Lus10001909.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10001909.g T334557_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.537 0.681
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.537 0.681
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10001909 Sox 174 241
Lus10001909 Sox 292 358
Lus10001909 Sox 420 488

Links

Other Sox family TFs
Other Linum usitatissimum TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SMAR001262 Strigamia maritima SMAR001262 I 0.000
PPAI005590 Phlebotomus papatasi PPAI005590 I 0.000
MDOA009261 Musca domestica MDOA009261 I 0.000
LLOJ006683 Lutzomyia longipalpis LLOJ006683 I 0.000
AALB001524 Anopheles albimanus AALB001524 I 0.000
LCUP002256 Lucilia cuprina LCUP002256 I 0.000
Cflo_09641--XP_393231.3_APIME Camponotus floridanus Cflo_09641--XP_393231.3_APIME I 0.000
CpipJ_CPIJ004862 Culex pipiens CpipJ_CPIJ004862 I 0.000
NEMVEDRAFT_v1g38726 Nematostella vectensis NEMVEDRAFT_v1g38726 I 0.000
HMEL017165 Heliconius melpomene HMEL017165 I 0.000
GB44791 Apis mellifera GB44791 I 0.000
GE16012 Drosophila yakuba FBgn0233564 I 0.000
GK16252 Drosophila willistoni FBgn0218254 I 0.000
GJ18431 Drosophila virilis FBgn0205590 I 0.000
GM22518 Drosophila sechellia FBgn0177388 I 0.000
AAEL014286 Aedes aegypti AAEL014286 I 0.000
ADAC005010 Anopheles darlingi ADAC005010 I 0.000
CPIJ004862 Culex quinquefasciatus CPIJ004862 I 0.000
GF19984 Drosophila ananassae FBgn0096991 I 0.000
GG19364 Drosophila erecta FBgn0111568 I 0.000
GD24674 Drosophila simulans FBgn0196001 I 0.000
GL24710 Drosophila persimilis FBgn0162298 I 0.000
GH11855 Drosophila grimshawi FBgn0119334 I 0.000
GI14170 Drosophila mojavensis FBgn0136923 I 0.000
ACUA005970 Anopheles culicifacies ACUA005970 N 0.000
ACYPI005393 Acyrthosiphon pisum ACYPI005393 N 0.000
ASTEI09594 Anopheles stephensi ASTEI09594 N 0.000
ASIS021966 Anopheles sinensis ASIS021966 N 0.000
AQUA000993 Anopheles quadriannulatus AQUA000993 N 0.000
AMIN006115 Anopheles minimus AMIN006115 N 0.000
AMEM015420 Anopheles merus AMEM015420 N 0.000
AMEC012340 Anopheles melas AMEC012340 N 0.000
AMEC009973 Anopheles melas AMEC009973 N 0.000
AFUN003983 Anopheles funestus AFUN003983 N 0.000
AFAF000916 Anopheles farauti AFAF000916 N 0.000
AEPI008902 Anopheles epiroticus AEPI008902 N 0.000
ADIR011315 Anopheles dirus ADIR011315 N 0.000
L798_09102 Zootermopsis nevadensis L798_09102 N 0.000
ACOM030425 Anopheles coluzzii ACOM030425 N 0.000
AATE004999 Anopheles atroparvus AATE004999 N 0.000
AARA004970 Anopheles arabiensis AARA004970 N 0.000
AGAP008160 Anopheles gambiae AGAP008160 N 0.000
BGIBMGA013826 Bombyx mori BGIBMGA013826 N 0.000
CLEC001097 Cimex lectularius CLEC001097 N 0.000
YQE_02334 Dendroctonus ponderosae YQE_02334 N 0.000
TC030738 Tribolium castaneum TC030738 N 0.000
PHUM518530 Pediculus humanus PHUM518530 N 0.000
NV17529 Nasonia vitripennis NV17529 N 0.000
KGM_15963 Danaus plexippus KGM_15963 N 0.000