VDBG_00821 (Verticillium albo atrum)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 VDBG_00821 T357936_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
clr-1
M02626_2.00 		Neurospora crassa
NNNHTCCGGAWNN
NNWTCCGGADNNN		 PBM
Weirauch et al.(2014)
pTH8805 		0.683 1.000
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VDBG_00821T0 Zinc cluster 98 135

Links

Other Zinc cluster family TFs
Other Verticillium albo atrum TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LFY Arabidopsis thaliana AT5G61850 D
Carubv10028602m.g Capsella rubella Carubv10028602m.g I
TCM_014768 Theobroma cacao TCM_014768 I
Traes_2AL_83D0D0C3F Triticum aestivum Traes_2AL_83D0D0C3F I
Traes_2BL_8DEC0EFBF Triticum aestivum Traes_2BL_8DEC0EFBF I
LFY Vitis vinifera VIT_17s0000g00150 I
Ca_01386 Cicer arietinum Ca_01386 I
Cla019619 Citrullus lanatus Cla019619 I
30147.m014401 Ricinus communis 30147.m014401 I
cassava19992.m1 Manihot esculenta cassava19992.m1 I
cassava40548.m1 Manihot esculenta cassava40548.m1 I
Cucsa.156880 Cucumis sativus Cucsa.156880 I
mgf013601m Mimulus guttatus mgf013601m I
mgf020579m Mimulus guttatus mgf020579m I
Aquca_043_00044 Aquilegia coerulea Aquca_043_00044 I
Bostr.26833s0050 Boechera stricta Bostr.26833s0050 I
Cagra.4553s0022 Capsella grandiflora Cagra.4553s0022 I
Solyc03g118160.1 Solanum lycopersicum Solyc03g118160.1 I
Ciclev10033942m.g Citrus clementina Ciclev10033942m.g I
Eucgr.K02192 Eucalyptus grandis Eucgr.K02192 I
gene30683-v1.0-hybrid Fragaria vesca gene30683-v1.0-hybrid I
gene33406-v1.0-hybrid Fragaria vesca gene33406-v1.0-hybrid I
Gorai.001G053900 Gossypium raimondii Gorai.001G053900 I
Lus10016732.g Linum usitatissimum Lus10016732.g I
Lus10022427.g Linum usitatissimum Lus10022427.g I
orange1.1g044766m.g Citrus sinensis orange1.1g044766m.g I
Pavir.Ga00621 Panicum virgatum Pavir.Ga00621 I
Pavir.Gb00795 Panicum virgatum Pavir.Gb00795 I
SapurV1A.2394s0010 Salix purpurea SapurV1A.2394s0010 I
Thhalv10005606m.g Eutrema salsugineum Thhalv10005606m.g I
chr1.CM0094.750.nd Lotus japonicus chr1.CM0094.750.nd I
MTR_3g098560 Medicago truncatula MTR_3g098560 I
AMTR_s00016p00083040 Amborella trichopoda AMTR_s00016p00083040 I
OSL Oryza indica BGIOSGA014428 I
Bo2g161690 Brassica oleracea Bo2g161690 I
Bo3g109270 Brassica oleracea Bo3g109270 I
Bra019619 Brassica rapa Bra019619 I
Bra029305 Brassica rapa Bra029305 I
BRADI5G20340 Brachypodium distachyon BRADI5G20340 I
GLYMA04G37900 Glycine max GLYMA04G37900 I
GLYMA06G17170 Glycine max GLYMA06G17170 I
GRMZM2G098813 Zea mays GRMZM2G098813 I
GRMZM2G180190 Zea mays GRMZM2G180190 I
GSMUA_Achr6G16390_001 Musa acuminata GSMUA_Achr6G16390_001 I
LPERR04G19570 Leersia perrieri LPERR04G19570 I
MLOC_14305 Hordeum vulgare MLOC_14305 I
LFY Arabidopsis lyrata Al_scaffold_0008_2690 I
OB04G30790 Oryza brachyantha OB04G30790 I
OBART04G23870 Oryza barthii OBART04G23870 I
OGLUM04G23830 Oryza glumaepatula OGLUM04G23830 I
OLONG_021167 Oryza longistaminata OLONG_021167 I
OMERI04G19760 Oryza meridionalis OMERI04G19760 I
ONIVA04G23030 Oryza nivara ONIVA04G23030 I
OPUNC04G21410 Oryza punctata OPUNC04G21410 I
ORGLA04G0204600 Oryza glaberrima ORGLA04G0204600 I
ORUFI04G25610 Oryza rufipogon ORUFI04G25610 I
FL Oryza sativa OS04G0598300 I
FL Populus trichocarpa POPTR_0015s11820 I
PRUPE_ppa006372mg Prunus persica PRUPE_ppa006372mg I
Si011756m.g Setaria italica Si011756m.g I