Pavir.Ib04136 (Panicum virgatum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pavir.Ib04136 T334679_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.731 0.886
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.701 0.886
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.701 0.886
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.654 0.659
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.654 0.659
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.602 0.773
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib04136.1.p Sox 121 164
Pavir.Ib04136.2.p Sox 121 164
Pavir.Ib04136.3.p Sox 121 164
Pavir.Ib04136.4.p Sox 80 123
Pavir.Ib04136.5.p Sox 118 161
Pavir.Ib04136.6.p Sox 77 120

Links

Other Sox family TFs
Other Panicum virgatum TFs

533 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF296 Homo sapiens ENSG00000170684 D
ENSMMUG00000014156 Macaca mulatta ENSMMUG00000014156 I
Myotis_brandtii_ZNF296_10006030 Myotis brandtii Myotis_brandtii_ZNF296_10006030 I
ENSP00000302770 Macaca fascicularis ENSP00000302770 I
Zfp296 Rattus norvegicus ENSRNOG00000049605 I
ZNF296 Pteropus vampyrus ENSPVAG00000015955 I
ZNF296 Pan troglodytes ENSPTRG00000011136 I
ENSPPYG00000010105 Pongo abelii ENSPPYG00000010105 I
ENSPANG00000011600 Papio anubis ENSPANG00000011600 I
Zfp296 Mus musculus ENSMUSG00000011267 I
ZNF296 Callithrix jacchus ENSCJAG00000012912 I
ENSMLUG00000028903 Myotis lucifugus ENSMLUG00000028903 I
ENSMLUG00000002172 Myotis lucifugus ENSMLUG00000002172 I
ZNF296 Gorilla gorilla ENSGGOG00000003398 I
ZNF296 Erinaceus europaeus ENSEEUG00000015386 I
Zfp296 Dipodomys ordii ENSDORG00000003451 I
ZNF296 Dasypus novemcinctus ENSDNOG00000019934 I