MDP0000259723 (Malus domestica)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 MDP0000259723 T344932_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.891 0.367
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.887 0.360
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.882 0.381
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.882 0.381
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.882 0.381
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.863 0.360
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.850 0.345
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.843 0.367
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.839 0.360
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000259723 TCP 56 210

Links

Other TCP family TFs
Other Malus domestica TFs

266 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCP3 Arabidopsis thaliana AT1G53230 D 0.882
TCP4 Arabidopsis thaliana AT3G15030 D 0.887
TCP2 Arabidopsis thaliana AT4G18390 D 0.839
TCP2 Arabidopsis lyrata fgenesh2_kg.7__2455__AT4G18390.1 D 0.843
OS01G0213800 Oryza sativa OS01G0213800 D 0.863
TCP4 Arabidopsis lyrata scaffold_301743.1 D 0.891
LjT20A21.20.nc Lotus japonicus LjT20A21.20.nc D 0.850
AC205574.3_FG006 Zea mays AC205574.3_FG006 I 0.877
AMTR_s00007p00041830 Amborella trichopoda AMTR_s00007p00041830 I 0.881
AMTR_s00021p00158020 Amborella trichopoda AMTR_s00021p00158020 I 0.896
AMTR_s00029p00245970 Amborella trichopoda AMTR_s00029p00245970 I 0.852
AMTR_s00092p00113360 Amborella trichopoda AMTR_s00092p00113360 I 0.824
AMTR_s00119p00135380 Amborella trichopoda AMTR_s00119p00135380 I 0.879
AMTR_s00133p00053750 Amborella trichopoda AMTR_s00133p00053750 I 0.840
TCP10 Arabidopsis thaliana AT2G31070 I 0.893
PCF5 Oryza indica BGIOSGA002128 I 0.863
PCF6 Oryza indica BGIOSGA013684 I 0.859
PCF8 Oryza indica BGIOSGA037799 I 0.829
Bo1g019520 Brassica oleracea Bo1g019520 I 0.831
Bo1g129830 Brassica oleracea Bo1g129830 I 0.880
Bo3g066540 Brassica oleracea Bo3g066540 I 0.899
Bo3g147760 Brassica oleracea Bo3g147760 I 0.836
Bo4g053680 Brassica oleracea Bo4g053680 I 0.893
Bo5g127500 Brassica oleracea Bo5g127500 I 0.901
Bo7g105960 Brassica oleracea Bo7g105960 I 0.838
Bra001579 Brassica rapa Bra001579 I 0.887
Bra010789 Brassica rapa Bra010789 I 0.845
Bra012600 Brassica rapa Bra012600 I 0.838
Bra018280 Brassica rapa Bra018280 I 0.889
Bra021586 Brassica rapa Bra021586 I 0.887
Bra027284 Brassica rapa Bra027284 I 0.908
Bra030952 Brassica rapa Bra030952 I 0.872
BRADI1G06460 Brachypodium distachyon BRADI1G06460 I 0.824
BRADI1G58450 Brachypodium distachyon BRADI1G58450 I 0.856
