Pavir.Ca01033 (Panicum virgatum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pavir.Ca01033 T334664_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca01033.1.p Sox 238 306
Pavir.Ca01033.2.p Sox 237 305

Links

Other Sox family TFs
Other Panicum virgatum TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB83 Arabidopsis thaliana AT3G08500 D
ATY53 Arabidopsis thaliana AT3G12720 D
AMTR_s00032p00221670 Amborella trichopoda AMTR_s00032p00221670 I
MYB26 Arabidopsis thaliana AT3G13890 I
BGIOSGA004306 Oryza indica BGIOSGA004306 I
BGIOSGA024270 Oryza indica BGIOSGA024270 I
BGIOSGA027659 Oryza indica BGIOSGA027659 I
BGIOSGA036092 Oryza indica BGIOSGA036092 I
Bo1g134790 Brassica oleracea Bo1g134790 I
Bo1g138990 Brassica oleracea Bo1g138990 I
Bo2g010970 Brassica oleracea Bo2g010970 I
Bo5g133210 Brassica oleracea Bo5g133210 I
Bo5g139830 Brassica oleracea Bo5g139830 I
Bra001284 Brassica rapa Bra001284 I
Bra021515 Brassica rapa Bra021515 I
Bra029696 Brassica rapa Bra029696 I
Bra034738 Brassica rapa Bra034738 I
Bra039339 Brassica rapa Bra039339 I
BRADI1G26920 Brachypodium distachyon BRADI1G26920 I
BRADI2G47887 Brachypodium distachyon BRADI2G47887 I
BRADI3G17165 Brachypodium distachyon BRADI3G17165 I
BRADI4G06317 Brachypodium distachyon BRADI4G06317 I
F775_00835 Aegilops tauschii F775_00835 I
F775_06561 Aegilops tauschii F775_06561 I
F775_28951 Aegilops tauschii F775_28951 I
MYB26 Arabidopsis lyrata fgenesh2_kg.3__1496__AT3G13890.1 I
MYB83 Arabidopsis lyrata fgenesh2_kg.3__848__AT3G08500.1 I
GLYMA07G01050 Glycine max GLYMA07G01050 I
GLYMA08G17371 Glycine max GLYMA08G17371 I
GLYMA08G20440 Glycine max GLYMA08G20440 I
GLYMA13G07020 Glycine max GLYMA13G07020 I
GLYMA13G27310 Glycine max GLYMA13G27310 I
GLYMA13G42431 Glycine max GLYMA13G42431 I
GLYMA15G02955 Glycine max GLYMA15G02955 I
GLYMA19G05080 Glycine max GLYMA19G05080 I
GRMZM2G052606 Zea mays GRMZM2G052606 I
GRMZM2G172327 Zea mays GRMZM2G172327 I
GRMZM2G325907 Zea mays GRMZM2G325907 I
GSMUA_Achr10G08070_001 Musa acuminata GSMUA_Achr10G08070_001 I
GSMUA_Achr6G35800_001 Musa acuminata GSMUA_Achr6G35800_001 I
GSMUA_Achr8G03510_001 Musa acuminata GSMUA_Achr8G03510_001 I
GSMUA_Achr9G11190_001 Musa acuminata GSMUA_Achr9G11190_001 I
GSMUA_Achr9G25110_001 Musa acuminata GSMUA_Achr9G25110_001 I
LPERR01G24370 Leersia perrieri LPERR01G24370 I
LPERR07G12760 Leersia perrieri LPERR07G12760 I
LPERR08G03020 Leersia perrieri LPERR08G03020 I
MLOC_16981 Hordeum vulgare MLOC_16981 I
MLOC_56753 Hordeum vulgare MLOC_56753 I
MLOC_66577 Hordeum vulgare MLOC_66577 I
MTR_2g064160 Medicago truncatula MTR_2g064160 I
