T (Cavia porcellus)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 ENSCPOG00000001358 T339713_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
T
M05809_2.00 		Homo sapiens
NANGTGYGAHWWNTVRCACCTN
NAGGTGYBANWWDTCRCACNTN		 SELEX
Yin et al.(2017)
T_eDBD_HT-SELEX_1 		0.920 1.000
T
M05810_2.00 		Homo sapiens
DTCRCAYVTABGTGYGAH
DTCRCACVTABRTGYGAH		 SELEX
Yin et al.(2017)
T_eDBD_HT-SELEX_2 		0.920 1.000
T
M09427_2.00 		Homo sapiens
BYNVCANNNVDGTGWKARDN
NHYTMWCACHBNNNTGBNRV		 Misc
Kulakovskiy et al.(2013)
BRAC_HUMAN.H11MO.0.A 		0.920 1.000
T
M11384_2.00 		Homo sapiens
MKHBTSACACSTAGGTGTGAAATK
MATTTCACACCTASGTGTSAVDMK		 Transfac
Matys et al.(2006)
V$BRACH_01 		0.920 1.000
T
M05811_2.00 		Homo sapiens
NABGTGYGAHWWNTVRCACSTN
NASGTGYBANWWDTCRCACVTN		 SELEX
Yin et al.(2017)
T_eDBD_Methyl-HT-SELEX_1 		0.920 1.000
T
M05812_2.00 		Homo sapiens
DTMRCAYVTABGTGYKAH
DTMRCACVTABRTGYKAH		 SELEX
Yin et al.(2017)
T_eDBD_Methyl-HT-SELEX_2 		0.920 1.000
T
M09431_2.00 		Mus musculus
VVNRAWTTSACASNYHDVTGBNMAN
NTKNVCABHDRNSTGTSAAWTYNBB		 Misc
Kulakovskiy et al.(2013)
BRAC_MOUSE.H11MO.0.B 		0.920 0.994
T
M09651_2.00 		Mus musculus
NYTVDCASNNNNSTGHBARNN
NNYTVDCASNNNNSTGHBARN		 Misc
Heinz et al.(2010)
Mesoendoderm-Brachyury_GSE54963 		0.920 0.994
TBX19
M03562_2.00 		Homo sapiens
NDTVRCACVTANGTGYKANN
NNTMRCACNTABGTGYBAHN		 SELEX
Jolma et al.(2013)
TBX19_1 		0.876 0.835
TBX19
M05803_2.00 		Homo sapiens
NAGGTGYBAHWDTMRCACNTN
NANGTGYKAHWDTVRCACCTN		 SELEX
Yin et al.(2017)
TBX19_eDBD_HT-SELEX 		0.876 0.835
TBX19
M05804_2.00 		Homo sapiens
NANGTGYKAHWDTVRCACSTN
NASGTGYBAHWDTMRCACNTN		 SELEX
Yin et al.(2017)
TBX19_eDBD_Methyl-HT-SELEX 		0.876 0.835
byn
M03984_2.00 		Drosophila melanogaster
ABGTGYGADDD
HHHTCRCACVT		 SELEX
Nitta et al.(2015)
byn_1 		0.810 0.744
byn
M03985_2.00 		Drosophila melanogaster
DNGTGYBAHWWDTVRCACNH
DNGTGYBAHWWDTVRCACNH		 SELEX
Nitta et al.(2015)
byn_2 		0.810 0.744
byn
M03986_2.00 		Drosophila melanogaster
RDGTGYGADNDNDNNNNNNDRDGTGYGADD
HHTCRCACHYHNNNNNNHNHNHTCRCACHY		 SELEX
Nitta et al.(2015)
byn_3 		0.810 0.744
byn
M03987_2.00 		Drosophila melanogaster
NNTMRCAYNWWNRTGYKAHN
NDTMRCAYNWWNRTGYKANN		 SELEX
Nitta et al.(2015)
byn_4 		0.810 0.744
byn
M06453_2.00 		Drosophila melanogaster
ADGTGCDA
THGCACHT		 B1H
Zhu et al.(2011)
byn_FlyReg_FBgn0011723 		0.810 0.744
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000001231 T-box 44 219

Links

Other T-box family TFs
Other Cavia porcellus TFs

176 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAPLG00000004964 Anas platyrhynchos ENSAPLG00000004964 I
ENSMGAG00000001351 Meleagris gallopavo ENSMGAG00000001351 I
NBR_0000522801 Nippostrongylus brasiliensis NBR_0000522801 I
OFLC_0000052301 Onchocerca flexuosa OFLC_0000052301 N
L892_g4529 Steinernema scapterisci L892_g4529 N
L893_g15060 Steinernema glaseri L893_g15060 N
L898_g14583 Steinernema monticolum L898_g14583 N
maker-nMf.1.1.scaf00076-augustus-gene-0.21 Meloidogyne floridensis maker-nMf.1.1.scaf00076-augustus-gene-0.21 N
nAv.1.0.1.g05112 Acanthocheilonema viteae nAv.1.0.1.g05112 N
NBR_0000271401 Nippostrongylus brasiliensis NBR_0000271401 N
nLs.2.1.2.g02003 Litomosoides sigmodontis nLs.2.1.2.g02003 N
nOo.2.0.1.g00974 Onchocerca ochengi nOo.2.0.1.g00974 N
HCOI01543700 Haemonchus contortus HCOI01543700 N
PTRK_0000297300 Parastrongyloides trichosuri PTRK_0000297300 N
RSKR_0000082500 Rhabditophanes kr3021 RSKR_0000082500 N
SMUV_0000477801 Syphacia muris SMUV_0000477801 N
SPAL_0001290200 Strongyloides papillosus SPAL_0001290200 N
SSTP_0000571600 Strongyloides stercoralis SSTP_0000571600 N
SVE_0161800 Strongyloides venezuelensis SVE_0161800 N
TCLT_0000791701 Thelazia callipaeda TCLT_0000791701 N
ASU_06962 Ascaris suum ASU_06962 N
Bm7459 Brugia malayi Bm7459 N
CBG06922 Caenorhabditis briggsae CBG06922 N
CRE15772 Caenorhabditis remanei CRE15772 N
sma-2 Caenorhabditis elegans WBGene00004856 N
WBGene00245189 Onchocerca volvulus WBGene00245189 N
Minc06478 Meloidogyne incognita Minc06478 N
ANCDUO_02619 Ancylostoma duodenale ANCDUO_02619 N
ASIM_0000512001 Anisakis simplex ASIM_0000512001 N
L596_g26009 Steinernema carpocapsae L596_g26009 N
BTMF_0000953701 Brugia timori BTMF_0000953701 N
BXY_1512700 Bursaphelenchus xylophilus BXY_1512700 N
DME_0000390001 Dracunculus medinensis DME_0000390001 N
EEL_0000068901 Elaeophora elaphi EEL_0000068901 N
EVEC_0000636701 Enterobius vermicularis EVEC_0000636701 N
HCOI00251100 Haemonchus contortus HCOI00251100 N
WUBG_02400 Wuchereria bancrofti WUBG_02400 N