BRADI2G06890 Brachypodium distachyon BRADI2G06890 I 0.863
BRADI2G50190 Brachypodium distachyon BRADI2G50190 I 0.833
BRADI4G01547 Brachypodium distachyon BRADI4G01547 I 0.847
F775_07590 Aegilops tauschii F775_07590 I 0.836
TCP3 Arabidopsis lyrata fgenesh2_kg.1__4401__AT1G53230.1 I 0.889
GLYMA05G27367 Glycine max GLYMA05G27367 I 0.851
GLYMA06G34330 Glycine max GLYMA06G34330 I 0.881
GLYMA06G43721 Glycine max GLYMA06G43721 I 0.894
GLYMA08G10350 Glycine max GLYMA08G10350 I 0.845
GLYMA12G14200 Glycine max GLYMA12G14200 I 0.893
GLYMA12G20160 Glycine max GLYMA12G20160 I 0.878
GLYMA12G33640 Glycine max GLYMA12G33640 I 0.889
GLYMA12G35720 Glycine max GLYMA12G35720 I 0.884
GLYMA13G29160 Glycine max GLYMA13G29160 I 0.853
GLYMA13G34690 Glycine max GLYMA13G34690 I 0.893
GLYMA13G36840 Glycine max GLYMA13G36840 I 0.899
GLYMA15G09910 Glycine max GLYMA15G09910 I 0.851
GRMZM2G015037 Zea mays GRMZM2G015037 I 0.836
GRMZM2G020805 Zea mays GRMZM2G020805 I 0.851
GRMZM2G089361 Zea mays GRMZM2G089361 I 0.866
GRMZM2G115516 Zea mays GRMZM2G115516 I 0.868
GRMZM2G148022 Zea mays GRMZM2G148022 I 0.838
GRMZM2G180568 Zea mays GRMZM2G180568 I 0.832
GSMUA_Achr10G01020_001 Musa acuminata GSMUA_Achr10G01020_001 I 0.878
GSMUA_Achr10G14340_001 Musa acuminata GSMUA_Achr10G14340_001 I 0.880
GSMUA_Achr2G12990_001 Musa acuminata GSMUA_Achr2G12990_001 I 0.859
GSMUA_Achr3G03540_001 Musa acuminata GSMUA_Achr3G03540_001 I 0.893
GSMUA_Achr3G31370_001 Musa acuminata GSMUA_Achr3G31370_001 I 0.889
GSMUA_Achr4G22960_001 Musa acuminata GSMUA_Achr4G22960_001 I 0.867
GSMUA_Achr4G31520_001 Musa acuminata GSMUA_Achr4G31520_001 I 0.833
GSMUA_Achr5G02530_001 Musa acuminata GSMUA_Achr5G02530_001 I 0.863
GSMUA_Achr5G06660_001 Musa acuminata GSMUA_Achr5G06660_001 I 0.878
GSMUA_Achr6G14430_001 Musa acuminata GSMUA_Achr6G14430_001 I 0.878
GSMUA_Achr7G01160_001 Musa acuminata GSMUA_Achr7G01160_001 I 0.867
GSMUA_Achr7G13980_001 Musa acuminata GSMUA_Achr7G13980_001 I 0.895
GSMUA_Achr7G25320_001 Musa acuminata GSMUA_Achr7G25320_001 I 0.855
GSMUA_Achr8G19990_001 Musa acuminata GSMUA_Achr8G19990_001 I 0.872
LPERR01G06830 Leersia perrieri LPERR01G06830 I 0.870
LPERR03G30870 Leersia perrieri LPERR03G30870 I 0.845
LPERR07G02820 Leersia perrieri LPERR07G02820 I 0.859
LPERR12G15920 Leersia perrieri LPERR12G15920 I 0.841
MLOC_10214 Hordeum vulgare MLOC_10214 I 0.867
MLOC_12004 Hordeum vulgare MLOC_12004 I 0.833
MLOC_63989 Hordeum vulgare MLOC_63989 I 0.863
MLOC_68285 Hordeum vulgare MLOC_68285 I 0.879
MLOC_72581 Hordeum vulgare MLOC_72581 I 0.833
MTR_2g078200 Medicago truncatula MTR_2g078200 I 0.864
MTR_2g090960 Medicago truncatula MTR_2g090960 I 0.896
