OBART04G03730 (Oryza barthii)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 OBART04G03730 T344070_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.928 0.545
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.928 0.545
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.926 0.568
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.925 0.557
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.925 0.557
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.925 0.557
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.925 0.557
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.923 0.580
TCP15
M00892_2.00 		Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP15 		0.923 0.602
TCP15
M07277_2.00 		Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_col_a 		0.923 0.602
TCP15
M07278_2.00 		Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a 		0.923 0.602
TCP15
M11394_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP15_01 		0.923 0.602
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.922 0.545
TCP21
M07292_2.00 		Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN		 Dap-seq
OMalley et al.(2016)
At5g08330_col_a 		0.922 0.614
TCP21
M07293_2.00 		Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a 		0.922 0.614
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.921 0.580
TCP23
M00891_2.00 		Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP23 		0.921 0.580
TCP8
M01311_2.00 		Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN		 PBM
Lambert et al.(2019)
pTH11569 		0.918 0.580
TCP7
M07294_2.00 		Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY		 Dap-seq
OMalley et al.(2016)
TCP7_col_a 		0.918 0.614
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.915 0.580
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.909 0.568
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.909 0.568
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.909 0.591
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.908 0.580
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.908 0.534
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.908 0.534
OsI_08196
M02513_2.00 		Oryza sativa
GGGCCCAC
GTGGGCCC		 PBM
Weirauch et al.(2014)
pTH9274 		0.903 0.568
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9232 		0.903 0.534
OS02G0635800
M02512_2.00 		Oryza sativa
NBGGGCCCVN
NBGGGCCCVN		 PBM
Weirauch et al.(2014)
pTH8856 		0.903 0.591
TCP9
M01086_2.00 		Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN		 PBM
Sullivan et al.(2014)
pTH9796 		0.901 0.557
TCP9
M07281_2.00 		Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a 		0.901 0.557
TCP9
M07282_2.00 		Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH		 Dap-seq
OMalley et al.(2016)
At2g45680_col_b 		0.901 0.557
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.898 0.557
TCP11
M11395_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_01 		0.862 0.568
TCP11
M11396_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_02 		0.862 0.568
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART04G03730.1 TCP 54 182

