OMERI12G12970 (Oryza meridionalis)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03638 (TCR) IPR005172 OMERI12G12970 T345633_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.845
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.810
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.810
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.810
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.793
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.793
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.793
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.793
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.759
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.741
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.603
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.517
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.500
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.500
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.483
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.483
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.483
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.483
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.466
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.466
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.466
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.466
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.466
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.466
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.466
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.448
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.448
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.448
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI12G12970.1 TCR/CxC 459 496
OMERI12G12970.1 TCR/CxC 530 549
OMERI12G12970.2 TCR/CxC 354 391
OMERI12G12970.2 TCR/CxC 425 444

Links

Other TCR/CxC family TFs
Other Oryza meridionalis TFs

1214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Otx2 Mus musculus ENSMUSG00000021848 D
unc-30 Caenorhabditis elegans WBGene00006766 I
OTX2 Myotis lucifugus ENSMLUG00000022591 I
pitx1 Gasterosteus aculeatus ENSGACG00000016483 I
TPRX1 Homo sapiens ENSG00000178928 I
ENSCSAG00000014537 Chlorocebus sabaeus ENSCSAG00000014537 I
OTX2 Choloepus hoffmanni ENSCHOG00000013827 I
Ocbimv22035611m.g Octopus bimaculoides Ocbimv22035611m.g I
Hsal_07660--XP_394161.1_APIME Harpegnathos saltator Hsal_07660--XP_394161.1_APIME I
Cmyd_10017639 Chelonia mydas Cmyd_10017639 I
HMEL015659 Heliconius melpomene HMEL015659 I
CLEC006124 Cimex lectularius CLEC006124 N
LDEC016519 Leptinotarsa decemlineata LDEC016519 N
LDEC023625 Leptinotarsa decemlineata LDEC023625 N
Sjc_0128760 Schistosoma japonicum Sjc_0128760 N
Alligator_sinensis_CCG004399.1 Alligator sinensis Alligator_sinensis_CCG004399.1 N
YQE_12574 Dendroctonus ponderosae YQE_12574 N
XP_002164986.1 Hydra magnipapillata XP_002164986.1 N
AEPI010431 Anopheles epiroticus AEPI010431 N
AALB006874 Anopheles albimanus AALB006874 N
GK22279 Drosophila willistoni FBgn0224264 N
ASIS015315 Anopheles sinensis ASIS015315 N
ANCCAN_27245 Ancylostoma caninum ANCCAN_27245 N
ANCCEY_04348 Ancylostoma ceylanicum ANCCEY_04348 N
ANCCEY_11895 Ancylostoma ceylanicum ANCCEY_11895 N
GPLIN_000181000 Globodera pallida GPLIN_000181000 N
Hba_17538 Heterorhabditis bacteriophora Hba_17538 N
OESDEN_16215 Oesophagostomum dentatum OESDEN_16215 N
SMTD_0001972301 Schistosoma mattheei SMTD_0001972301 N
snap_masked-nMf.1.1.scaf16485-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf16485-processed-gene-0.2 N
snap_masked-nMf.1.1.scaf19847-processed-gene-0.1 Meloidogyne floridensis snap_masked-nMf.1.1.scaf19847-processed-gene-0.1 N
TELCIR_18721 Teladorsagia circumcincta TELCIR_18721 N
TTRE_0000079401 Trichuris trichiura TTRE_0000079401 N
LEUTX Homo sapiens ENSG00000213921 N
WUBG_02624 Wuchereria bancrofti WUBG_02624 N
ACEP26305 Atta cephalotes ACEP26305 N
CBG15039 Caenorhabditis briggsae CBG15039 N
CGI_10007832 Crassostrea gigas CGI_10007832 N
CJA11256 Caenorhabditis japonica CJA11256 N
EFV55958 Trichinella spiralis EFV55958 N
LEUTX Bos taurus ENSBTAG00000046425 N
LEUTX Canis familiaris ENSCAFG00000028552 N
DPRX Choloepus hoffmanni ENSCHOG00000010851 N
ENSCJAG00000011381 Callithrix jacchus ENSCJAG00000011381 N
ENSCSAG00000003788 Chlorocebus sabaeus ENSCSAG00000003788 N
LEUTX Felis catus ENSFCAG00000023272 N
NEMVEDRAFT_v1g48861 Nematostella vectensis NEMVEDRAFT_v1g48861 N
ENSLAFG00000000420 Loxodonta africana ENSLAFG00000000420 N
DMBX1 Monodelphis domestica ENSMODG00000001963 N
ENSOARG00000006291 Ovis aries ENSOARG00000006291 N
ENSOGAG00000034150 Otolemur garnettii ENSOGAG00000034150 N
ENSPANG00000010570 Papio anubis ENSPANG00000010570 N
LEUTX Pan troglodytes ENSPTRG00000033892 N
ENSPVAG00000005359 Pteropus vampyrus ENSPVAG00000005359 N
ENSSSCG00000002985 Sus scrofa ENSSSCG00000002985 N
ENSTTRG00000007283 Tursiops truncatus ENSTTRG00000007283 N
WUBG_02192 Wuchereria bancrofti WUBG_02192 N
GB50469 Apis mellifera GB50469 N
ISCW006446 Ixodes scapularis ISCW006446 N