MDP0000594000 (Malus domestica)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 MDP0000594000 T344954_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.916 0.468
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.909 0.477
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.909 0.477
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.903 0.459
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.903 0.459
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.893 0.459
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.890 0.459
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.843 0.385
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.825 0.367
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.823 0.385
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.823 0.385
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.823 0.385
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000594000 TCP 60 168

Links

Other TCP family TFs
Other Malus domestica TFs

233 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCP3 Arabidopsis thaliana AT1G53230 D 0.823
TCP13 Arabidopsis thaliana AT3G02150 D 0.909
TCP17 Arabidopsis thaliana AT5G08070 D 0.903
TCP5 Arabidopsis thaliana AT5G60970 D 0.890
TCP5 Arabidopsis lyrata fgenesh2_kg.8__2066__AT5G60970.1 D 0.893
OS01G0213800 Oryza sativa OS01G0213800 D 0.825
PK10344.1 Cannabis sativa PK10344.1 D 0.916
LjT20A21.20.nc Lotus japonicus LjT20A21.20.nc D 0.843
AC205574.3_FG006 Zea mays AC205574.3_FG006 I 0.829
AMTR_s00092p00113360 Amborella trichopoda AMTR_s00092p00113360 I 0.832
AMTR_s00154p00072430 Amborella trichopoda AMTR_s00154p00072430 I 0.912
BGIOSGA000770 Oryza indica BGIOSGA000770 I 0.888
PCF5 Oryza indica BGIOSGA002128 I 0.825
BGIOSGA020173 Oryza indica BGIOSGA020173 I 0.871
Bo2g161240 Brassica oleracea Bo2g161240 I 0.883
Bo3g004670 Brassica oleracea Bo3g004670 I 0.917
Bo3g055460 Brassica oleracea Bo3g055460 I 0.907
Bo5g152840 Brassica oleracea Bo5g152840 I 0.903
Bo7g098260 Brassica oleracea Bo7g098260 I 0.900
Bra001032 Brassica rapa Bra001032 I 0.909
Bra005967 Brassica rapa Bra005967 I 0.915
Bra012990 Brassica rapa Bra012990 I 0.900
Bra029344 Brassica rapa Bra029344 I 0.883
Bra039158 Brassica rapa Bra039158 I 0.900
BRADI1G06460 Brachypodium distachyon BRADI1G06460 I 0.828
BRADI2G06890 Brachypodium distachyon BRADI2G06890 I 0.833
BRADI2G20060 Brachypodium distachyon BRADI2G20060 I 0.883
BRADI2G50687 Brachypodium distachyon BRADI2G50687 I 0.898
BRADI4G01547 Brachypodium distachyon BRADI4G01547 I 0.837
F775_18470 Aegilops tauschii F775_18470 I 0.896
PTF1 Arabidopsis lyrata fgenesh2_kg.3__146__AT3G02150.2 I 0.909
TCP17 Arabidopsis lyrata fgenesh2_kg.6__773__AT5G08070.1 I 0.916
GLYMA04G32324 Glycine max GLYMA04G32324 I 0.893
GLYMA05G00300 Glycine max GLYMA05G00300 I 0.871