MTR_2g099740 Medicago truncatula MTR_2g099740 I
MTR_3g028740 Medicago truncatula MTR_3g028740 I
MTR_8g017340 Medicago truncatula MTR_8g017340 I
MTR_8g017350 Medicago truncatula MTR_8g017350 I
MTR_8g017390 Medicago truncatula MTR_8g017390 I
MTR_8g017440 Medicago truncatula MTR_8g017440 I
MTR_8g017500 Medicago truncatula MTR_8g017500 I
MTR_8g017540 Medicago truncatula MTR_8g017540 I
OB01G37410 Oryza brachyantha OB01G37410 I
OB08G13090 Oryza brachyantha OB08G13090 I
OBART07G15150 Oryza barthii OBART07G15150 I
OBART08G03020 Oryza barthii OBART08G03020 I
OBART12G13720 Oryza barthii OBART12G13720 I
OGLUM08G03030 Oryza glumaepatula OGLUM08G03030 I
OGLUM12G15400 Oryza glumaepatula OGLUM12G15400 I
OLONG_008660 Oryza longistaminata OLONG_008660 I
OMERI07G11910 Oryza meridionalis OMERI07G11910 I
OMERI08G02950 Oryza meridionalis OMERI08G02950 I
OMERI12G09660 Oryza meridionalis OMERI12G09660 I
ONIVA05G29400 Oryza nivara ONIVA05G29400 I
ONIVA06G02400 Oryza nivara ONIVA06G02400 I
OPUNC01G28160 Oryza punctata OPUNC01G28160 I
OPUNC07G13970 Oryza punctata OPUNC07G13970 I
OPUNC08G02760 Oryza punctata OPUNC08G02760 I
OPUNC12G12380 Oryza punctata OPUNC12G12380 I
ORGLA01G0234600 Oryza glaberrima ORGLA01G0234600 I
ORGLA07G0124200 Oryza glaberrima ORGLA07G0124200 I
ORGLA08G0023900 Oryza glaberrima ORGLA08G0023900 I
ORGLA12G0120900 Oryza glaberrima ORGLA12G0120900 I
ORUFI07G15620 Oryza rufipogon ORUFI07G15620 I
ORUFI08G03380 Oryza rufipogon ORUFI08G03380 I
ORUFI12G15040 Oryza rufipogon ORUFI12G15040 I
OS01G0709000 Oryza sativa OS01G0709000 I
OS07G0497500 Oryza sativa OS07G0497500 I
OS08G0151300 Oryza sativa OS08G0151300 I
PGSC0003DMG400006868 Solanum tuberosum PGSC0003DMG400006868 I
PGSC0003DMG400007325 Solanum tuberosum PGSC0003DMG400007325 I
PGSC0003DMG400007360 Solanum tuberosum PGSC0003DMG400007360 I
PGSC0003DMG400037038 Solanum tuberosum PGSC0003DMG400037038 I
POPTR_0001s12240 Populus trichocarpa POPTR_0001s12240 I
MYB26 Populus trichocarpa POPTR_0001s20370 I
POPTR_0001s27430 Populus trichocarpa POPTR_0001s27430 I
POPTR_0003s15440 Populus trichocarpa POPTR_0003s15440 I
POPTR_0008s08110 Populus trichocarpa POPTR_0008s08110 I
POPTR_0009s06630 Populus trichocarpa POPTR_0009s06630 I
POPTR_0010s18170 Populus trichocarpa POPTR_0010s18170 I
PRUPE_ppa015032mg Prunus persica PRUPE_ppa015032mg I
PRUPE_ppa016923mg Prunus persica PRUPE_ppa016923mg I
PRUPE_ppa022859mg Prunus persica PRUPE_ppa022859mg I
PRUPE_ppa026618mg Prunus persica PRUPE_ppa026618mg I
Sb02g033830 Sorghum bicolor Sb02g033830 I
Sb03g032600 Sorghum bicolor Sb03g032600 I