MTR_4g079580 Medicago truncatula MTR_4g079580 I 0.881
MTR_8g463380 Medicago truncatula MTR_8g463380 I 0.890
OBART01G07230 Oryza barthii OBART01G07230 I 0.863
OGLUM01G08160 Oryza glumaepatula OGLUM01G08160 I 0.863
OGLUM03G36280 Oryza glumaepatula OGLUM03G36280 I 0.859
OGLUM12G20570 Oryza glumaepatula OGLUM12G20570 I 0.829
OLONG_003082 Oryza longistaminata OLONG_003082 I 0.855
OMERI01G07200 Oryza meridionalis OMERI01G07200 I 0.865
OMERI02G31110 Oryza meridionalis OMERI02G31110 I 0.832
OMERI03G33790 Oryza meridionalis OMERI03G33790 I 0.851
OMERI07G02020 Oryza meridionalis OMERI07G02020 I 0.859
OMERI12G13760 Oryza meridionalis OMERI12G13760 I 0.827
ONIVA01G09270 Oryza nivara ONIVA01G09270 I 0.863
ONIVA03G37780 Oryza nivara ONIVA03G37780 I 0.859
ONIVA12G17870 Oryza nivara ONIVA12G17870 I 0.829
OPUNC01G06940 Oryza punctata OPUNC01G06940 I 0.863
OPUNC07G03260 Oryza punctata OPUNC07G03260 I 0.863
ORGLA01G0062300 Oryza glaberrima ORGLA01G0062300 I 0.863
ORGLA03G0335700 Oryza glaberrima ORGLA03G0335700 I 0.845
ORGLA12G0161900 Oryza glaberrima ORGLA12G0161900 I 0.829
ORUFI01G07780 Oryza rufipogon ORUFI01G07780 I 0.863
ORUFI03G38070 Oryza rufipogon ORUFI03G38070 I 0.851
PCF6 Oryza sativa OS03G0785800 I 0.851
PGSC0003DMG400009406 Solanum tuberosum PGSC0003DMG400009406 I 0.883
PGSC0003DMG400012396 Solanum tuberosum PGSC0003DMG400012396 I 0.888
PGSC0003DMG400015377 Solanum tuberosum PGSC0003DMG400015377 I 0.878
PGSC0003DMG400019904 Solanum tuberosum PGSC0003DMG400019904 I 0.833
PGSC0003DMG400022964 Solanum tuberosum PGSC0003DMG400022964 I 0.893
PGSC0003DMG400026626 Solanum tuberosum PGSC0003DMG400026626 I 0.900
XM_002300382.1 Populus trichocarpa POPTR_0001s38480 I 0.899
POPTR_0004s06440 Populus trichocarpa POPTR_0004s06440 I 0.826
POPTR_0011s02350 Populus trichocarpa POPTR_0011s02350 I 0.843
POPTR_0011s09890 Populus trichocarpa POPTR_0011s09890 I 0.886
POPTR_0013s12370 Populus trichocarpa POPTR_0013s12370 I 0.895
POPTR_0019s12110 Populus trichocarpa POPTR_0019s12110 I 0.891
PRUPE_ppa004612mg Prunus persica PRUPE_ppa004612mg I 0.848
PRUPE_ppa004661mg Prunus persica PRUPE_ppa004661mg I 0.888
PRUPE_ppa007094mg Prunus persica PRUPE_ppa007094mg I 0.909
PRUPE_ppb024383mg Prunus persica PRUPE_ppb024383mg I 0.954
Sb01g006020 Sorghum bicolor Sb01g006020 I 0.868
Sb02g003070 Sorghum bicolor Sb02g003070 I 0.851
Sb03g001940 Sorghum bicolor Sb03g001940 I 0.879
Sb03g034918 Sorghum bicolor Sb03g034918 I 0.829
Sb08g021690 Sorghum bicolor Sb08g021690 I 0.836
TCP10 Arabidopsis lyrata scaffold_401627.1 I 0.893
SELMODRAFT_104521 Selaginella moellendorffii SELMODRAFT_104521 I 0.851