GLYMA05G27367 Glycine max GLYMA05G27367 I 0.828
GLYMA06G22240 Glycine max GLYMA06G22240 I 0.887
GLYMA08G10350 Glycine max GLYMA08G10350 I 0.830
GLYMA08G27155 Glycine max GLYMA08G27155 I 0.906
GLYMA12G35720 Glycine max GLYMA12G35720 I 0.826
GLYMA13G29160 Glycine max GLYMA13G29160 I 0.827
GLYMA15G09910 Glycine max GLYMA15G09910 I 0.827
GLYMA17G08761 Glycine max GLYMA17G08761 I 0.899
GLYMA18G50371 Glycine max GLYMA18G50371 I 0.900
GLYMA19G03786 Glycine max GLYMA19G03786 I 0.908
GRMZM2G015037 Zea mays GRMZM2G015037 I 0.831
GRMZM2G035944 Zea mays GRMZM2G035944 I 0.891
GRMZM2G120151 Zea mays GRMZM2G120151 I 0.883
GRMZM2G166946 Zea mays GRMZM2G166946 I 0.897
GRMZM2G180568 Zea mays GRMZM2G180568 I 0.849
GSMUA_Achr4G22960_001 Musa acuminata GSMUA_Achr4G22960_001 I 0.829
GSMUA_Achr4G31520_001 Musa acuminata GSMUA_Achr4G31520_001 I 0.829
GSMUA_Achr4G32850_001 Musa acuminata GSMUA_Achr4G32850_001 I 0.881
GSMUA_Achr6G27420_001 Musa acuminata GSMUA_Achr6G27420_001 I 0.894
GSMUA_Achr7G01160_001 Musa acuminata GSMUA_Achr7G01160_001 I 0.835
LPERR01G06830 Leersia perrieri LPERR01G06830 I 0.832
LPERR01G27380 Leersia perrieri LPERR01G27380 I 0.900
LPERR03G30870 Leersia perrieri LPERR03G30870 I 0.829
LPERR05G18480 Leersia perrieri LPERR05G18480 I 0.889
LPERR12G15920 Leersia perrieri LPERR12G15920 I 0.822
MLOC_10214 Hordeum vulgare MLOC_10214 I 0.831
MLOC_14785 Hordeum vulgare MLOC_14785 I 0.899
MLOC_68285 Hordeum vulgare MLOC_68285 I 0.829
MLOC_70266 Hordeum vulgare MLOC_70266 I 0.883
MLOC_72581 Hordeum vulgare MLOC_72581 I 0.835
MTR_3g026050 Medicago truncatula MTR_3g026050 I 0.885
MTR_4g109660 Medicago truncatula MTR_4g109660 I 0.895
MTR_6g015350 Medicago truncatula MTR_6g015350 I 0.871
OBART01G07230 Oryza barthii OBART01G07230 I 0.825
OBART01G31910 Oryza barthii OBART01G31910 I 0.888
OBART05G22490 Oryza barthii OBART05G22490 I 0.828
OGLUM01G08160 Oryza glumaepatula OGLUM01G08160 I 0.825
OGLUM01G36040 Oryza glumaepatula OGLUM01G36040 I 0.892
OGLUM05G23780 Oryza glumaepatula OGLUM05G23780 I 0.871
OLONG_003082 Oryza longistaminata OLONG_003082 I 0.828
OMERI01G07200 Oryza meridionalis OMERI01G07200 I 0.829
OMERI01G28950 Oryza meridionalis OMERI01G28950 I 0.887
OMERI05G20240 Oryza meridionalis OMERI05G20240 I 0.872
ONIVA01G09270 Oryza nivara ONIVA01G09270 I 0.828
ONIVA01G36230 Oryza nivara ONIVA01G36230 I 0.888
ONIVA05G23460 Oryza nivara ONIVA05G23460 I 0.871
OPUNC01G06940 Oryza punctata OPUNC01G06940 I 0.825
OPUNC01G30950 Oryza punctata OPUNC01G30950 I 0.888
OPUNC05G20130 Oryza punctata OPUNC05G20130 I 0.891
ORGLA01G0062300 Oryza glaberrima ORGLA01G0062300 I 0.825
ORGLA01G0259400 Oryza glaberrima ORGLA01G0259400 I 0.888
ORGLA03G0335700 Oryza glaberrima ORGLA03G0335700 I 0.831
ORGLA05G0197200 Oryza glaberrima ORGLA05G0197200 I 0.871
