSOARG00000015036 I 0.000
HNF1B Oryctolagus cuniculus ENSOCUG00000003682 I 0.000
HMBOX1 Oryctolagus cuniculus ENSOCUG00000017211 I 0.000
HNF1B Otolemur garnettii ENSOGAG00000000869 I 0.000
HMBOX1 Otolemur garnettii ENSOGAG00000001381 I 0.000
HNF1A Otolemur garnettii ENSOGAG00000009071 I 0.000
ENSONIG00000001328 Oreochromis niloticus ENSONIG00000001328 I 0.000
ENSONIG00000003040 Oreochromis niloticus ENSONIG00000003040 I 0.000
ENSONIG00000007704 Oreochromis niloticus ENSONIG00000007704 I 0.000
ENSONIG00000011178 Oreochromis niloticus ENSONIG00000011178 I 0.000
ENSONIG00000013161 Oreochromis niloticus ENSONIG00000013161 I 0.000
HNF1A Ochotona princeps ENSOPRG00000001671 I 0.000
HNF1B Ochotona princeps ENSOPRG00000003933 I 0.000
hnf1ba Oryzias latipes ENSORLG00000004564 I 0.000
hmbox1a Oryzias latipes ENSORLG00000014467 I 0.000
hmbox1b Oryzias latipes ENSORLG00000016242 I 0.000
ENSORLG00000018971 Oryzias latipes ENSORLG00000018971 I 0.000
zgc:91944 Oryzias latipes ENSORLG00000020883 I 0.000
ENSPANG00000008728 Papio anubis ENSPANG00000008728 I 0.000
ENSPANG00000014537 Papio anubis ENSPANG00000014537 I 0.000
ENSPANG00000022102 Papio anubis ENSPANG00000022102 I 0.000
HNF1B Procavia capensis ENSPCAG00000008147 I 0.000
HMBOX1 Procavia capensis ENSPCAG00000012005 I 0.000
ENSPFOG00000000843 Poecilia formosa ENSPFOG00000000843 I 0.000
ENSPFOG00000009496 Poecilia formosa ENSPFOG00000009496 I 0.000
ENSPFOG00000012263 Poecilia formosa ENSPFOG00000012263 I 0.000
ENSPFOG00000013053 Poecilia formosa ENSPFOG00000013053 I 0.000
ENSPFOG00000017886 Poecilia formosa ENSPFOG00000017886 I 0.000
ENSPPYG00000008222 Pongo abelii ENSPPYG00000008222 I 0.000
ENSPPYG00000018480 Pongo abelii ENSPPYG00000018480 I 0.000
ENSPSIG00000009511 Pelodiscus sinensis ENSPSIG00000009511 I 0.000
ENSPSIG00000013055 Pelodiscus sinensis ENSPSIG00000013055 I 0.000
ENSPSIG00000016826 Pelodiscus sinensis ENSPSIG00000016826 I 0.000
HNF1A Pan troglodytes ENSPTRG00000005551 I 0.000
HNF1B Pan troglodytes ENSPTRG00000009059 I 0.000
HMBOX1 Pan troglodytes ENSPTRG00000020127 I 0.000
HNF1A Pteropus vampyrus ENSPVAG00000008044 I 0.000
HNF1B Pteropus vampyrus ENSPVAG00000010466 I 0.000
Hnf1a Rattus norvegicus ENSRNOG00000001183 I 0.000
Hnf1b Rattus norvegicus ENSRNOG00000002598 I 0.000
Hmbox1 Rattus norvegicus ENSRNOG00000013326 I 0.000
HNF1B Sorex araneus ENSSARG00000007152 I 0.000
ENSSHAG00000005052 Sarcophilus harrisii ENSSHAG00000005052 I 0.000
ENSSHAG00000016211 Sarcophilus harrisii ENSSHAG00000016211 I 0.000
HMBOX1 Sus scrofa ENSSSCG00000009682 I 0.000
