MDP0000534647 (Malus domestica)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 MDP0000534647 T344952_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.910 0.446
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.887 0.420
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.884 0.420
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.884 0.420
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.878 0.411
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.877 0.420
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.877 0.420
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.822 0.366
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000534647 TCP 90 279

Links

Other TCP family TFs
Other Malus domestica TFs

183 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCP13 Arabidopsis thaliana AT3G02150 D 0.884
TCP17 Arabidopsis thaliana AT5G08070 D 0.877
TCP5 Arabidopsis thaliana AT5G60970 D 0.878
TCP5 Arabidopsis lyrata fgenesh2_kg.8__2066__AT5G60970.1 D 0.887
PK10344.1 Cannabis sativa PK10344.1 D 0.910
LjT20A21.20.nc Lotus japonicus LjT20A21.20.nc D 0.822
AC205574.3_FG006 Zea mays AC205574.3_FG006 I 0.836
AMTR_s00154p00072430 Amborella trichopoda AMTR_s00154p00072430 I 0.906
BGIOSGA000770 Oryza indica BGIOSGA000770 I 0.883
BGIOSGA020173 Oryza indica BGIOSGA020173 I 0.873
Bo2g161240 Brassica oleracea Bo2g161240 I 0.878
Bo3g004670 Brassica oleracea Bo3g004670 I 0.910
Bo3g055460 Brassica oleracea Bo3g055460 I 0.886
Bo5g152840 Brassica oleracea Bo5g152840 I 0.897
Bo7g098260 Brassica oleracea Bo7g098260 I 0.891
Bra001032 Brassica rapa Bra001032 I 0.889
Bra005967 Brassica rapa Bra005967 I 0.899
Bra012990 Brassica rapa Bra012990 I 0.891
Bra029344 Brassica rapa Bra029344 I 0.878
Bra039158 Brassica rapa Bra039158 I 0.895
BRADI2G20060 Brachypodium distachyon BRADI2G20060 I 0.874
BRADI2G50687 Brachypodium distachyon BRADI2G50687 I 0.869
BRADI4G01547 Brachypodium distachyon BRADI4G01547 I 0.842
F775_18470 Aegilops tauschii F775_18470 I 0.878
PTF1 Arabidopsis lyrata fgenesh2_kg.3__146__AT3G02150.2 I 0.886
TCP17 Arabidopsis lyrata fgenesh2_kg.6__773__AT5G08070.1 I 0.890
GLYMA04G32324 Glycine max GLYMA04G32324 I 0.885
GLYMA05G00300 Glycine max GLYMA05G00300 I 0.866
GLYMA06G22240 Glycine max GLYMA06G22240 I 0.864
GLYMA08G27155 Glycine max GLYMA08G27155 I 0.902
GLYMA17G08761 Glycine max GLYMA17G08761 I 0.895
GLYMA18G50371 Glycine max GLYMA18G50371 I 0.896
GLYMA19G03786 Glycine max GLYMA19G03786 I 0.890
GRMZM2G035944 Zea mays GRMZM2G035944 I 0.881
GRMZM2G120151 Zea mays GRMZM2G120151 I 0.881
GRMZM2G166946 Zea mays GRMZM2G166946 I 0.884
GRMZM2G180568 Zea mays GRMZM2G180568 I 0.859
GSMUA_Achr4G32850_001 Musa acuminata GSMUA_Achr4G32850_001 I 0.856
