PDK_20s1536561g001 (Phoenix dactylifera)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 PDK_20s1536561g001 T343299_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.725 0.725
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.725 0.725
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.725 0.725
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.725 0.725
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.725 0.725
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.725 0.725
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.725 0.725
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.725 0.725
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.725 0.725
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.725 0.725
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.716 0.716
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.716 0.716
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.716 0.716
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1536561g001 TBP 1 25
PDK_20s1536561g001 TBP 33 116

Links

Other TBP family TFs
Other Phoenix dactylifera TFs

86 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SJAG_00421 Schizosaccharomyces japonicus SJAG_00421 I 0.716
fgeneshPB_pg.12__294 Phycomyces blakesleeanus fgeneshPB_pg.12__294 I 0.716
e_gwh1.1.1.994.1 Pichia stipitis e_gwh1.1.1.994.1 I 0.716
e_gw1.1.2234.1 Mucor circinelloides e_gw1.1.2234.1 I 0.716
e_gw1.11.241.1 Mucor circinelloides e_gw1.11.241.1 I 0.716
Traes_5BS_AD70A5AF7 Triticum aestivum Traes_5BS_AD70A5AF7 I 0.752
Traes_5AS_03EE89960 Triticum aestivum Traes_5AS_03EE89960 I 0.752
Traes_4AL_D48452758 Triticum aestivum Traes_4AL_D48452758 I 0.752
SU7_0942 Saccharomyces arboricola SU7_0942 I 0.716
SPAPADRAFT_58486 Spathaspora passalidarum SPAPADRAFT_58486 I 0.716
SKUD_163604 Saccharomyces kudriavzevii SKUD_163604 I 0.716
mgf009543m Mimulus guttatus mgf009543m I 0.761
Si039719m.g Setaria italica Si039719m.g I 0.725
Si023295m.g Setaria italica Si023295m.g I 0.761
SELMODRAFT_37142 Selaginella moellendorffii SELMODRAFT_37142 I 0.725
SELMODRAFT_16705 Selaginella moellendorffii SELMODRAFT_16705 I 0.725
Sb08g022273 Sorghum bicolor Sb08g022273 I 0.761
RHTO_08020 Rhodosporidium toruloides RHTO_08020 I 0.716
POPTR_0019s04890 Populus trichocarpa POPTR_0019s04890 I 0.761
PNEG_00724 Pneumocystis murina PNEG_00724 I 0.716
PICST_38880 Scheffersomyces stipitis PICST_38880 I 0.716
OS10G0432300 Oryza sativa OS10G0432300 I 0.752
Pavir.Ib03379 Panicum virgatum Pavir.Ib03379 I 0.761
PDK_20s1328661g002 Phoenix dactylifera PDK_20s1328661g002 I 0.755
tbpl2.L Xenopus laevis XB-GENE-876147 I 0.716
PredSwiss_EST785.1 Pneumocystis carinii PredSwiss_EST785.1 I 0.716
PredSwiss_CON251.1 Pneumocystis carinii PredSwiss_CON251.1 I 0.706
PredSwiss_ASS2010_1907.1 Pneumocystis carinii PredSwiss_ASS2010_1907.1 I 0.716
Thhalv10022351m.g Eutrema salsugineum Thhalv10022351m.g I 0.752
SapurV1A.0308s0180 Salix purpurea SapurV1A.0308s0180 I 0.743
Pavir.J26398 Panicum virgatum Pavir.J26398 I 0.752