ORUFI01G07780 Oryza rufipogon ORUFI01G07780 I 0.825
ORUFI01G35100 Oryza rufipogon ORUFI01G35100 I 0.888
ORUFI05G23910 Oryza rufipogon ORUFI05G23910 I 0.873
OS01G0763200 Oryza sativa OS01G0763200 I 0.888
OS05G0513100 Oryza sativa OS05G0513100 I 0.871
PGSC0003DMG400001362 Solanum tuberosum PGSC0003DMG400001362 I 0.905
PGSC0003DMG400004082 Solanum tuberosum PGSC0003DMG400004082 I 0.877
PGSC0003DMG400019904 Solanum tuberosum PGSC0003DMG400019904 I 0.870
PGSC0003DMG400024632 Solanum tuberosum PGSC0003DMG400024632 I 0.913
PGSC0003DMG400026568 Solanum tuberosum PGSC0003DMG400026568 I 0.855
POPTR_0004s06440 Populus trichocarpa POPTR_0004s06440 I 0.839
POPTR_0004s11510 Populus trichocarpa POPTR_0004s11510 I 0.910
POPTR_0011s02350 Populus trichocarpa POPTR_0011s02350 I 0.846
POPTR_0015s06980 Populus trichocarpa POPTR_0015s06980 I 0.897
POPTR_0017s13050 Populus trichocarpa POPTR_0017s13050 I 0.912
PRUPE_ppa004612mg Prunus persica PRUPE_ppa004612mg I 0.830
PRUPE_ppa007243mg Prunus persica PRUPE_ppa007243mg I 0.909
PRUPE_ppa014630mg Prunus persica PRUPE_ppa014630mg I 0.886
Sb03g001940 Sorghum bicolor Sb03g001940 I 0.829
Sb03g035350 Sorghum bicolor Sb03g035350 I 0.892
Sb08g021690 Sorghum bicolor Sb08g021690 I 0.833
Sb09g025340 Sorghum bicolor Sb09g025340 I 0.880
SELMODRAFT_104521 Selaginella moellendorffii SELMODRAFT_104521 I 0.826
SELMODRAFT_89227 Selaginella moellendorffii SELMODRAFT_89227 I 0.826
Si002496m.g Setaria italica Si002496m.g I 0.893
Si004564m.g Setaria italica Si004564m.g I 0.829
Si022833m.g Setaria italica Si022833m.g I 0.883
Solyc02g065800.1 Solanum lycopersicum Solyc02g065800.1 I 0.842
Solyc02g089020.1 Solanum lycopersicum Solyc02g089020.1 I 0.910
Solyc03g115010.1 Solanum lycopersicum Solyc03g115010.1 I 0.911
Solyc06g069460.1 Solanum lycopersicum Solyc06g069460.1 I 0.891
Solyc08g048370.2 Solanum lycopersicum Solyc08g048370.2 I 0.870
Solyc08g048390.1 Solanum lycopersicum Solyc08g048390.1 I 0.852
TCM_014288 Theobroma cacao TCM_014288 I 0.911
TCM_018809 Theobroma cacao TCM_018809 I 0.912
TCM_029442 Theobroma cacao TCM_029442 I 0.832
Traes_1AL_79B8C6F15 Triticum aestivum Traes_1AL_79B8C6F15 I 0.877
Traes_2AL_EA60A06AC Triticum aestivum Traes_2AL_EA60A06AC I 0.824
TRAES3BF002700090CFD_g Triticum aestivum TRAES3BF002700090CFD_g I 0.892
TRAES3BF014900010CFD_g Triticum aestivum TRAES3BF014900010CFD_g I 0.829
Traes_5BS_77558D2A3 Triticum aestivum Traes_5BS_77558D2A3 I 0.835
Traes_5DS_643EDFE5B Triticum aestivum Traes_5DS_643EDFE5B I 0.835
TCP2 Vitis vinifera VIT_10s0003g03910 I 0.834
PTF1 Vitis vinifera VIT_14s0068g00330 I 0.902
Ca_00482 Cicer arietinum Ca_00482 I 0.832
Ca_13216 Cicer arietinum Ca_13216 I 0.893
Ca_24196 Cicer arietinum Ca_24196 I 0.883
Ca_24948 Cicer arietinum Ca_24948 I 0.913
Cla010936 Citrullus lanatus Cla010936 I 0.918