GSMUA_Achr6G27420_001 Musa acuminata GSMUA_Achr6G27420_001 I 0.867
LPERR01G27380 Leersia perrieri LPERR01G27380 I 0.871
LPERR05G18480 Leersia perrieri LPERR05G18480 I 0.884
MLOC_14785 Hordeum vulgare MLOC_14785 I 0.873
MLOC_68285 Hordeum vulgare MLOC_68285 I 0.827
MLOC_70266 Hordeum vulgare MLOC_70266 I 0.861
MLOC_72581 Hordeum vulgare MLOC_72581 I 0.837
MTR_3g026050 Medicago truncatula MTR_3g026050 I 0.873
MTR_4g109660 Medicago truncatula MTR_4g109660 I 0.895
MTR_6g015350 Medicago truncatula MTR_6g015350 I 0.866
OBART01G31910 Oryza barthii OBART01G31910 I 0.883
OGLUM01G36040 Oryza glumaepatula OGLUM01G36040 I 0.884
OGLUM05G23780 Oryza glumaepatula OGLUM05G23780 I 0.873
OMERI01G28950 Oryza meridionalis OMERI01G28950 I 0.883
OMERI05G20240 Oryza meridionalis OMERI05G20240 I 0.850
ONIVA01G36230 Oryza nivara ONIVA01G36230 I 0.883
ONIVA05G23460 Oryza nivara ONIVA05G23460 I 0.873
OPUNC01G30950 Oryza punctata OPUNC01G30950 I 0.869
OPUNC05G20130 Oryza punctata OPUNC05G20130 I 0.845
OPUNC12G17090 Oryza punctata OPUNC12G17090 I 0.831
ORGLA01G0259400 Oryza glaberrima ORGLA01G0259400 I 0.883
ORGLA05G0197200 Oryza glaberrima ORGLA05G0197200 I 0.873
ORUFI01G35100 Oryza rufipogon ORUFI01G35100 I 0.883
ORUFI05G23910 Oryza rufipogon ORUFI05G23910 I 0.876
OS01G0763200 Oryza sativa OS01G0763200 I 0.883
OS05G0513100 Oryza sativa OS05G0513100 I 0.873
PGSC0003DMG400001362 Solanum tuberosum PGSC0003DMG400001362 I 0.899
PGSC0003DMG400004082 Solanum tuberosum PGSC0003DMG400004082 I 0.872
PGSC0003DMG400019904 Solanum tuberosum PGSC0003DMG400019904 I 0.835
PGSC0003DMG400024632 Solanum tuberosum PGSC0003DMG400024632 I 0.897
PGSC0003DMG400026568 Solanum tuberosum PGSC0003DMG400026568 I 0.841
POPTR_0004s11510 Populus trichocarpa POPTR_0004s11510 I 0.905
POPTR_0015s06980 Populus trichocarpa POPTR_0015s06980 I 0.887
POPTR_0017s13050 Populus trichocarpa POPTR_0017s13050 I 0.903
PRUPE_ppa007243mg Prunus persica PRUPE_ppa007243mg I 0.905
PRUPE_ppa014630mg Prunus persica PRUPE_ppa014630mg I 0.883
Sb03g001940 Sorghum bicolor Sb03g001940 I 0.836
Sb03g035350 Sorghum bicolor Sb03g035350 I 0.890
Sb08g021690 Sorghum bicolor Sb08g021690 I 0.848
Sb09g025340 Sorghum bicolor Sb09g025340 I 0.877
Si002496m.g Setaria italica Si002496m.g I 0.869
Si004564m.g Setaria italica Si004564m.g I 0.836
Si022811m.g Setaria italica Si022811m.g I 0.832
Si022833m.g Setaria italica Si022833m.g I 0.876
Solyc02g065800.1 Solanum lycopersicum Solyc02g065800.1 I 0.839
Solyc02g089020.1 Solanum lycopersicum Solyc02g089020.1 I 0.899
Solyc03g115010.1 Solanum lycopersicum Solyc03g115010.1 I 0.897
Solyc06g069460.1 Solanum lycopersicum Solyc06g069460.1 I 0.875
Solyc08g048370.2 Solanum lycopersicum Solyc08g048370.2 I 0.835
