XP_002490850.1 (Pichia pastoris)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 XP_002490850.1 T392293_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GAL4
M01599_2.00 		Saccharomyces cerevisiae
NYCGGVN
NBCCGRN		 PBM
Zhu et al.(2009)
Gal4 		0.540 0.641
GAL4
M07559_2.00 		Saccharomyces cerevisiae
GGANVRCW
WGYBNTCC		 ChIP-exo
Rhee et al.(2011)
Gal4_1 		0.540 0.641
GAL4
M07560_2.00 		Saccharomyces cerevisiae
GGRAAARGGTC
GACCYTTTYCC		 ChIP-exo
Rhee et al.(2011)
Gal4_2 		0.540 0.641
GAL4
M07561_2.00 		Saccharomyces cerevisiae
AGAACAA
TTGTTCT		 ChIP-exo
Rhee et al.(2011)
Gal4_3 		0.540 0.641
GAL4
M08698_2.00 		Saccharomyces cerevisiae
CGGVSNNVTNYNSNCCG
CGGNSNRNABNNSBCCG		 Misc
DeBoer et al.(2011)
YPL248C_1510 		0.540 0.641
GAL4
M11487_2.00 		Saccharomyces cerevisiae
BYWCGGWSVAVWGHBVBCCGDDV
BHHCGGVBVDCWBTBSWCCGWRV		 Transfac
Matys et al.(2006)
F$GAL4_01 		0.540 0.641
GAL4
M11488_2.00 		Saccharomyces cerevisiae
HKYWCGGHVVRVWGHBNBCCGD
HCGGVNVDCWBYBBDCCGWRMD		 Transfac
Matys et al.(2006)
F$GAL4_C 		0.540 0.641
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002490850.1 Zinc cluster 42 80

Links

Other Zinc cluster family TFs
Other Pichia pastoris TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.F04126 Eucalyptus grandis Eucgr.F04126 N
Cla012103 Citrullus lanatus Cla012103 N
Pm022190 Prunus mume Pm022190 N
29728.m000821 Ricinus communis 29728.m000821 N
cassava25358.m1 Manihot esculenta cassava25358.m1 N
Cucsa.088330 Cucumis sativus Cucsa.088330 N
mgf002286m Mimulus guttatus mgf002286m N
Aquca_023_00033 Aquilegia coerulea Aquca_023_00033 N
Carubv10001958m.g Capsella rubella Carubv10001958m.g N
Ciclev10002467m.g Citrus clementina Ciclev10002467m.g N
Ca_04306 Cicer arietinum Ca_04306 N
gene29104-v1.0-hybrid Fragaria vesca gene29104-v1.0-hybrid N
Gorai.005G074700 Gossypium raimondii Gorai.005G074700 N
Lus10009420.g Linum usitatissimum Lus10009420.g N
Lus10028701.g Linum usitatissimum Lus10028701.g N
MDP0000273602 Malus domestica MDP0000273602 N
orange1.1g028218m.g Citrus sinensis orange1.1g028218m.g N
SapurV1A.0179s0060 Salix purpurea SapurV1A.0179s0060 N
Thhalv10028979m.g Eutrema salsugineum Thhalv10028979m.g N
chr5.LjT08L18.190.nd Lotus japonicus chr5.LjT08L18.190.nd N
ORGLA03G0371400 Oryza glaberrima ORGLA03G0371400 N
GLYMA10G36001 Glycine max GLYMA10G36001 N
GLYMA20G31580 Glycine max GLYMA20G31580 N
MTR_1g096340 Medicago truncatula MTR_1g096340 N
OBART03G40280 Oryza barthii OBART03G40280 N
OGLUM03G40150 Oryza glumaepatula OGLUM03G40150 N
OLONG_012145 Oryza longistaminata OLONG_012145 N
ONIVA03G42160 Oryza nivara ONIVA03G42160 N
OPUNC03G37470 Oryza punctata OPUNC03G37470 N
OPUNC03G37490 Oryza punctata OPUNC03G37490 N
BGIOSGA009486 Oryza indica BGIOSGA009486 N
ORUFI03G42080 Oryza rufipogon ORUFI03G42080 N
OS03G0838900 Oryza sativa OS03G0838900 N
PGSC0003DMG400009226 Solanum tuberosum PGSC0003DMG400009226 N
POPTR_0013s11780 Populus trichocarpa POPTR_0013s11780 N
PRUPE_ppa026991mg Prunus persica PRUPE_ppa026991mg N
Solyc11g017430.1 Solanum lycopersicum Solyc11g017430.1 N
TCM_036345 Theobroma cacao TCM_036345 N
VIT_18s0072g01130 Vitis vinifera VIT_18s0072g01130 N