Links

Other TCP family TFs
Other Oryza barthii TFs

638 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM5G857701 Zea mays GRMZM5G857701 I
LPERR02G30240 Leersia perrieri LPERR02G30240 I
OGLUM02G38020 Oryza glumaepatula OGLUM02G38020 I
Sb04g036640 Sorghum bicolor Sb04g036640 I
Si017967m.g Setaria italica Si017967m.g I
Traes_6BL_D00F04562 Triticum aestivum Traes_6BL_D00F04562 I
Pavir.Aa00144 Panicum virgatum Pavir.Aa00144 I
Pavir.J34679 Panicum virgatum Pavir.J34679 I
anac074 Arabidopsis thaliana AT4G28530 N
BGIOSGA009257 Oryza indica BGIOSGA009257 N
BGIOSGA016756 Oryza indica BGIOSGA016756 N
Bo1g017380 Brassica oleracea Bo1g017380 N
Bo8g054390 Brassica oleracea Bo8g054390 N
Bra010362 Brassica rapa Bra010362 N
Bra011037 Brassica rapa Bra011037 N
Bra024194 Brassica rapa Bra024194 N
BRADI5G15587 Brachypodium distachyon BRADI5G15587 N
F775_08585 Aegilops tauschii F775_08585 N
F775_17109 Aegilops tauschii F775_17109 N
anac074 Arabidopsis lyrata fgenesh2_kg.7__1345__AT4G28530.1 N
GLYMA03G32116 Glycine max GLYMA03G32116 N
GLYMA10G04350 Glycine max GLYMA10G04350 N
GLYMA13G18620 Glycine max GLYMA13G18620 N
GLYMA19G34881 Glycine max GLYMA19G34881 N
GRMZM2G043813 Zea mays GRMZM2G043813 N
GRMZM2G062009 Zea mays GRMZM2G062009 N
GRMZM2G081930 Zea mays GRMZM2G081930 N
GSMUA_Achr11G00880_001 Musa acuminata GSMUA_Achr11G00880_001 N
GSMUA_Achr11G22760_001 Musa acuminata GSMUA_Achr11G22760_001 N
GSMUA_Achr1G10860_001 Musa acuminata GSMUA_Achr1G10860_001 N
GSMUA_Achr1G20530_001 Musa acuminata GSMUA_Achr1G20530_001 N
GSMUA_Achr5G18670_001 Musa acuminata GSMUA_Achr5G18670_001 N
GSMUA_Achr8G18980_001 Musa acuminata GSMUA_Achr8G18980_001 N
GSMUA_AchrUn_randomG02760_001 Musa acuminata GSMUA_AchrUn_randomG02760_001 N
LPERR02G20100 Leersia perrieri LPERR02G20100 N
MLOC_12466 Hordeum vulgare MLOC_12466 N
MLOC_5165 Hordeum vulgare MLOC_5165 N
MTR_1g069805 Medicago truncatula MTR_1g069805 N
MTR_7g097090 Medicago truncatula MTR_7g097090 N
OB02G31950 Oryza brachyantha OB02G31950 N
OB02G43380 Oryza brachyantha OB02G43380 N
OB04G25790 Oryza brachyantha OB04G25790 N
OBART02G24560 Oryza barthii OBART02G24560 N
OBART02G36830 Oryza barthii OBART02G36830 N
OBART04G18700 Oryza barthii OBART04G18700 N
OGLUM02G24950 Oryza glumaepatula OGLUM02G24950 N
OGLUM04G18750 Oryza glumaepatula OGLUM04G18750 N
OLONG_000596 Oryza longistaminata OLONG_000596 N
OLONG_011232 Oryza longistaminata OLONG_011232 N
OMERI02G24100 Oryza meridionalis OMERI02G24100 N
OMERI02G34720 Oryza meridionalis OMERI02G34720 N
ONIVA02G26880 Oryza nivara ONIVA02G26880 N
ONIVA02G39640 Oryza nivara ONIVA02G39640 N
ONIVA04G01950 Oryza nivara ONIVA04G01950 N
OPUNC02G33860 Oryza punctata OPUNC02G33860 N
OPUNC04G16450 Oryza punctata OPUNC04G16450 N
ORGLA02G0320500 Oryza glaberrima ORGLA02G0320500 N
ORGLA04G0158100 Oryza glaberrima ORGLA04G0158100 N
ORUFI02G25930 Oryza rufipogon ORUFI02G25930 N
ORUFI02G38340 Oryza rufipogon ORUFI02G38340 N
ORUFI04G20200 Oryza rufipogon ORUFI04G20200 N
OS02G0810900 Oryza sativa OS02G0810900 N
OS04G0515900 Oryza sativa OS04G0515900 N
PGSC0003DMG400010294 Solanum tuberosum PGSC0003DMG400010294 N
PGSC0003DMG400020147 Solanum tuberosum PGSC0003DMG400020147 N
PGSC0003DMG400025505 Solanum tuberosum PGSC0003DMG400025505 N
PRUPE_ppa009628mg Prunus persica PRUPE_ppa009628mg N
Sb04g026440 Sorghum bicolor Sb04g026440 N
Si010799m.g Setaria italica Si010799m.g N
Si018001m.g Setaria italica Si018001m.g N
Si036835m.g Setaria italica Si036835m.g N
Solyc06g008360.2 Solanum lycopersicum Solyc06g008360.2 N
Solyc09g025310.2 Solanum lycopersicum Solyc09g025310.2 N
TCM_003998 Theobroma cacao TCM_003998 N
Traes_2BL_D718E27A9 Triticum aestivum Traes_2BL_D718E27A9 N
Traes_6AL_B272C86BE Triticum aestivum Traes_6AL_B272C86BE N
Traes_6AL_B92597EA9 Triticum aestivum Traes_6AL_B92597EA9 N
Traes_6BL_99F790D57 Triticum aestivum Traes_6BL_99F790D57 N
Traes_6DL_1ABE78799 Triticum aestivum Traes_6DL_1ABE78799 N
Traes_6DL_8A1342D56 Triticum aestivum Traes_6DL_8A1342D56 N
TRIUR3_23299 Triticum urartu TRIUR3_23299 N
TRIUR3_32754 Triticum urartu TRIUR3_32754 N
TRIUR3_33179 Triticum urartu TRIUR3_33179 N
Ca_07743 Cicer arietinum Ca_07743 N
Pm020580 Prunus mume Pm020580 N
cassava41082.m1 Manihot esculenta cassava41082.m1 N
mgf018312m Mimulus guttatus mgf018312m N
Aquca_017_00744 Aquilegia coerulea Aquca_017_00744 N
Bostr.7867s0694 Boechera stricta Bostr.7867s0694 N
Cagra.1225s0038 Capsella grandiflora Cagra.1225s0038 N
Carubv10005139m.g Capsella rubella Carubv10005139m.g N
Ciclev10021312m.g Citrus clementina Ciclev10021312m.g N
Eucgr.K03256 Eucalyptus grandis Eucgr.K03256 N
evm.TU.supercontig_165.12 Carica papaya evm.TU.supercontig_165.12 N
gene08112-v1.0-hybrid Fragaria vesca gene08112-v1.0-hybrid N
Gorai.001G178800 Gossypium raimondii Gorai.001G178800 N
Gorai.001G254300 Gossypium raimondii Gorai.001G254300 N
Gorai.004G221300 Gossypium raimondii Gorai.004G221300 N
Lus10022915.g Linum usitatissimum Lus10022915.g N
Lus10033905.g Linum usitatissimum Lus10033905.g N
MDP0000697030 Malus domestica MDP0000697030 N
Pavir.Aa01668 Panicum virgatum Pavir.Aa01668 N
Pavir.Ab02337 Panicum virgatum Pavir.Ab02337 N
Pavir.Ga01251 Panicum virgatum Pavir.Ga01251 N
Pavir.Gb00655 Panicum virgatum Pavir.Gb00655 N
Pavir.Ib03261 Panicum virgatum Pavir.Ib03261 N
Pavir.J11268 Panicum virgatum Pavir.J11268 N
SapurV1A.0006s0680 Salix purpurea SapurV1A.0006s0680 N
SapurV1A.0233s0110 Salix purpurea SapurV1A.0233s0110 N
Thhalv10025606m.g Eutrema salsugineum Thhalv10025606m.g N
PK19051.1 Cannabis sativa PK19051.1 N
PDK_20s1301681g003 Phoenix dactylifera PDK_20s1301681g003 N
PDK_20s1648061g001 Phoenix dactylifera PDK_20s1648061g001 N