Pavir.J18057 Panicum virgatum Pavir.J18057 I 0.706
Pavir.Ib04166 Panicum virgatum Pavir.Ib04166 I 0.752
ORUFI10G11330 Oryza rufipogon ORUFI10G11330 I 0.752
orange1.1g029591m.g Citrus sinensis orange1.1g029591m.g I 0.752
MDP0000289755 Malus domestica MDP0000289755 I 0.706
Gorai.004G244700 Gossypium raimondii Gorai.004G244700 I 0.752
Carubv10010337m.g Capsella rubella Carubv10010337m.g I 0.752
Cagra.0001s0028 Capsella grandiflora Cagra.0001s0028 I 0.752
Bostr.6758s0027 Boechera stricta Bostr.6758s0027 I 0.743
Bostr.3640s0136 Boechera stricta Bostr.3640s0136 I 0.743
Aquca_037_00296 Aquilegia coerulea Aquca_037_00296 I 0.748
Aquca_013_00902 Aquilegia coerulea Aquca_013_00902 I 0.761
Bra030855 Brassica rapa Bra030855 I 0.743
TBPL2 Microcebus murinus ENSMICG00000000943 I 0.706
TBPL2 Meleagris gallopavo ENSMGAG00000013657 I 0.716
ENSGMOG00000012435 Gadus morhua ENSGMOG00000012435 I 0.725
TBPL2 Gallus gallus ENSGALG00000012145 I 0.716
tbp Gasterosteus aculeatus ENSGACG00000016147 I 0.725
tbp Danio rerio ENSDARG00000014994 I 0.725
ENSAPLG00000006951 Anas platyrhynchos ENSAPLG00000006951 I 0.716
ENSAMXG00000003582 Astyanax mexicanus ENSAMXG00000003582 I 0.725
CORT_0A11870 Candida orthopsilosis CORT_0A11870 I 0.716
BRADI4G01150 Brachypodium distachyon BRADI4G01150 I 0.743
ENSONIG00000017061 Oreochromis niloticus ENSONIG00000017061 I 0.725
Bra028725 Brassica rapa Bra028725 I 0.725
Bo6g051360 Brassica oleracea Bo6g051360 I 0.743
Bo3g185290 Brassica oleracea Bo3g185290 I 0.743
Bo2g007300 Brassica oleracea Bo2g007300 I 0.716
BGIOSGA031868 Oryza indica BGIOSGA031868 I 0.752
BGIOSGA013244 Oryza indica BGIOSGA013244 I 0.761
TBP2 Arabidopsis thaliana AT1G55520 I 0.743
AMTR_s00047p00131170 Amborella trichopoda AMTR_s00047p00131170 I 0.779
RO3G_16620 Rhizopus oryzae RO3G_16620 I 0.706
RO3G_15549 Rhizopus oryzae RO3G_15549 I 0.716
LotgiG129673 Lottia gigantea LotgiG129673 I 0.706
ORUFI03G29280 Oryza rufipogon ORUFI03G29280 I 0.761
ORGLA10G0095800 Oryza glaberrima ORGLA10G0095800 I 0.752
ORGLA06G0285000 Oryza glaberrima ORGLA06G0285000 I 0.761
OPUNC01G04710 Oryza punctata OPUNC01G04710 I 0.768
ONIVA01G08510 Oryza nivara ONIVA01G08510 I 0.752
OMERI10G08240 Oryza meridionalis OMERI10G08240 I 0.752
OLONG_010453 Oryza longistaminata OLONG_010453 I 0.757
MTR_4g029010 Medicago truncatula MTR_4g029010 I 0.761
MLOC_37365 Hordeum vulgare MLOC_37365 I 0.752
LPERR10G07850 Leersia perrieri LPERR10G07850 I 0.752
CPAG_04505 Candida parapsilosis CPAG_04505 I 0.716
LELG_01062 Lodderomyces elongisporus LELG_01062 I 0.716
GRMZM2G161418 Zea mays GRMZM2G161418 I 0.752
GLOINDRAFT_79885 Rhizophagus irregularis GLOINDRAFT_79885 I 0.716
TBP2 Arabidopsis lyrata fgenesh2_kg.1__4564__AT1G55520.2 I 0.743
TBPL2 Tursiops truncatus ENSTTRG00000002034 I 0.706
trf3 Takifugu rubripes ENSTRUG00000009283 I 0.725
tbpl2 Tetraodon nigroviridis ENSTNIG00000002597 I 0.725
ENSPMAG00000006175 Petromyzon marinus ENSPMAG00000006175 I 0.716
tbp Oryzias latipes ENSORLG00000010757 I 0.706