SELMODRAFT_28794 Selaginella moellendorffii SELMODRAFT_28794 I 0.827
SELMODRAFT_7330 Selaginella moellendorffii SELMODRAFT_7330 I 0.850
SELMODRAFT_89227 Selaginella moellendorffii SELMODRAFT_89227 I 0.851
Si004564m.g Setaria italica Si004564m.g I 0.877
Si022811m.g Setaria italica Si022811m.g I 0.841
Si036075m.g Setaria italica Si036075m.g I 0.861
Solyc02g077250.2 Solanum lycopersicum Solyc02g077250.2 I 0.909
Solyc05g012840.1 Solanum lycopersicum Solyc05g012840.1 I 0.905
Solyc05g032780.1 Solanum lycopersicum Solyc05g032780.1 I 0.901
Solyc07g053410.2 Solanum lycopersicum Solyc07g053410.2 I 0.889
Solyc07g062680.1 Solanum lycopersicum Solyc07g062680.1 I 0.888
Solyc08g048370.2 Solanum lycopersicum Solyc08g048370.2 I 0.830
Solyc08g048390.1 Solanum lycopersicum Solyc08g048390.1 I 0.841
Solyc10g008780.1 Solanum lycopersicum Solyc10g008780.1 I 0.900
Solyc10g018710.1 Solanum lycopersicum Solyc10g018710.1 I 0.885
Solyc11g045640.1 Solanum lycopersicum Solyc11g045640.1 I 0.892
Solyc12g014140.1 Solanum lycopersicum Solyc12g014140.1 I 0.882
TCM_003652 Theobroma cacao TCM_003652 I 0.896
TCM_029442 Theobroma cacao TCM_029442 I 0.853
TCM_031706 Theobroma cacao TCM_031706 I 0.891
Traes_2AL_EA60A06AC Triticum aestivum Traes_2AL_EA60A06AC I 0.858
Traes_2BL_36A3AB3A2 Triticum aestivum Traes_2BL_36A3AB3A2 I 0.856
TRAES3BF014900010CFD_g Triticum aestivum TRAES3BF014900010CFD_g I 0.879
Traes_5BL_2DDBAA0C2 Triticum aestivum Traes_5BL_2DDBAA0C2 I 0.852
Traes_5BS_77558D2A3 Triticum aestivum Traes_5BS_77558D2A3 I 0.838
Traes_5DS_643EDFE5B Triticum aestivum Traes_5DS_643EDFE5B I 0.838
VIT_10s0003g00870 Vitis vinifera VIT_10s0003g00870 I 0.892
TCP2 Vitis vinifera VIT_10s0003g03910 I 0.842
TCP10 Vitis vinifera VIT_12s0028g02520 I 0.894
VIT_19s0014g01680 Vitis vinifera VIT_19s0014g01680 I 0.896
Ca_00482 Cicer arietinum Ca_00482 I 0.865
Ca_02473 Cicer arietinum Ca_02473 I 0.903
Ca_05033 Cicer arietinum Ca_05033 I 0.845
Ca_11295 Cicer arietinum Ca_11295 I 0.882
Ca_12866 Cicer arietinum Ca_12866 I 0.895
Ca_16227 Cicer arietinum Ca_16227 I 0.895
Cla002460 Citrullus lanatus Cla002460 I 0.894
Cla013734 Citrullus lanatus Cla013734 I 0.906
Cla016530 Citrullus lanatus Cla016530 I 0.869
Cla019865 Citrullus lanatus Cla019865 I 0.832
Cla023702 Citrullus lanatus Cla023702 I 0.875
Pm010118 Prunus mume Pm010118 I 0.956
Pm010440 Prunus mume Pm010440 I 0.848
Pm011369 Prunus mume Pm011369 I 0.885
Pm029788 Prunus mume Pm029788 I 0.905
29646.m001100 Ricinus communis 29646.m001100 I 0.884
29646.m001101 Ricinus communis 29646.m001101 I 0.902
29693.m001968 Ricinus communis 29693.m001968 I 0.847
30192.m000545 Ricinus communis 30192.m000545 I 0.892