TCM_014288 Theobroma cacao TCM_014288 I 0.902
TCM_018809 Theobroma cacao TCM_018809 I 0.910
Traes_1AL_79B8C6F15 Triticum aestivum Traes_1AL_79B8C6F15 I 0.870
TRAES3BF002700090CFD_g Triticum aestivum TRAES3BF002700090CFD_g I 0.892
TRAES3BF014900010CFD_g Triticum aestivum TRAES3BF014900010CFD_g I 0.827
Traes_5BS_77558D2A3 Triticum aestivum Traes_5BS_77558D2A3 I 0.840
Traes_5DS_643EDFE5B Triticum aestivum Traes_5DS_643EDFE5B I 0.844
TCP2 Vitis vinifera VIT_10s0003g03910 I 0.826
PTF1 Vitis vinifera VIT_14s0068g00330 I 0.894
Ca_00482 Cicer arietinum Ca_00482 I 0.823
Ca_13216 Cicer arietinum Ca_13216 I 0.894
Ca_24196 Cicer arietinum Ca_24196 I 0.885
Ca_24948 Cicer arietinum Ca_24948 I 0.911
Cla010936 Citrullus lanatus Cla010936 I 0.897
Cla018836 Citrullus lanatus Cla018836 I 0.862
Cla019340 Citrullus lanatus Cla019340 I 0.886
Pm016049 Prunus mume Pm016049 I 0.905
Pm024946 Prunus mume Pm024946 I 0.878
29905.m000443 Ricinus communis 29905.m000443 I 0.880
30138.m003959 Ricinus communis 30138.m003959 I 0.888
cassava29094.valid.m1 Manihot esculenta cassava29094.valid.m1 I 0.905
cassava30483.valid.m1 Manihot esculenta cassava30483.valid.m1 I 0.904
cassava32529.m1 Manihot esculenta cassava32529.m1 I 0.866
cassava46272.m1 Manihot esculenta cassava46272.m1 I 0.841
Cucsa.113300 Cucumis sativus Cucsa.113300 I 0.865
Cucsa.198300 Cucumis sativus Cucsa.198300 I 0.883
Cucsa.215290 Cucumis sativus Cucsa.215290 I 0.905
mgf006703m Mimulus guttatus mgf006703m I 0.917
mgf007729m Mimulus guttatus mgf007729m I 0.893
mgf008626m Mimulus guttatus mgf008626m I 0.899
Aquca_002_00878 Aquilegia coerulea Aquca_002_00878 I 0.892
Aquca_057_00119 Aquilegia coerulea Aquca_057_00119 I 0.832
Bostr.13129s0160 Boechera stricta Bostr.13129s0160 I 0.890
Bostr.1460s0130 Boechera stricta Bostr.1460s0130 I 0.892
Bostr.26833s0140 Boechera stricta Bostr.26833s0140 I 0.878
Cagra.0083s0006 Capsella grandiflora Cagra.0083s0006 I 0.881
Cagra.1365s0013 Capsella grandiflora Cagra.1365s0013 I 0.870
Cagra.3823s0015 Capsella grandiflora Cagra.3823s0015 I 0.897
Carubv10001730m.g Capsella rubella Carubv10001730m.g I 0.867
Carubv10014042m.g Capsella rubella Carubv10014042m.g I 0.884
Carubv10026656m.g Capsella rubella Carubv10026656m.g I 0.881
Ciclev10011887m.g Citrus clementina Ciclev10011887m.g I 0.897
Ciclev10014986m.g Citrus clementina Ciclev10014986m.g I 0.823
Ciclev10020626m.g Citrus clementina Ciclev10020626m.g I 0.892
Eucgr.B00608 Eucalyptus grandis Eucgr.B00608 I 0.883
Eucgr.I02038 Eucalyptus grandis Eucgr.I02038 I 0.897
evm.TU.supercontig_14.188 Carica papaya evm.TU.supercontig_14.188 I 0.903
evm.TU.supercontig_94.62 Carica papaya evm.TU.supercontig_94.62 I 0.887