HNF1A Sus scrofa ENSSSCG00000009919 I 0.000
HNF1B Sus scrofa ENSSSCG00000022417 I 0.000
ENSSTOG00000004719 Ictidomys tridecemlineatus ENSSTOG00000004719 I 0.000
ENSSTOG00000004762 Ictidomys tridecemlineatus ENSSTOG00000004762 I 0.000
ENSSTOG00000012440 Ictidomys tridecemlineatus ENSSTOG00000012440 I 0.000
HMBOX1 Tupaia belangeri ENSTBEG00000016300 I 0.000
HNF1A Taeniopygia guttata ENSTGUG00000009673 I 0.000
HMBOX1 Taeniopygia guttata ENSTGUG00000013324 I 0.000
hnf1a Tetraodon nigroviridis ENSTNIG00000011468 I 0.000
hmbox1a Tetraodon nigroviridis ENSTNIG00000011904 I 0.000
zgc:91944 Tetraodon nigroviridis ENSTNIG00000014025 I 0.000
hnf1ba Tetraodon nigroviridis ENSTNIG00000016225 I 0.000
hnf1ba Takifugu rubripes ENSTRUG00000003809 I 0.000
hmbox1b Takifugu rubripes ENSTRUG00000004378 I 0.000
hmbox1a Takifugu rubripes ENSTRUG00000006366 I 0.000
zgc:91944 Takifugu rubripes ENSTRUG00000012550 I 0.000
hnf1a Takifugu rubripes ENSTRUG00000016222 I 0.000
ENSTSYG00000001109 Tarsius syrichta ENSTSYG00000001109 I 0.000
ENSTSYG00000010701 Tarsius syrichta ENSTSYG00000010701 I 0.000
HMBOX1 Tursiops truncatus ENSTTRG00000015467 I 0.000
HNF1B Tursiops truncatus ENSTTRG00000015910 I 0.000
ENSXMAG00000001795 Xiphophorus maculatus ENSXMAG00000001795 I 0.000
ENSXMAG00000003472 Xiphophorus maculatus ENSXMAG00000003472 I 0.000
ENSXMAG00000005730 Xiphophorus maculatus ENSXMAG00000005730 I 0.000
ENSXMAG00000011675 Xiphophorus maculatus ENSXMAG00000011675 I 0.000
ENSXMAG00000011775 Xiphophorus maculatus ENSXMAG00000011775 I 0.000
HelroG166133 Helobdella robusta HelroG166133 I 0.000
Q4S8E1_TETNG Tetraodon nigroviridis Q4S8E1_TETNG I 0.000
SPU_002791 Strongylocentrotus purpuratus SPU_002791 I 0.000
SPU_010305 Strongylocentrotus purpuratus SPU_010305 I 0.000
SPU_022737 Strongylocentrotus purpuratus SPU_022737 I 0.000
TriadG28952 Trichoplax adhaerens TriadG28952 I 0.000
Aan_R008292 Calypte anna Aan_R008292 I 0.000
Aan_R010756 Calypte anna Aan_R010756 I 0.000
Aan_R014136 Calypte anna Aan_R014136 I 0.000
Afo_R009049 Aptenodytes forsteri Afo_R009049 I 0.000
Afo_R011837 Aptenodytes forsteri Afo_R011837 I 0.000
Afo_R013605 Aptenodytes forsteri Afo_R013605 I 0.000
Alligator_sinensis_CCG002074.1 Alligator sinensis Alligator_sinensis_CCG002074.1 I 0.000
Alligator_sinensis_CCG014136.1 Alligator sinensis Alligator_sinensis_CCG014136.1 I 0.000
Brh_R011090 Buceros rhinoceros Brh_R011090 I 0.000
Brh_R012838 Buceros rhinoceros Brh_R012838 I 0.000
Cmyd_10005161 Chelonia mydas Cmyd_10005161 I 0.000
Cmyd_10005786 Chelonia mydas Cmyd_10005786 I 0.000