cassava19177.valid.m1 Manihot esculenta cassava19177.valid.m1 I 0.898
cassava2420.valid.m1 Manihot esculenta cassava2420.valid.m1 I 0.847
cassava35669.valid.m1 Manihot esculenta cassava35669.valid.m1 I 0.887
cassava35945.valid.m1 Manihot esculenta cassava35945.valid.m1 I 0.904
cassava7638.valid.m1 Manihot esculenta cassava7638.valid.m1 I 0.847
Cucsa.047860 Cucumis sativus Cucsa.047860 I 0.824
Cucsa.111880 Cucumis sativus Cucsa.111880 I 0.833
Cucsa.122730 Cucumis sativus Cucsa.122730 I 0.875
Cucsa.273460 Cucumis sativus Cucsa.273460 I 0.894
Cucsa.384890 Cucumis sativus Cucsa.384890 I 0.898
fgenesh1_pg.scaffold_332000019 Physcomitrella patens fgenesh1_pg.scaffold_332000019 I 0.835
mgf002386m Mimulus guttatus mgf002386m I 0.872
mgf016959m Mimulus guttatus mgf016959m I 0.841
mgf017929m Mimulus guttatus mgf017929m I 0.850
mgf021685m Mimulus guttatus mgf021685m I 0.876
mgf024988m Mimulus guttatus mgf024988m I 0.841
Aquca_005_00099 Aquilegia coerulea Aquca_005_00099 I 0.894
Aquca_057_00119 Aquilegia coerulea Aquca_057_00119 I 0.833
Bostr.0124s0115 Boechera stricta Bostr.0124s0115 I 0.887
Bostr.24513s0122 Boechera stricta Bostr.24513s0122 I 0.893
Bostr.28625s0206 Boechera stricta Bostr.28625s0206 I 0.887
Bostr.30275s0311 Boechera stricta Bostr.30275s0311 I 0.853
Cagra.0007s0045 Capsella grandiflora Cagra.0007s0045 I 0.887
Cagra.1472s0007 Capsella grandiflora Cagra.1472s0007 I 0.884
Cagra.2527s0006 Capsella grandiflora Cagra.2527s0006 I 0.893
Cagra.2935s0020 Capsella grandiflora Cagra.2935s0020 I 0.847
Cagra.3678s0010 Capsella grandiflora Cagra.3678s0010 I 0.846
Carubv10005003m.g Capsella rubella Carubv10005003m.g I 0.847
Carubv10009348m.g Capsella rubella Carubv10009348m.g I 0.884
Carubv10011113m.g Capsella rubella Carubv10011113m.g I 0.842
Carubv10013851m.g Capsella rubella Carubv10013851m.g I 0.888
Carubv10023502m.g Capsella rubella Carubv10023502m.g I 0.893
Ciclev10008390m.g Citrus clementina Ciclev10008390m.g I 0.900
Ciclev10014986m.g Citrus clementina Ciclev10014986m.g I 0.841
Ciclev10015871m.g Citrus clementina Ciclev10015871m.g I 0.900
Eucgr.F01204 Eucalyptus grandis Eucgr.F01204 I 0.887
Eucgr.K01089 Eucalyptus grandis Eucgr.K01089 I 0.902
evm.TU.supercontig_131.71 Carica papaya evm.TU.supercontig_131.71 I 0.892
evm.TU.supercontig_17.1 Carica papaya evm.TU.supercontig_17.1 I 0.853
evm.TU.supercontig_209.13 Carica papaya evm.TU.supercontig_209.13 I 0.903
gene17805-v1.0-hybrid Fragaria vesca gene17805-v1.0-hybrid I 0.902
gene27171-v1.0-hybrid Fragaria vesca gene27171-v1.0-hybrid I 0.885
gene30370-v1.0-hybrid Fragaria vesca gene30370-v1.0-hybrid I 0.849
