LDEC000948 (Leptinotarsa decemlineata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 LDEC000948 T334881_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bbx
M03975_2.00 		Drosophila melanogaster
NAACAATDNCATTGTTN
NAACAATGNHATTGTTN		 SELEX
Nitta et al.(2015)
bbx_1 		0.569 0.623
Bbx
M00196_2.00 		Mus musculus
TTCATTGA
TCAATGAA		 PBM
Badis et al.(2009)
Bbx_3753 		0.516 0.652
BBX
M05763_2.00 		Homo sapiens
TGAWCDNYGWTCA
TGAWCRNHGWTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX 		0.483 0.638
BBX
M05764_2.00 		Homo sapiens
TGAACDNYGTTCA
TGAACRNHGTTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX 		0.483 0.638
cic
M06452_2.00 		Drosophila melanogaster
YYCATTSA
TSAATGRR		 B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386 		0.418 0.493
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LDEC000948-PA Sox 137 205

Links

Other Sox family TFs
Other Leptinotarsa decemlineata TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MBD2 Homo sapiens ENSG00000134046 D 0.000
Mbd2 Mus musculus ENSMUSG00000024513 D 0.000
ENSMMUG00000003136 Macaca mulatta ENSMMUG00000003136 I 0.000
ENSAMXG00000017952 Astyanax mexicanus ENSAMXG00000017952 I 0.000
MBD3 Otolemur garnettii ENSOGAG00000024563 N 0.000
Ogr00377 Ophisaurus gracilis Ogr00377 N 0.000
Cmyd_10006703 Chelonia mydas Cmyd_10006703 N 0.000
MBD2 Tursiops truncatus ENSTTRG00000009635 N 0.000
ENSSTOG00000015870 Ictidomys tridecemlineatus ENSSTOG00000015870 N 0.000
MBD2 Pteropus vampyrus ENSPVAG00000008555 N 0.000
MBD3 Pan troglodytes ENSPTRG00000010209 N 0.000
MBD3 Procavia capensis ENSPCAG00000006257 N 0.000
ENSPANG00000015324 Papio anubis ENSPANG00000015324 N 0.000
MBD3 Oryzias latipes ENSORLG00000004850 N 0.000
ENSOPRG00000007642 Ochotona princeps ENSOPRG00000007642 N 0.000
MBD3 Macaca mulatta ENSMMUG00000009014 N 0.000
MBD3 Gorilla gorilla ENSGGOG00000012396 N 0.000
MBD3 Homo sapiens ENSG00000071655 N 0.000
Mbd3 Dipodomys ordii ENSDORG00000004743 N 0.000
ENSCSAG00000011976 Chlorocebus sabaeus ENSCSAG00000011976 N 0.000
MBD3 Cavia porcellus ENSCPOG00000026210 N 0.000
ENSCHOG00000012250 Choloepus hoffmanni ENSCHOG00000012250 N 0.000