Cmyd_10016186 Chelonia mydas Cmyd_10016186 I 0.000
ENSBTAP00000006184-D1 Bos grunniens ENSBTAP00000006184-D1 I 0.000
ENSBTAP00000029049-D1 Bos grunniens ENSBTAP00000029049-D1 I 0.000
ENSP00000225893 Macaca fascicularis ENSP00000225893 I 0.000
ENSP00000257555 Macaca fascicularis ENSP00000257555 I 0.000
ENSP00000401769-D1 Bos grunniens ENSP00000401769-D1 I 0.000
ENSP00000401769 Macaca fascicularis ENSP00000401769 I 0.000
Gfo_R008926 Geospiza fortis Gfo_R008926 I 0.000
Gfo_R010877 Geospiza fortis Gfo_R010877 I 0.000
Gfo_R012758 Geospiza fortis Gfo_R012758 I 0.000
Myotis_brandtii_HMBOX1_10012332 Myotis brandtii Myotis_brandtii_HMBOX1_10012332 I 0.000
Myotis_brandtii_HNF1A_10028127 Myotis brandtii Myotis_brandtii_HNF1A_10028127 I 0.000
Myotis_brandtii_HNF1B_10031016 Myotis brandtii Myotis_brandtii_HNF1B_10031016 I 0.000
Ogr03456 Ophisaurus gracilis Ogr03456 I 0.000
Pvit_03697 Pogona vitticeps Pvit_03697 I 0.000
Pvit_13545 Pogona vitticeps Pvit_13545 I 0.000
Tal_R010417 Tyto alba Tal_R010417 I 0.000
fgenesh2_kg.scaffold_157000001 Branchiostoma floridae fgenesh2_kg.scaffold_157000001 I 0.000
fgenesh2_kg.scaffold_214000001 Branchiostoma floridae fgenesh2_kg.scaffold_214000001 I 0.000
fgenesh2_pg.scaffold_505000025 Branchiostoma floridae fgenesh2_pg.scaffold_505000025 I 0.000
Sakowv30011728m.g Saccoglossus kowalevskii Sakowv30011728m.g I 0.000
SNAPOd2T00002150001 Oikopleura dioica SNAPOd2T00002150001 I 0.000
hnf1b.S Xenopus laevis XB-GENE-17330995 I 0.000
hnf1a Xenopus tropicalis XB-GENE-484117 I 0.000
hnf1b Xenopus tropicalis XB-GENE-485652 I 0.000
hnf1b.L Xenopus laevis XB-GENE-485656 I 0.000
hmbox1.S Xenopus laevis XB-GENE-6078482 I 0.000
hnf1a.S Xenopus laevis XB-GENE-865049 I 0.000
XP_002939680 Xenopus tropicalis XP_002939680 I 0.000
genemark-nMf.1.1.scaf05885-processed-gene-0.2 Meloidogyne floridensis genemark-nMf.1.1.scaf05885-processed-gene-0.2 I 0.000
maker-nMf.1.1.scaf05852-augustus-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf05852-augustus-gene-0.4 I 0.000
EFV59137 Trichinella spiralis EFV59137 N 0.000
Hmbox1 Dipodomys ordii ENSDORG00000015971 N 0.000
ENSLACG00000003225 Latimeria chalumnae ENSLACG00000003225 N 0.000
HMBOX1 Microcebus murinus ENSMICG00000010422 N 0.000
HMBOX1 Ochotona princeps ENSOPRG00000013613 N 0.000
HMBOX1 Sorex araneus ENSSARG00000009365 N 0.000
SPU_008196 Strongylocentrotus purpuratus SPU_008196 N 0.000
Ogr07758 Ophisaurus gracilis Ogr07758 N 0.000
D918_03762 Trichuris suis D918_03762 N 0.000
TTRE_0000607501 Trichuris trichiura TTRE_0000607501 N 0.000