Gorai.002G064500 Gossypium raimondii Gorai.002G064500 I 0.887
Gorai.009G153900 Gossypium raimondii Gorai.009G153900 I 0.862
Gorai.009G373000 Gossypium raimondii Gorai.009G373000 I 0.893
Gorai.011G046000 Gossypium raimondii Gorai.011G046000 I 0.843
Gorai.013G172800 Gossypium raimondii Gorai.013G172800 I 0.895
Lus10000463.g Linum usitatissimum Lus10000463.g I 0.893
Lus10023297.g Linum usitatissimum Lus10023297.g I 0.846
MDP0000149841 Malus domestica MDP0000149841 I 0.843
MDP0000182310 Malus domestica MDP0000182310 I 0.983
MDP0000184743 Malus domestica MDP0000184743 I 0.883
MDP0000189749 Malus domestica MDP0000189749 I 0.945
MDP0000243495 Malus domestica MDP0000243495 I 0.887
MDP0000287069 Malus domestica MDP0000287069 I 0.827
MDP0000442611 Malus domestica MDP0000442611 I 0.905
MDP0000916623 Malus domestica MDP0000916623 I 0.885
MDP0000927314 Malus domestica MDP0000927314 I 0.858
orange1.1g009938m.g Citrus sinensis orange1.1g009938m.g I 0.841
orange1.1g014360m.g Citrus sinensis orange1.1g014360m.g I 0.900
orange1.1g019898m.g Citrus sinensis orange1.1g019898m.g I 0.900
Pavir.Ba03864 Panicum virgatum Pavir.Ba03864 I 0.865
Pavir.Cb00038 Panicum virgatum Pavir.Cb00038 I 0.823
Pavir.Ia00505 Panicum virgatum Pavir.Ia00505 I 0.850
Pavir.J03475 Panicum virgatum Pavir.J03475 I 0.883
Pavir.J07136 Panicum virgatum Pavir.J07136 I 0.823
Pavir.J24681 Panicum virgatum Pavir.J24681 I 0.863
Pavir.J36433 Panicum virgatum Pavir.J36433 I 0.859
Pavir.J37910 Panicum virgatum Pavir.J37910 I 0.822
SapurV1A.0083s0520 Salix purpurea SapurV1A.0083s0520 I 0.892
SapurV1A.0232s0150 Salix purpurea SapurV1A.0232s0150 I 0.843
SapurV1A.0303s0040 Salix purpurea SapurV1A.0303s0040 I 0.899
SapurV1A.0500s0140 Salix purpurea SapurV1A.0500s0140 I 0.875
SapurV1A.0971s0180 Salix purpurea SapurV1A.0971s0180 I 0.828
SapurV1A.1073s0050 Salix purpurea SapurV1A.1073s0050 I 0.895
SapurV1A.1394s0060 Salix purpurea SapurV1A.1394s0060 I 0.828
SapurV1A.2882s0020 Salix purpurea SapurV1A.2882s0020 I 0.895
SapurV1A.5793s0010 Salix purpurea SapurV1A.5793s0010 I 0.895
Thhalv10011534m.g Eutrema salsugineum Thhalv10011534m.g I 0.882
Thhalv10016870m.g Eutrema salsugineum Thhalv10016870m.g I 0.902
Thhalv10020786m.g Eutrema salsugineum Thhalv10020786m.g I 0.898
Thhalv10025465m.g Eutrema salsugineum Thhalv10025465m.g I 0.849
PK04257.1 Cannabis sativa PK04257.1 I 0.893
PK12847.1 Cannabis sativa PK12847.1 I 0.905
PK29658.1 Cannabis sativa PK29658.1 I 0.886
chr3.CM0160.1110.nc Lotus japonicus chr3.CM0160.1110.nc I 0.906
Cucsa.127020 Cucumis sativus Cucsa.127020 N 0.839
gene29800-v1.0-hybrid Fragaria vesca gene29800-v1.0-hybrid N 0.858