gene04255-v1.0-hybrid Fragaria vesca gene04255-v1.0-hybrid I 0.897
gene26101-v1.0-hybrid Fragaria vesca gene26101-v1.0-hybrid I 0.884
Gorai.001G076700 Gossypium raimondii Gorai.001G076700 I 0.902
Gorai.006G009800 Gossypium raimondii Gorai.006G009800 I 0.905
Gorai.008G199700 Gossypium raimondii Gorai.008G199700 I 0.904
Gorai.012G048500 Gossypium raimondii Gorai.012G048500 I 0.900
Lus10032984.g Linum usitatissimum Lus10032984.g I 0.880
Lus10034679.g Linum usitatissimum Lus10034679.g I 0.876
MDP0000120671 Malus domestica MDP0000120671 I 0.872
MDP0000130524 Malus domestica MDP0000130524 I 0.911
MDP0000155433 Malus domestica MDP0000155433 I 0.874
MDP0000199422 Malus domestica MDP0000199422 I 0.911
MDP0000202241 Malus domestica MDP0000202241 I 0.908
MDP0000253526 Malus domestica MDP0000253526 I 0.906
MDP0000320363 Malus domestica MDP0000320363 I 0.916
MDP0000373350 Malus domestica MDP0000373350 I 0.911
MDP0000388684 Malus domestica MDP0000388684 I 0.870
MDP0000594000 Malus domestica MDP0000594000 I 0.906
MDP0000617746 Malus domestica MDP0000617746 I 0.906
MDP0000692406 Malus domestica MDP0000692406 I 0.901
orange1.1g009938m.g Citrus sinensis orange1.1g009938m.g I 0.823
orange1.1g015799m.g Citrus sinensis orange1.1g015799m.g I 0.897
orange1.1g017725m.g Citrus sinensis orange1.1g017725m.g I 0.892
Pavir.Ca01337 Panicum virgatum Pavir.Ca01337 I 0.874
Pavir.Ca02949 Panicum virgatum Pavir.Ca02949 I 0.841
Pavir.Cb00038 Panicum virgatum Pavir.Cb00038 I 0.859
Pavir.Ea02793 Panicum virgatum Pavir.Ea02793 I 0.890
Pavir.J03475 Panicum virgatum Pavir.J03475 I 0.837
Pavir.J15913 Panicum virgatum Pavir.J15913 I 0.884
Pavir.J24681 Panicum virgatum Pavir.J24681 I 0.827
Pavir.J35609 Panicum virgatum Pavir.J35609 I 0.881
Pavir.J37910 Panicum virgatum Pavir.J37910 I 0.850
SapurV1A.0323s0010 Salix purpurea SapurV1A.0323s0010 I 0.904
SapurV1A.0546s0080 Salix purpurea SapurV1A.0546s0080 I 0.893
SapurV1A.0795s0080 Salix purpurea SapurV1A.0795s0080 I 0.908
SapurV1A.0901s0090 Salix purpurea SapurV1A.0901s0090 I 0.904
SapurV1A.2245s0020 Salix purpurea SapurV1A.2245s0020 I 0.893
SapurV1A.4442s0010 Salix purpurea SapurV1A.4442s0010 I 0.908
SapurV1A.4443s0010 Salix purpurea SapurV1A.4443s0010 I 0.908
Thhalv10004440m.g Eutrema salsugineum Thhalv10004440m.g I 0.878
Thhalv10014467m.g Eutrema salsugineum Thhalv10014467m.g I 0.879
Thhalv10021021m.g Eutrema salsugineum Thhalv10021021m.g I 0.894
PK12847.1 Cannabis sativa PK12847.1 I 0.837
PK17676.1 Cannabis sativa PK17676.1 I 0.838
chr4.CM0500.330.nd Lotus japonicus chr4.CM0500.330.nd I 0.880
LjSGA_022391.1 Lotus japonicus LjSGA_022391.1 I 0.900
PDK_20s1781021g001 Phoenix dactylifera PDK_20s1781021g001 I 0.891
PDK_20s1781021g002 Phoenix dactylifera PDK_20s1781021g002 I 0.878