XP_002490850.1 (Pichia pastoris)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 XP_002490850.1 T392293_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GAL4
M01599_2.00 		Saccharomyces cerevisiae
NYCGGVN
NBCCGRN		 PBM
Zhu et al.(2009)
Gal4 		0.540 0.641
GAL4
M07559_2.00 		Saccharomyces cerevisiae
GGANVRCW
WGYBNTCC		 ChIP-exo
Rhee et al.(2011)
Gal4_1 		0.540 0.641
GAL4
M07560_2.00 		Saccharomyces cerevisiae
GGRAAARGGTC
GACCYTTTYCC		 ChIP-exo
Rhee et al.(2011)
Gal4_2 		0.540 0.641
GAL4
M07561_2.00 		Saccharomyces cerevisiae
AGAACAA
TTGTTCT		 ChIP-exo
Rhee et al.(2011)
Gal4_3 		0.540 0.641
GAL4
M08698_2.00 		Saccharomyces cerevisiae
CGGVSNNVTNYNSNCCG
CGGNSNRNABNNSBCCG		 Misc
DeBoer et al.(2011)
YPL248C_1510 		0.540 0.641
GAL4
M11487_2.00 		Saccharomyces cerevisiae
BYWCGGWSVAVWGHBVBCCGDDV
BHHCGGVBVDCWBTBSWCCGWRV		 Transfac
Matys et al.(2006)
F$GAL4_01 		0.540 0.641
GAL4
M11488_2.00 		Saccharomyces cerevisiae
HKYWCGGHVVRVWGHBNBCCGD
HCGGVNVDCWBYBBDCCGWRMD		 Transfac
Matys et al.(2006)
F$GAL4_C 		0.540 0.641
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002490850.1 Zinc cluster 42 80

Links

Other Zinc cluster family TFs
Other Pichia pastoris TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PAS_FragB_0075 Komagataella pastoris PAS_FragB_0075 I 0.683
CLUG_00203 Candida lusitaniae CLUG_00203 I 0.612
CLUG_00203 Clavispora lusitaniae CLUG_00203 I 0.612
GNLVRS01_PISO0F02711g Millerozyma farinosa GNLVRS01_PISO0F02711g I 0.612
GNLVRS01_PISO0J02671g Millerozyma farinosa GNLVRS01_PISO0J02671g I 0.612
DEHA2F03366g Debaryomyces hansenii DEHA2F03366g I 0.611
AWRI1499_3090 Brettanomyces bruxellensis AWRI1499_3090 I 0.607
CPAG_02485 Candida parapsilosis CPAG_02485 N 0.604
CORT_0C07270 Candida orthopsilosis CORT_0C07270 N 0.604
LELG_02329 Lodderomyces elongisporus LELG_02329 N 0.604
CANTEDRAFT_103981 Candida tenuis CANTEDRAFT_103981 I 0.598
G210_5810 Candida maltosa G210_5810 N 0.589
CaO19.12798 Candida albicans CaO19.12798 N 0.588
CaO19.5338 Candida albicans CaO19.5338 N 0.588
CD36_24740 Candida dubliniensis CD36_24740 N 0.588
JL09_g5364 Pichia kudriavzevii JL09_g5364 N 0.588
SAKL0A02860g Lachancea kluyveri SAKL0A02860g I 0.587
PGUG_04835 Candida guilliermondii PGUG_04835 I 0.586
PGUG_04835 Meyerozyma guilliermondii PGUG_04835 I 0.586
PICST_9952 Scheffersomyces stipitis PICST_9952 N 0.586
SPAPADRAFT_137810 Spathaspora passalidarum SPAPADRAFT_137810 N 0.586
gwh1.6.1.1306.1 Pichia stipitis gwh1.6.1.1306.1 N 0.586
ZBAI_04658 Zygosaccharomyces bailii ZBAI_04658 I 0.581
ZBAI_06699 Zygosaccharomyces bailii ZBAI_06699 I 0.581
CTRG_01928 Candida tropicalis CTRG_01928 N 0.573
KUCA_T00003059001 Kuraishia capsulata KUCA_T00003059001 N 0.573
DEHA2C11418g Debaryomyces hansenii DEHA2C11418g N 0.560
24374_YPL248C Saccharomyces bayanus 24374_YPL248C I 0.557
TBLA_0G01800 Tetrapisispora blattae TBLA_0G01800 I 0.556
TPHA_0H01980 Tetrapisispora phaffii TPHA_0H01980 I 0.556
GNLVRS01_PISO0E01698g Millerozyma farinosa GNLVRS01_PISO0E01698g N 0.552
GNLVRS01_PISO0I01526g Millerozyma farinosa GNLVRS01_PISO0I01526g N 0.552
CANTEDRAFT_110774 Candida tenuis CANTEDRAFT_110774 N 0.549
PICST_46395 Scheffersomyces stipitis PICST_46395 N 0.549
NCAS_0G01100 Naumovozyma castellii NCAS_0G01100 I 0.540
GAL4 Saccharomyces cerevisiae YPL248C D 0.540
Scas_Contig699.7 Saccharomyces castellii Scas_Contig699.7 I 0.540
21336_YPL248C Saccharomyces mikatae 21336_YPL248C I 0.540
21920_YPL248C Saccharomyces paradoxus 21920_YPL248C I 0.540