PK10992.1 (Cannabis sativa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 PK10992.1 T334928_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.503 0.685
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.503 0.685
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK10992.1 Sox 203 269
PK10992.1 Sox 322 388
PK10992.1 Sox 449 517

Links

Other Sox family TFs
Other Cannabis sativa TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.F04126 Eucalyptus grandis Eucgr.F04126 N
Pm022190 Prunus mume Pm022190 N
29728.m000821 Ricinus communis 29728.m000821 N
cassava25358.m1 Manihot esculenta cassava25358.m1 N
Cucsa.088330 Cucumis sativus Cucsa.088330 N
mgf002286m Mimulus guttatus mgf002286m N
Aquca_023_00033 Aquilegia coerulea Aquca_023_00033 N
Bostr.25463s0361 Boechera stricta Bostr.25463s0361 N
Carubv10001958m.g Capsella rubella Carubv10001958m.g N
Ciclev10002467m.g Citrus clementina Ciclev10002467m.g N
Cla012103 Citrullus lanatus Cla012103 N
gene29104-v1.0-hybrid Fragaria vesca gene29104-v1.0-hybrid N
Gorai.005G074700 Gossypium raimondii Gorai.005G074700 N
Lus10009420.g Linum usitatissimum Lus10009420.g N
MDP0000273602 Malus domestica MDP0000273602 N
orange1.1g028218m.g Citrus sinensis orange1.1g028218m.g N
SapurV1A.0179s0060 Salix purpurea SapurV1A.0179s0060 N
Thhalv10028979m.g Eutrema salsugineum Thhalv10028979m.g N
PK00213.1 Cannabis sativa PK00213.1 N
chr5.LjT08L18.190.nd Lotus japonicus chr5.LjT08L18.190.nd N
ORGLA03G0371400 Oryza glaberrima ORGLA03G0371400 N
GLYMA10G36001 Glycine max GLYMA10G36001 N
GLYMA20G31580 Glycine max GLYMA20G31580 N
MTR_1g096340 Medicago truncatula MTR_1g096340 N
OBART03G40280 Oryza barthii OBART03G40280 N
OGLUM03G40150 Oryza glumaepatula OGLUM03G40150 N
OLONG_012145 Oryza longistaminata OLONG_012145 N
ONIVA03G42160 Oryza nivara ONIVA03G42160 N
OPUNC03G37470 Oryza punctata OPUNC03G37470 N
OPUNC03G37490 Oryza punctata OPUNC03G37490 N
BGIOSGA009486 Oryza indica BGIOSGA009486 N
ORUFI03G42080 Oryza rufipogon ORUFI03G42080 N
OS03G0838900 Oryza sativa OS03G0838900 N
PGSC0003DMG400009226 Solanum tuberosum PGSC0003DMG400009226 N
PRUPE_ppa026991mg Prunus persica PRUPE_ppa026991mg N
Solyc11g017430.1 Solanum lycopersicum Solyc11g017430.1 N
TCM_036345 Theobroma cacao TCM_036345 N
VIT_18s0072g01130 Vitis vinifera VIT_18s0072g01130 N
Ca_04306 Cicer arietinum Ca_04306 N