Cla018836 Citrullus lanatus Cla018836 I 0.861
Cla019340 Citrullus lanatus Cla019340 I 0.884
Pm010440 Prunus mume Pm010440 I 0.830
Pm016049 Prunus mume Pm016049 I 0.909
Pm024946 Prunus mume Pm024946 I 0.885
29905.m000443 Ricinus communis 29905.m000443 I 0.902
30138.m003959 Ricinus communis 30138.m003959 I 0.899
cassava29094.valid.m1 Manihot esculenta cassava29094.valid.m1 I 0.911
cassava30483.valid.m1 Manihot esculenta cassava30483.valid.m1 I 0.910
cassava32529.m1 Manihot esculenta cassava32529.m1 I 0.880
cassava46272.m1 Manihot esculenta cassava46272.m1 I 0.849
cassava7638.valid.m1 Manihot esculenta cassava7638.valid.m1 I 0.828
Cucsa.047860 Cucumis sativus Cucsa.047860 I 0.832
Cucsa.113300 Cucumis sativus Cucsa.113300 I 0.865
Cucsa.198300 Cucumis sativus Cucsa.198300 I 0.887
Cucsa.215290 Cucumis sativus Cucsa.215290 I 0.918
mgf006703m Mimulus guttatus mgf006703m I 0.918
mgf007729m Mimulus guttatus mgf007729m I 0.897
mgf008626m Mimulus guttatus mgf008626m I 0.908
mgf016959m Mimulus guttatus mgf016959m I 0.839
mgf021685m Mimulus guttatus mgf021685m I 0.824
mgf024988m Mimulus guttatus mgf024988m I 0.830
Aquca_002_00878 Aquilegia coerulea Aquca_002_00878 I 0.918
Aquca_057_00119 Aquilegia coerulea Aquca_057_00119 I 0.834
Bostr.13129s0160 Boechera stricta Bostr.13129s0160 I 0.895
Bostr.1460s0130 Boechera stricta Bostr.1460s0130 I 0.901
Bostr.26833s0140 Boechera stricta Bostr.26833s0140 I 0.892
Cagra.0083s0006 Capsella grandiflora Cagra.0083s0006 I 0.890
Cagra.1365s0013 Capsella grandiflora Cagra.1365s0013 I 0.907
Cagra.3678s0010 Capsella grandiflora Cagra.3678s0010 I 0.827
Cagra.3823s0015 Capsella grandiflora Cagra.3823s0015 I 0.907
Carubv10001730m.g Capsella rubella Carubv10001730m.g I 0.905
Carubv10011113m.g Capsella rubella Carubv10011113m.g I 0.834
Carubv10014042m.g Capsella rubella Carubv10014042m.g I 0.906
Carubv10026656m.g Capsella rubella Carubv10026656m.g I 0.890
Ciclev10011887m.g Citrus clementina Ciclev10011887m.g I 0.902
Ciclev10014986m.g Citrus clementina Ciclev10014986m.g I 0.832
Ciclev10015871m.g Citrus clementina Ciclev10015871m.g I 0.822
Ciclev10020626m.g Citrus clementina Ciclev10020626m.g I 0.907
Eucgr.B00608 Eucalyptus grandis Eucgr.B00608 I 0.891
Eucgr.I02038 Eucalyptus grandis Eucgr.I02038 I 0.902
evm.TU.supercontig_14.188 Carica papaya evm.TU.supercontig_14.188 I 0.910
evm.TU.supercontig_17.1 Carica papaya evm.TU.supercontig_17.1 I 0.826
evm.TU.supercontig_94.62 Carica papaya evm.TU.supercontig_94.62 I 0.906
gene04255-v1.0-hybrid Fragaria vesca gene04255-v1.0-hybrid I 0.907
gene26101-v1.0-hybrid Fragaria vesca gene26101-v1.0-hybrid I 0.888
Gorai.001G076700 Gossypium raimondii Gorai.001G076700 I 0.914
Gorai.006G009800 Gossypium raimondii Gorai.006G009800 I 0.920