Sb07g003320 Sorghum bicolor Sb07g003320 I
Sb08g016620 Sorghum bicolor Sb08g016620 I
ATY53 Arabidopsis lyrata scaffold_301452.1 I
Si002319m.g Setaria italica Si002319m.g I
Si024786m.g Setaria italica Si024786m.g I
Si030152m.g Setaria italica Si030152m.g I
Solyc02g082040.2 Solanum lycopersicum Solyc02g082040.2 I
Solyc03g121740.1 Solanum lycopersicum Solyc03g121740.1 I
Solyc10g005240.2 Solanum lycopersicum Solyc10g005240.2 I
Solyc11g065840.1 Solanum lycopersicum Solyc11g065840.1 I
TCM_005885 Theobroma cacao TCM_005885 I
TCM_005977 Theobroma cacao TCM_005977 I
TCM_029065 Theobroma cacao TCM_029065 I
TCM_033645 Theobroma cacao TCM_033645 I
Traes_2AS_40FA27AE7 Triticum aestivum Traes_2AS_40FA27AE7 I
Traes_5BS_2CB91C54A Triticum aestivum Traes_5BS_2CB91C54A I
Traes_5DS_AACA2EBA3 Triticum aestivum Traes_5DS_AACA2EBA3 I
Traes_7AL_04D939077 Triticum aestivum Traes_7AL_04D939077 I
Traes_7DL_5BD0D4BD1 Triticum aestivum Traes_7DL_5BD0D4BD1 I
TRIUR3_24104 Triticum urartu TRIUR3_24104 I
TRIUR3_26358 Triticum urartu TRIUR3_26358 I
TRIUR3_33254 Triticum urartu TRIUR3_33254 I
VIT_01s0010g00410 Vitis vinifera VIT_01s0010g00410 I
MYB26 Vitis vinifera VIT_09s0002g01670 I
ATY53 Vitis vinifera VIT_19s0085g00940 I
Ca_02730 Cicer arietinum Ca_02730 I
Ca_10069 Cicer arietinum Ca_10069 I
Cla012793 Citrullus lanatus Cla012793 I
Pm010847 Prunus mume Pm010847 I
Pm010927 Prunus mume Pm010927 I
Pm013322 Prunus mume Pm013322 I
Pm016295 Prunus mume Pm016295 I
27956.m000359 Ricinus communis 27956.m000359 I
30125.m001257 Ricinus communis 30125.m001257 I
cassava11527.m1 Manihot esculenta cassava11527.m1 I
cassava176.valid.m1 Manihot esculenta cassava176.valid.m1 I
cassava26068.m1 Manihot esculenta cassava26068.m1 I
cassava32908.m1 Manihot esculenta cassava32908.m1 I
cassava33147.m1 Manihot esculenta cassava33147.m1 I
cassava34928.m1 Manihot esculenta cassava34928.m1 I
cassava39861.m1 Manihot esculenta cassava39861.m1 I
cassava44228.m1 Manihot esculenta cassava44228.m1 I
Cucsa.340960 Cucumis sativus Cucsa.340960 I
Aquca_020_00444 Aquilegia coerulea Aquca_020_00444 I
Aquca_030_00294 Aquilegia coerulea Aquca_030_00294 I
Bostr.22252s0219 Boechera stricta Bostr.22252s0219 I
Bostr.28625s0318 Boechera stricta Bostr.28625s0318 I
Bostr.3640s0047 Boechera stricta Bostr.3640s0047 I
Cagra.0736s0026 Capsella grandiflora Cagra.0736s0026 I
Cagra.2991s0041 Capsella grandiflora Cagra.2991s0041 I
Cagra.5641s0037 Capsella grandiflora Cagra.5641s0037 I
Carubv10014093m.g Capsella rubella Carubv10014093m.g I
Carubv10015099m.g Capsella rubella Carubv10015099m.g I
Carubv10015767m.g Capsella rubella Carubv10015767m.g I
