Pavir.Ib04166 (Panicum virgatum)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 Pavir.Ib04166 T343187_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.776 0.776
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.776 0.776
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.890 0.890
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.827 0.827
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.724 0.724
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.724 0.724
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.724 0.724
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.724 0.724
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.724 0.724
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.724 0.724
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.724 0.724
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.724 0.724
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.724 0.724
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib04166.1.p TBP 9 80
Pavir.Ib04166.1.p TBP 88 171
Pavir.Ib04166.2.p TBP 1 43
Pavir.Ib04166.2.p TBP 51 134

Links

Other TBP family TFs
Other Panicum virgatum TFs

773 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ref-2 Caenorhabditis elegans WBGene00004335 D
CGI_10016117 Crassostrea gigas CGI_10016117 I
CRE00505 Caenorhabditis remanei CRE00505 I
ZIC1 Monodelphis domestica ENSMODG00000021251 I
ENSPFOG00000012980 Poecilia formosa ENSPFOG00000012980 I
WBGene00239980 Onchocerca volvulus WBGene00239980 I
Pvit_01334 Pogona vitticeps Pvit_01334 I
MDOA000052 Musca domestica MDOA000052 I
ANCCEY_00370 Ancylostoma ceylanicum ANCCEY_00370 I
PTRK_0000799900 Parastrongyloides trichosuri PTRK_0000799900 I
RSKR_0001155900 Rhabditophanes kr3021 RSKR_0001155900 I
SPAL_0001746600 Strongyloides papillosus SPAL_0001746600 I
SSTP_0000201100 Strongyloides stercoralis SSTP_0000201100 I
SVE_0347600 Strongyloides venezuelensis SVE_0347600 I
TCLT_0000586501 Thelazia callipaeda TCLT_0000586501 I