Bra030952 (Brassica rapa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bra030952 T343792_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.945 0.542
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.944 0.542
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.944 0.542
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.944 0.542
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.942 0.534
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.911 0.466
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.884 0.398
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.868 0.381
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.868 0.381
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.864 0.398
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.864 0.398
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.845 0.381
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.844 0.364
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.844 0.364
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.830 0.364
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.829 0.364
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra030952.1-P TCP 53 210

Links

Other TCP family TFs
Other Brassica rapa TFs

416 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
THAP1 Homo sapiens ENSG00000131931 D 0.000
ENSSSCG00000027223 Sus scrofa ENSSSCG00000027223 I 0.000
THAP1 Monodelphis domestica ENSMODG00000010093 I 0.000
Thap1 Mus musculus ENSMUSG00000037214 I 0.000
ENSNLEG00000012946 Nomascus leucogenys ENSNLEG00000012946 I 0.000
ENSOARG00000003516 Ovis aries ENSOARG00000003516 I 0.000
THAP1 Oryctolagus cuniculus ENSOCUG00000001391 I 0.000
THAP1 Otolemur garnettii ENSOGAG00000002708 I 0.000
ENSONIG00000012619 Oreochromis niloticus ENSONIG00000012619 I 0.000
ENSPANG00000007346 Papio anubis ENSPANG00000007346 I 0.000
ENSPFOG00000004261 Poecilia formosa ENSPFOG00000004261 I 0.000
THAP1 Pan troglodytes ENSPTRG00000020211 I 0.000
THAP1 Pteropus vampyrus ENSPVAG00000013496 I 0.000
Thap1 Rattus norvegicus ENSRNOG00000056956 I 0.000
ENSMMUG00000000162 Macaca mulatta ENSMMUG00000000162 I 0.000
ENSSTOG00000023122 Ictidomys tridecemlineatus ENSSTOG00000023122 I 0.000
ENSTSYG00000006585 Tarsius syrichta ENSTSYG00000006585 I 0.000
THAP1 Tursiops truncatus ENSTTRG00000008823 I 0.000
THAP1 Vicugna pacos ENSVPAG00000001157 I 0.000
ENSXMAG00000003907 Xiphophorus maculatus ENSXMAG00000003907 I 0.000
ENSBTAP00000010035-D1 Bos grunniens ENSBTAP00000010035-D1 I 0.000
ENSP00000254250 Macaca fascicularis ENSP00000254250 I 0.000
Myotis_brandtii_thap1_10030544 Myotis brandtii Myotis_brandtii_thap1_10030544 I 0.000
Pvit_16121 Pogona vitticeps Pvit_16121 I 0.000
AAH77429 Xenopus laevis AAH77429 I 0.000
thap1 Xenopus tropicalis XB-GENE-1008758 I 0.000
thap1.L Xenopus laevis XB-GENE-1008764 I 0.000
THAP1 Erinaceus europaeus ENSEEUG00000003332 I 0.000
ENSAMEG00000004992 Ailuropoda melanoleuca ENSAMEG00000004992 I 0.000
ENSAMXG00000007136 Astyanax mexicanus ENSAMXG00000007136 I 0.000
THAP1 Bos taurus ENSBTAG00000007629 I 0.000
THAP1 Canis familiaris ENSCAFG00000005418 I 0.000
ENSCHOG00000005457 Choloepus hoffmanni ENSCHOG00000005457 I 0.000
ENSCHOG00000005563 Choloepus hoffmanni ENSCHOG00000005563 I 0.000
THAP1 Callithrix jacchus ENSCJAG00000003466 I 0.000
ENSCPOG00000021608 Cavia porcellus ENSCPOG00000021608 I 0.000
ENSCSAG00000014961 Chlorocebus sabaeus ENSCSAG00000014961 I 0.000
THAP1 Dasypus novemcinctus ENSDNOG00000047233 I 0.000
ENSDORG00000014207 Dipodomys ordii ENSDORG00000014207 I 0.000
THAP1 Anolis carolinensis ENSACAG00000005705 I 0.000
THAP1 Echinops telfairi ENSETEG00000018764 I 0.000
ENSFALG00000005181 Ficedula albicollis ENSFALG00000005181 I 0.000
THAP1 Felis catus ENSFCAG00000027837 I 0.000
thap1 Gasterosteus aculeatus ENSGACG00000018371 I 0.000
THAP1 Gallus gallus ENSGALG00000015385 I 0.000
THAP1 Gorilla gorilla ENSGGOG00000022708 I 0.000
ENSLACG00000000288 Latimeria chalumnae ENSLACG00000000288 I 0.000
ENSLACG00000003453 Latimeria chalumnae ENSLACG00000003453 I 0.000
THAP1 Loxodonta africana ENSLAFG00000003647 I 0.000
ENSLOCG00000003237 Lepisosteus oculatus ENSLOCG00000003237 I 0.000
THAP1 Myotis lucifugus ENSMLUG00000003837 I 0.000
thap1 Danio rerio ENSDARG00000059020 N 0.000