Ciclev10006752m.g Citrus clementina Ciclev10006752m.g I
Ciclev10018009m.g Citrus clementina Ciclev10018009m.g I
Ciclev10027201m.g Citrus clementina Ciclev10027201m.g I
Ciclev10033941m.g Citrus clementina Ciclev10033941m.g I
Eucgr.E04323 Eucalyptus grandis Eucgr.E04323 I
Eucgr.F03143 Eucalyptus grandis Eucgr.F03143 I
Eucgr.G03385 Eucalyptus grandis Eucgr.G03385 I
evm.TU.supercontig_25.69 Carica papaya evm.TU.supercontig_25.69 I
gene06920-v1.0-hybrid Fragaria vesca gene06920-v1.0-hybrid I
gene19715-v1.0-hybrid Fragaria vesca gene19715-v1.0-hybrid I
gene19934-v1.0-hybrid Fragaria vesca gene19934-v1.0-hybrid I
Gorai.001G138800 Gossypium raimondii Gorai.001G138800 I
Gorai.004G172700 Gossypium raimondii Gorai.004G172700 I
Gorai.004G268300 Gossypium raimondii Gorai.004G268300 I
Gorai.009G142200 Gossypium raimondii Gorai.009G142200 I
Gorai.011G063900 Gossypium raimondii Gorai.011G063900 I
Gorai.013G251100 Gossypium raimondii Gorai.013G251100 I
Lus10015608.g Linum usitatissimum Lus10015608.g I
MDP0000148894 Malus domestica MDP0000148894 I
MDP0000157506 Malus domestica MDP0000157506 I
MDP0000226667 Malus domestica MDP0000226667 I
MDP0000736994 Malus domestica MDP0000736994 I
orange1.1g019619m.g Citrus sinensis orange1.1g019619m.g I
orange1.1g036087m.g Citrus sinensis orange1.1g036087m.g I
orange1.1g039070m.g Citrus sinensis orange1.1g039070m.g I
Pavir.Ba00923 Panicum virgatum Pavir.Ba00923 I
Pavir.Bb02786 Panicum virgatum Pavir.Bb02786 I
Pavir.Ca02370 Panicum virgatum Pavir.Ca02370 I
Pavir.Ea02594 Panicum virgatum Pavir.Ea02594 I
Pavir.Fb00364 Panicum virgatum Pavir.Fb00364 I
Pavir.J21520 Panicum virgatum Pavir.J21520 I
Pavir.J29561 Panicum virgatum Pavir.J29561 I
SapurV1A.0027s0350 Salix purpurea SapurV1A.0027s0350 I
SapurV1A.0093s0250 Salix purpurea SapurV1A.0093s0250 I
SapurV1A.0122s0490 Salix purpurea SapurV1A.0122s0490 I
SapurV1A.0149s0490 Salix purpurea SapurV1A.0149s0490 I
SapurV1A.0177s0130 Salix purpurea SapurV1A.0177s0130 I
SapurV1A.0236s0090 Salix purpurea SapurV1A.0236s0090 I
SapurV1A.0538s0150 Salix purpurea SapurV1A.0538s0150 I
SapurV1A.1869s0040 Salix purpurea SapurV1A.1869s0040 I
SapurV1A.4138s0010 Salix purpurea SapurV1A.4138s0010 I
Thhalv10021042m.g Eutrema salsugineum Thhalv10021042m.g I
Thhalv10021052m.g Eutrema salsugineum Thhalv10021052m.g I
Thhalv10022066m.g Eutrema salsugineum Thhalv10022066m.g I
PK22855.1 Cannabis sativa PK22855.1 I
chr3.CM0049.330.nc Lotus japonicus chr3.CM0049.330.nc I
LjT35F06.10.nd Lotus japonicus LjT35F06.10.nd I
PDK_20s1854611g001 Phoenix dactylifera PDK_20s1854611g001 I