Gorai.008G199700 Gossypium raimondii Gorai.008G199700 I 0.911
Gorai.009G153900 Gossypium raimondii Gorai.009G153900 I 0.824
Gorai.012G048500 Gossypium raimondii Gorai.012G048500 I 0.902
Lus10023297.g Linum usitatissimum Lus10023297.g I 0.834
Lus10032984.g Linum usitatissimum Lus10032984.g I 0.901
Lus10034679.g Linum usitatissimum Lus10034679.g I 0.889
MDP0000120671 Malus domestica MDP0000120671 I 0.882
MDP0000130524 Malus domestica MDP0000130524 I 0.947
MDP0000155433 Malus domestica MDP0000155433 I 0.880
MDP0000199422 Malus domestica MDP0000199422 I 0.947
MDP0000202241 Malus domestica MDP0000202241 I 0.937
MDP0000253526 Malus domestica MDP0000253526 I 0.940
MDP0000320363 Malus domestica MDP0000320363 I 0.931
MDP0000373350 Malus domestica MDP0000373350 I 0.947
MDP0000388684 Malus domestica MDP0000388684 I 0.910
MDP0000534647 Malus domestica MDP0000534647 I 0.906
MDP0000617746 Malus domestica MDP0000617746 I 0.940
MDP0000692406 Malus domestica MDP0000692406 I 0.904
MDP0000927314 Malus domestica MDP0000927314 I 0.832
orange1.1g009938m.g Citrus sinensis orange1.1g009938m.g I 0.832
orange1.1g015799m.g Citrus sinensis orange1.1g015799m.g I 0.902
orange1.1g017725m.g Citrus sinensis orange1.1g017725m.g I 0.907
orange1.1g019898m.g Citrus sinensis orange1.1g019898m.g I 0.822
Pavir.Ca01337 Panicum virgatum Pavir.Ca01337 I 0.894
Pavir.Cb00038 Panicum virgatum Pavir.Cb00038 I 0.847
Pavir.Ea02793 Panicum virgatum Pavir.Ea02793 I 0.892
Pavir.J03475 Panicum virgatum Pavir.J03475 I 0.829
Pavir.J15913 Panicum virgatum Pavir.J15913 I 0.898
Pavir.J24681 Panicum virgatum Pavir.J24681 I 0.840
Pavir.J35609 Panicum virgatum Pavir.J35609 I 0.888
Pavir.J37910 Panicum virgatum Pavir.J37910 I 0.829
SapurV1A.0232s0150 Salix purpurea SapurV1A.0232s0150 I 0.847
SapurV1A.0323s0010 Salix purpurea SapurV1A.0323s0010 I 0.912
SapurV1A.0546s0080 Salix purpurea SapurV1A.0546s0080 I 0.895
SapurV1A.0795s0080 Salix purpurea SapurV1A.0795s0080 I 0.912
SapurV1A.0901s0090 Salix purpurea SapurV1A.0901s0090 I 0.912
SapurV1A.0971s0180 Salix purpurea SapurV1A.0971s0180 I 0.839
SapurV1A.1394s0060 Salix purpurea SapurV1A.1394s0060 I 0.839
SapurV1A.2245s0020 Salix purpurea SapurV1A.2245s0020 I 0.895
SapurV1A.4442s0010 Salix purpurea SapurV1A.4442s0010 I 0.912
SapurV1A.4443s0010 Salix purpurea SapurV1A.4443s0010 I 0.912
Thhalv10004440m.g Eutrema salsugineum Thhalv10004440m.g I 0.892
Thhalv10014467m.g Eutrema salsugineum Thhalv10014467m.g I 0.895
Thhalv10021021m.g Eutrema salsugineum Thhalv10021021m.g I 0.905
PK17676.1 Cannabis sativa PK17676.1 I 0.877
chr4.CM0500.330.nd Lotus japonicus chr4.CM0500.330.nd I 0.888
LjSGA_022391.1 Lotus japonicus LjSGA_022391.1 I 0.910
PDK_20s1781021g001 Phoenix dactylifera PDK_20s1781021g001 I 0.889
PDK_20s1781021g002 Phoenix dactylifera PDK_20s1781021g002 I 0.899