5688_YDR421W (Saccharomyces paradoxus)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 5688_YDR421W T390864_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARO80
M01577_2.00 		Saccharomyces cerevisiae
NNCGGNDNN
NNHNCCGNN		 PBM
Zhu et al.(2009)
Aro80 		0.641 0.846
ARO80
M08656_2.00 		Saccharomyces cerevisiae
CGGHHVNBNDCGG
CCGHNVNBDDCCG		 Misc
DeBoer et al.(2011)
YDR421W_1509 		0.641 0.846
ARO80
M08657_2.00 		Saccharomyces cerevisiae
CGGYWANNNNCGGYWANNNNCGGYWA
TWRCCGNNNNTWRCCGNNNNTWRCCG		 Misc
DeBoer et al.(2011)
YDR421W_725 		0.641 0.846
ARO80
M08658_2.00 		Saccharomyces cerevisiae
BNNNNNBCTCGGBWABDNNDN
NHNNHVTWVCCGAGVNNNNNV		 Misc
DeBoer et al.(2011)
YDR421W_877 		0.641 0.846
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
5688_YDR421W Zinc cluster 23 67

Links

Other Zinc cluster family TFs
Other Saccharomyces paradoxus TFs

3 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD23 Arabidopsis thaliana AT3G26620 D
LBD24 Arabidopsis thaliana AT3G26660 I
Thhalv10015971m.g Eutrema salsugineum Thhalv10015971m.g I
Thhalv10005497m.g Eutrema salsugineum Thhalv10005497m.g I
evm.TU.supercontig_1.335 Carica papaya evm.TU.supercontig_1.335 I
Eucgr.A02814 Eucalyptus grandis Eucgr.A02814 I
Carubv10018979m.g Capsella rubella Carubv10018979m.g I
Bostr.0556s0333 Boechera stricta Bostr.0556s0333 I
cassava35977.valid.m1 Manihot esculenta cassava35977.valid.m1 I
cassava11118.m1 Manihot esculenta cassava11118.m1 I
scaffold_500562.1 Arabidopsis lyrata scaffold_500562.1 I
POPTR_0012s13910 Populus trichocarpa POPTR_0012s13910 I
Bra032938 Brassica rapa Bra032938 I
Bra025217 Brassica rapa Bra025217 I
Bo7g083780 Brassica oleracea Bo7g083780 I
Bo3g065910 Brassica oleracea Bo3g065910 I
Bo00285s360 Brassica oleracea Bo00285s360 I
TCM_035123 Theobroma cacao TCM_035123 N